prot_H-elongata_contig4707.11806.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig4707.11806.1
Unique Nameprot_H-elongata_contig4707.11806.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length131
Homology
BLAST of mRNA_H-elongata_contig4707.11806.1 vs. uniprot
Match: A0A6H5JY05_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY05_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 5.430e-12
Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 0
Query:   70 VYTSKVDGQGWGVKAKSRLVARGFKQREGIYFCETFAPTVSSSCVRLLSAIACEYGLDL 128
            VY  K D  G  VKAK  LVA+GFKQ+ G+ + ETF+PT +++ +RLL A+AC+Y L+L
Sbjct:   61 VYNWKADETGKMVKAKPGLVAKGFKQKHGVDYLETFSPTANAASIRLLVALACKYNLEL 119          
BLAST of mRNA_H-elongata_contig4707.11806.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.740e-11
Identity = 33/79 (41.77%), Postives = 51/79 (64.56%), Query Frame = 0
Query:   55 GTLDIVHRLTPRCGR-----VYTSKVDGQGWGVKAKSRLVARGFKQREGIYFCETFAPTVSSSCVRLLSAIACEYGLDL 128
            GT  +  ++   C       V+  K D  G  VKAK+RLVA+GFKQ+ G+ + ETF+PT +++ +RL+ A+AC+Y L+L
Sbjct:  243 GTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLEL 321          
BLAST of mRNA_H-elongata_contig4707.11806.1 vs. uniprot
Match: A0A6H5JP36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP36_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.790e-11
Identity = 33/79 (41.77%), Postives = 51/79 (64.56%), Query Frame = 0
Query:   55 GTLDIVHRLTPRCGR-----VYTSKVDGQGWGVKAKSRLVARGFKQREGIYFCETFAPTVSSSCVRLLSAIACEYGLDL 128
            GT  +  ++   C       V+  K D  G  VKAK+RLVA+GFKQ+ G+ + ETF+PT +++ +RL+ A+AC+Y L+L
Sbjct:  176 GTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLEL 254          
BLAST of mRNA_H-elongata_contig4707.11806.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.800e-11
Identity = 33/79 (41.77%), Postives = 51/79 (64.56%), Query Frame = 0
Query:   55 GTLDIVHRLTPRCGR-----VYTSKVDGQGWGVKAKSRLVARGFKQREGIYFCETFAPTVSSSCVRLLSAIACEYGLDL 128
            GT  +  ++   C       V+  K D  G  VKAK+RLVA+GFKQ+ G+ + ETF+PT +++ +RL+ A+AC+Y L+L
Sbjct:  448 GTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLEL 526          
BLAST of mRNA_H-elongata_contig4707.11806.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.820e-11
Identity = 33/79 (41.77%), Postives = 51/79 (64.56%), Query Frame = 0
Query:   55 GTLDIVHRLTPRCGR-----VYTSKVDGQGWGVKAKSRLVARGFKQREGIYFCETFAPTVSSSCVRLLSAIACEYGLDL 128
            GT  +  ++   C       V+  K D  G  VKAK+RLVA+GFKQ+ G+ + ETF+PT +++ +RL+ A+AC+Y L+L
Sbjct:  512 GTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLEL 590          
BLAST of mRNA_H-elongata_contig4707.11806.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.820e-11
Identity = 33/79 (41.77%), Postives = 51/79 (64.56%), Query Frame = 0
Query:   55 GTLDIVHRLTPRCGR-----VYTSKVDGQGWGVKAKSRLVARGFKQREGIYFCETFAPTVSSSCVRLLSAIACEYGLDL 128
            GT  +  ++   C       V+  K D  G  VKAK+RLVA+GFKQ+ G+ + ETF+PT +++ +RL+ A+AC+Y L+L
Sbjct:  656 GTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLEL 734          
BLAST of mRNA_H-elongata_contig4707.11806.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.870e-11
Identity = 33/79 (41.77%), Postives = 51/79 (64.56%), Query Frame = 0
Query:   55 GTLDIVHRLTPRCGR-----VYTSKVDGQGWGVKAKSRLVARGFKQREGIYFCETFAPTVSSSCVRLLSAIACEYGLDL 128
            GT  +  ++   C       V+  K D  G  VKAK+RLVA+GFKQ+ G+ + ETF+PT +++ +RL+ A+AC+Y L+L
Sbjct:  862 GTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLEL 940          
BLAST of mRNA_H-elongata_contig4707.11806.1 vs. uniprot
Match: A0A6H5JKR2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKR2_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 3.360e-11
Identity = 31/59 (52.54%), Postives = 45/59 (76.27%), Query Frame = 0
Query:   70 VYTSKVDGQGWGVKAKSRLVARGFKQREGIYFCETFAPTVSSSCVRLLSAIACEYGLDL 128
            VY  + D  G  VKAK+RLVA+GFKQ+ G+ + ETF+PT +++ +RLL A+AC+Y L+L
Sbjct:  229 VYKWEADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLLVALACKYNLEL 287          
BLAST of mRNA_H-elongata_contig4707.11806.1 vs. uniprot
Match: A0A6H5KM90_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM90_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 3.520e-11
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 0
Query:   70 VYTSKVDGQGWGVKAKSRLVARGFKQREGIYFCETFAPTVSSSCVRLLSAIACEYGLDL 128
            VY+ K D  G+ V+AK+RLVARGF QREG+ F ETF+P  S + +RLL+AIAC    DL
Sbjct:  168 VYSRKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDL 226          
BLAST of mRNA_H-elongata_contig4707.11806.1 vs. uniprot
Match: A0A6H5JA99_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA99_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 5.180e-11
Identity = 39/108 (36.11%), Postives = 60/108 (55.56%), Query Frame = 0
Query:   21 EEADATILAAPSRRSGQRTEPSGGHAVDRSERPEGTLDIVHRLTPRCGRVYTSKVDGQGWGVKAKSRLVARGFKQREGIYFCETFAPTVSSSCVRLLSAIACEYGLDL 128
            ++ D+ +   P   +     P       + E  E  +D V     +   ++  KVD  G+  KAK+RLVARG  Q+E I F +++APTV+SS VR+L+A+ACE  L+L
Sbjct:  609 DDLDSAVREXPRCHAKDLRVPQTFKDAKQCEHSEQFMDAVKHNYIKSKLIFDWKVDAFGFPTKAKARLVARGDMQKECIDFGDSYAPTVTSSSVRMLAALACELDLEL 716          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4707.11806.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JY05_9PHAE5.430e-1252.54Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JV80_9PHAE2.740e-1141.77Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JP36_9PHAE2.790e-1141.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LDZ0_9PHAE2.800e-1141.77CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J594_9PHAE2.820e-1141.77Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KHE8_9PHAE2.820e-1141.77CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K622_9PHAE2.870e-1141.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKR2_9PHAE3.360e-1152.54Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KM90_9PHAE3.520e-1157.63Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JA99_9PHAE5.180e-1136.11Integrase catalytic domain-containing protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 70..125
e-value: 1.2E-11
score: 44.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4707contigH-elongata_contig4707:4921..5442 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4707.11806.1mRNA_H-elongata_contig4707.11806.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig4707 4684..6103 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig4707.11806.1 ID=prot_H-elongata_contig4707.11806.1|Name=mRNA_H-elongata_contig4707.11806.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp
MSASIVTIFDTLAEACFVSFEEADATILAAPSRRSGQRTEPSGGHAVDRS
ERPEGTLDIVHRLTPRCGRVYTSKVDGQGWGVKAKSRLVARGFKQREGIY
FCETFAPTVSSSCVRLLSAIACEYGLDLSF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2