mRNA_H-elongata_contig20564.5868.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20564.5868.1
Unique NamemRNA_H-elongata_contig20564.5868.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20564.5868.1 vs. uniprot
Match: A0A6H5L471_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L471_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.560e-19
Identity = 40/49 (81.63%), Postives = 46/49 (93.88%), Query Frame = 1 
Query:    7 PALSRKMVPKGEPLCCKRLSDVPLSQVAVVRAGVVTLCSEGLLKLWARP 153
            PALSR++ P+GEPLCCKRL+ VPLSQV VVRAGVVTLC++GLLKLWARP
Sbjct:  993 PALSRQLTPRGEPLCCKRLAQVPLSQVMVVRAGVVTLCADGLLKLWARP 1041
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BLAST of mRNA_H-elongata_contig20564.5868.1 vs. uniprot
Match: D7G1Z3_ECTSI (Catabolite repression protein creC n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Z3_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 1.560e-19
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    7 PALSRKMVPKGEPLCCKRLSDVPLSQVAVVRAGVVTLCSEGLLKLWARP 153
            PALSR+  P+GEPLCCKRL+ VPLSQV VVRAGVVTLC+EGLLKLWARP
Sbjct:  855 PALSRQSTPRGEPLCCKRLAQVPLSQVMVVRAGVVTLCAEGLLKLWARP 903
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BLAST of mRNA_H-elongata_contig20564.5868.1 vs. uniprot
Match: A0A836CCN0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCN0_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.360e-12
Identity = 30/49 (61.22%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    7 PALSRKMVPKGEPLCCKRLSDVPLSQVAVVRAGVVTLCSEGLLKLWARP 153
            P L     P G PLCCK+L+ +PL+QVAV+R G+VTLC EGLLK+W RP
Sbjct:  793 PPLKITETPTGTPLCCKQLARLPLTQVAVLRCGIVTLCEEGLLKVWQRP 841
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20564.5868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L471_9PHAE1.560e-1981.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1Z3_ECTSI1.560e-1983.67Catabolite repression protein creC n=1 Tax=Ectocar... [more]
A0A836CCN0_9STRA2.360e-1261.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20564contigH-elongata_contig20564:3237..3389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue1.9e-16
Seed eggNOG ortholog2880.D7G1Z3
Preferred namecreC
KEGG koko:K03115
KEGG Pathwayko03008,ko04064,ko04137,ko04139,ko04310,ko04520,ko04712,ko05162,ko05168,ko05169,map03008,map04064,map04137,map04139,map04310,map04520,map04712,map05162,map05168,map05169
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006355,GO:0006464,GO:0006508,GO:0006807,GO:0007154,GO:0007584,GO:0008150,GO:0008152,GO:0009605,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0009991,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016579,GO:0019219,GO:0019222,GO:0019538,GO:0030428,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0032153,GO:0032991,GO:0036211,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045013,GO:0045892,GO:0045934,GO:0045990,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051286,GO:0051716,GO:0060255,GO:0061984,GO:0061985,GO:0065007,GO:0070646,GO:0070647,GO:0070887,GO:0071496,GO:0071704,GO:0080090,GO:1901564,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.carbon catabolite repression
EggNOG OGsCOG2319@1,KOG2394@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size153
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930151.6731014-CDS-H-elongata_contig20564:3236..33891622930151.6731014-CDS-H-elongata_contig20564:3236..3389Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20564 3237..3389 -
1691679300.8638003-CDS-H-elongata_contig20564:3236..33891691679300.8638003-CDS-H-elongata_contig20564:3236..3389Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20564 3237..3389 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20564.5868.1prot_H-elongata_contig20564.5868.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20564 3237..3389 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20564.5868.1

>prot_H-elongata_contig20564.5868.1 ID=prot_H-elongata_contig20564.5868.1|Name=mRNA_H-elongata_contig20564.5868.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
MLPALSRKMVPKGEPLCCKRLSDVPLSQVAVVRAGVVTLCSEGLLKLWAR
P
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mRNA from alignment at H-elongata_contig20564:3237..3389-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20564.5868.1 ID=mRNA_H-elongata_contig20564.5868.1|Name=mRNA_H-elongata_contig20564.5868.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=153bp|location=Sequence derived from alignment at H-elongata_contig20564:3237..3389- (Himanthalia elongata Himel1 dioecious)
ATGTTACCGGCGCTTTCCAGAAAGATGGTGCCGAAGGGGGAGCCCCTTTG
CTGCAAACGCCTGTCGGATGTGCCGTTGAGCCAGGTGGCAGTGGTGCGGG
CTGGGGTCGTAACGCTGTGCTCGGAGGGGCTGCTCAAGCTGTGGGCGCGG
CCA
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Coding sequence (CDS) from alignment at H-elongata_contig20564:3237..3389-

>mRNA_H-elongata_contig20564.5868.1 ID=mRNA_H-elongata_contig20564.5868.1|Name=mRNA_H-elongata_contig20564.5868.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig20564:3237..3389- (Himanthalia elongata Himel1 dioecious)
ATGTTACCGGCGCTTTCCAGAAAGATGGTGCCGAAGGGGGAGCCCCTTTG
CTGCAAACGCCTGTCGGATGTGCCGTTGAGCCAGGTGGCAGTGGTGCGGG
CTGGGGTCGTAACGCTGTGCTCGGAGGGGCTGCTCAAGCTGTGGGCGCGG
CCAATGTTACCGGCGCTTTCCAGAAAGATGGTGCCGAAGGGGGAGCCCCT
TTGCTGCAAACGCCTGTCGGATGTGCCGTTGAGCCAGGTGGCAGTGGTGC
GGGCTGGGGTCGTAACGCTGTGCTCGGAGGGGCTGCTCAAGCTGTGGGCG
CGGCCA
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