prot_H-elongata_contig20564.5868.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig20564.5868.1
Unique Nameprot_H-elongata_contig20564.5868.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length51
Homology
BLAST of mRNA_H-elongata_contig20564.5868.1 vs. uniprot
Match: A0A6H5L471_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L471_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.560e-19
Identity = 40/49 (81.63%), Postives = 46/49 (93.88%), Query Frame = 0
Query:    3 PALSRKMVPKGEPLCCKRLSDVPLSQVAVVRAGVVTLCSEGLLKLWARP 51
            PALSR++ P+GEPLCCKRL+ VPLSQV VVRAGVVTLC++GLLKLWARP
Sbjct:  993 PALSRQLTPRGEPLCCKRLAQVPLSQVMVVRAGVVTLCADGLLKLWARP 1041          
BLAST of mRNA_H-elongata_contig20564.5868.1 vs. uniprot
Match: D7G1Z3_ECTSI (Catabolite repression protein creC n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Z3_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 1.560e-19
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 0
Query:    3 PALSRKMVPKGEPLCCKRLSDVPLSQVAVVRAGVVTLCSEGLLKLWARP 51
            PALSR+  P+GEPLCCKRL+ VPLSQV VVRAGVVTLC+EGLLKLWARP
Sbjct:  855 PALSRQSTPRGEPLCCKRLAQVPLSQVMVVRAGVVTLCAEGLLKLWARP 903          
BLAST of mRNA_H-elongata_contig20564.5868.1 vs. uniprot
Match: A0A836CCN0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCN0_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.360e-12
Identity = 30/49 (61.22%), Postives = 37/49 (75.51%), Query Frame = 0
Query:    3 PALSRKMVPKGEPLCCKRLSDVPLSQVAVVRAGVVTLCSEGLLKLWARP 51
            P L     P G PLCCK+L+ +PL+QVAV+R G+VTLC EGLLK+W RP
Sbjct:  793 PPLKITETPTGTPLCCKQLARLPLTQVAVLRCGIVTLCEEGLLKVWQRP 841          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20564.5868.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L471_9PHAE1.560e-1981.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1Z3_ECTSI1.560e-1983.67Catabolite repression protein creC n=1 Tax=Ectocar... [more]
A0A836CCN0_9STRA2.360e-1261.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20564contigH-elongata_contig20564:3237..3389 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20564.5868.1mRNA_H-elongata_contig20564.5868.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig20564 3237..3389 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig20564.5868.1 ID=prot_H-elongata_contig20564.5868.1|Name=mRNA_H-elongata_contig20564.5868.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
MLPALSRKMVPKGEPLCCKRLSDVPLSQVAVVRAGVVTLCSEGLLKLWAR
P
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