prot_H-elongata_contig205584.5864.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig205584.5864.1
Unique Nameprot_H-elongata_contig205584.5864.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length189
Homology
BLAST of mRNA_H-elongata_contig205584.5864.1 vs. uniprot
Match: A0A6H5J8N0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8N0_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 3.440e-66
Identity = 133/155 (85.81%), Postives = 139/155 (89.68%), Query Frame = 0
Query:    6 QGCGIVEYEDTRSANRAIRELNNTALGGRPIFVREDREQPSSRQGRXXXXXXXXXXXXXXXXXA-----NIAGRQLYVGNLSFETTWADLKDHFRTSGEVERADVMMDSSRRSKGWGTVRFRTPQEEAQTAIQELNGTELGSRQIEVREDNKVLG 155
            +GCGIVEYED R ANRAIRELNNTALGGRPIFVREDREQ + RQ  XXXXXXXXXXXXXXXXX      N+AGRQLYVGNLSFETTWADLKDHFRT+GEVERADVMMD SRRSKGWGTVRFRT QEEAQ+AIQELNGTELGSRQIEVRED+K  G
Sbjct:  215 KGCGIVEYEDIRGANRAIRELNNTALGGRPIFVREDREQQNPRQXXXXXXXXXXXXXXXXXXXXXXXXENLAGRQLYVGNLSFETTWADLKDHFRTAGEVERADVMMDGSRRSKGWGTVRFRT-QEEAQSAIQELNGTELGSRQIEVREDSKTGG 368          
BLAST of mRNA_H-elongata_contig205584.5864.1 vs. uniprot
Match: D8LGN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGN3_ECTSI)

HSP 1 Score: 218 bits (554), Expect = 6.500e-65
Identity = 133/154 (86.36%), Postives = 139/154 (90.26%), Query Frame = 0
Query:    6 QGCGIVEYEDTRSANRAIRELNNTALGGRPIFVREDREQPSSRQGRXXXXXXXXXXXXXXXXXA----NIAGRQLYVGNLSFETTWADLKDHFRTSGEVERADVMMDSSRRSKGWGTVRFRTPQEEAQTAIQELNGTELGSRQIEVREDNKVLG 155
            +GCGIVEYED R ANRAIRELNNTALGGRPIFVREDREQ + RQ  XXXXXXXXXXXXXXXXX     N+AGRQLYVGNLSFETTWADLKDHFRT+GEVERADVMMD SRRSKGWGTVRFRT QEEAQ+AIQELNGTELGSRQIEVRED+K  G
Sbjct:  354 KGCGIVEYEDIRGANRAIRELNNTALGGRPIFVREDREQQNPRQXXXXXXXXXXXXXXXXXXXXXXXENLAGRQLYVGNLSFETTWADLKDHFRTAGEVERADVMMDGSRRSKGWGTVRFRT-QEEAQSAIQELNGTELGSRQIEVREDSKTGG 506          
BLAST of mRNA_H-elongata_contig205584.5864.1 vs. uniprot
Match: I2CPF4_NANGC (Rnp domain-containing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPF4_NANGC)

HSP 1 Score: 135 bits (339), Expect = 1.190e-36
Identity = 81/152 (53.29%), Postives = 96/152 (63.16%), Query Frame = 0
Query:    6 QGCGIVEYEDTRSANRAIRELNNTALGGRPIFVREDREQPSSRQGRXXXXXXXXXXXXXXXXXA---NIAGRQLYVGNLSFETTWADLKDHFRTSGEVERADVMMDSSRRSKGWGTVRFRTPQEEAQTAIQELNGTELGSRQIEVREDNKVL 154
            +GCGIVEY++   A RAIRELNNT L GR IFVREDRE    + G                      + AGRQLYVGNL FE TW  LKDHF+   +V+RA+V  D+  RS+G+GTVRF T  E AQ A + LNGT L +R IEVREDN+VL
Sbjct:   46 KGCGIVEYDNPHGAMRAIRELNNTDLKGRLIFVREDRED--KKMGGPMGGGFQGGASMHRVGVGGPPSAAGRQLYVGNLDFEITWQGLKDHFK-GFDVQRAEVAYDAEGRSRGFGTVRFGTAAE-AQRAQEALNGTNLNNRTIEVREDNRVL 193          
BLAST of mRNA_H-elongata_contig205584.5864.1 vs. uniprot
Match: A0A7S2FQ91_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FQ91_9STRA)

HSP 1 Score: 130 bits (328), Expect = 3.150e-35
Identity = 74/150 (49.33%), Postives = 90/150 (60.00%), Query Frame = 0
Query:    6 QGCGIVEYEDTRSANRAIRELNNTALGGRPIFVREDREQPSSRQGRXXXXXXXXXXXXXXXXXANIAGRQLYVGNLSFETTWADLKDHFRTSG-EVERADVMMDSSRRSKGWGTVRFRTPQEEAQTAIQELNGTELGSRQIEVREDNKVL 154
            +GCGIVE+E    A +AI  L +T L GR I++REDRE       R                  ++AGRQLYVGNLSF+TTW DLKDHF      V+RA+V      RSKGWGT+R+ TP + A  AI+ LNGTEL  R IEVR DN+ L
Sbjct:   28 KGCGIVEFETAAEAQQAIDTLTDTDLNGRNIWIREDREDRGP--NRASAAAQVQGGGGAAVQVNHLAGRQLYVGNLSFDTTWQDLKDHFNIEDCPVQRAEVGQHPDGRSKGWGTIRYATP-DHANAAIENLNGTELDGRVIEVRLDNQAL 174          
BLAST of mRNA_H-elongata_contig205584.5864.1 vs. uniprot
Match: A0A6T7G480_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7G480_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.690e-33
Identity = 87/148 (58.78%), Postives = 105/148 (70.95%), Query Frame = 0
Query:    6 QGCGIVEYEDTRSANRAIRELNNTALGGRPIFVREDREQPSSRQG-RXXXXXXXXXXXXXXXXXANIAGRQLYVGNLSFETTWADLKDHFRTSGEVERADVMMDSSRRSKGWGTVRFRTPQEEAQTAIQELNGTELGSRQIEVREDNK 152
            +GCGIV+YE  + A RAIREL N+ L GR +FVREDRE  S   G   XXXXXXXXXXXXXX  +  +G QLYVGNLS++TTW DLKDHFR  GEVER++V        +G+GTVRF    E+A+ AI++LNG EL  R +EVR D K
Sbjct:   62 KGCGIVQYEQPQDAARAIRELQNSDLNGRSMFVREDREAGSGGGGGTSXXXXXXXXXXXXXXAGSGASGCQLYVGNLSYDTTWGDLKDHFRQIGEVERSEVA-----EKRGFGTVRF-FKAEDAEEAIEQLNGVELQGRNLEVRPDLK 203          
BLAST of mRNA_H-elongata_contig205584.5864.1 vs. uniprot
Match: B8CBN8_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBN8_THAPS)

HSP 1 Score: 126 bits (316), Expect = 3.080e-33
Identity = 70/150 (46.67%), Postives = 91/150 (60.67%), Query Frame = 0
Query:    6 QGCGIVEYEDTRSANRAIRELNNTALGGRPIFVREDREQPS---SRQGRXXXXXXXXXXXXXXXXXANIAGRQLYVGNLSFETTWADLKDHFRTSGEVERADVMMDSSRRSKGWGTVRFRTPQEEAQTAIQELNGTELGSRQIEVREDNK 152
            +GCGIVEY     A RA+ ELNN+ L GR IFVREDREQ +   +R G                      G QL+VGNLS+ET W +LKDHFR  GEV+RA+V   +  R +G+G VRF + ++ AQ AI++LNG +   R ++VR DNK
Sbjct:   40 KGCGIVEYSSPEEAARAVEELNNSELSGRQIFVREDREQTTGSNNRHGGGGFNNQRSHNTSYMQGSPAEEGCQLFVGNLSWETGWRELKDHFRQCGEVDRAEVAEGNDGRKRGFGLVRFHSAKD-AQAAIRKLNGVDFMGRPLDVRVDNK 188          
BLAST of mRNA_H-elongata_contig205584.5864.1 vs. uniprot
Match: A0A7S4IUY5_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IUY5_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.310e-32
Identity = 86/147 (58.50%), Postives = 103/147 (70.07%), Query Frame = 0
Query:    6 QGCGIVEYEDTRSANRAIRELNNTALGGRPIFVREDREQPSSRQGRXXXXXXXXXXXXXXXXXANIAGRQLYVGNLSFETTWADLKDHFRTSGEVERADVMMDSSRRSKGWGTVRFRTPQEEAQTAIQELNGTELGSRQIEVREDNK 152
            +GCGIV Y+  + A+RAIREL NT L GRPIFVREDREQ S     XXXXXXXXXXX         AG QL+VGNLS++T+W +LKDHFR  G+VERA+VM     +S+G+GTVRF   Q +A  AIQ LNG EL  R +EV+ D K
Sbjct:  374 KGCGIVRYQRPQEASRAIRELQNTMLTGRPIFVREDREQGSHHXXXXXXXXXXXXXXHSRVA----AGCQLWVGNLSWDTSWRELKDHFRQCGDVERAEVMEGPDGQSRGFGTVRFYR-QRDAANAIQRLNGVELQGRVLEVKIDGK 515          
BLAST of mRNA_H-elongata_contig205584.5864.1 vs. uniprot
Match: A0A7S1DBL6_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DBL6_CYCTE)

HSP 1 Score: 128 bits (322), Expect = 2.090e-32
Identity = 88/147 (59.86%), Postives = 109/147 (74.15%), Query Frame = 0
Query:    7 GCGIVEYEDTRSANRAIRELNNTALGGRPIFVREDREQPSSRQGRXXXXXXXXXXXXXXXXXANI-AGRQLYVGNLSFETTWADLKDHFRTSGEVERADVMMDSSRRSKGWGTVRFRTPQEEAQTAIQELNGTELGSRQIEVREDNK 152
            GCG+V Y++ + A+RAIREL N+ L GRP+++R+DR QP    GRXXXXXXXXXXXXXXXXX    +G QL+VGNLSF+T+W DLKDHFR  GEVE  +VM     R KG+GTVRF +  E A+ AI +LNG EL  R +EVR D+K
Sbjct:  216 GCGVVVYQNPKEASRAIRELQNSDLNGRPMYLRKDRVQPGG--GRXXXXXXXXXXXXXXXXXXXXXSGCQLFVGNLSFDTSWQDLKDHFRQCGEVEHVEVMETPEGRKKGFGTVRFGSAAE-AEAAISQLNGVELQGRTLEVRLDHK 359          
BLAST of mRNA_H-elongata_contig205584.5864.1 vs. uniprot
Match: A0A7S4IV24_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IV24_9STRA)

HSP 1 Score: 131 bits (330), Expect = 4.400e-32
Identity = 86/147 (58.50%), Postives = 103/147 (70.07%), Query Frame = 0
Query:    6 QGCGIVEYEDTRSANRAIRELNNTALGGRPIFVREDREQPSSRQGRXXXXXXXXXXXXXXXXXANIAGRQLYVGNLSFETTWADLKDHFRTSGEVERADVMMDSSRRSKGWGTVRFRTPQEEAQTAIQELNGTELGSRQIEVREDNK 152
            +GCGIV Y+  + A+RAIREL NT L GRPIFVREDREQ S     XXXXXXXXXXX         AG QL+VGNLS++T+W +LKDHFR  G+VERA+VM     +S+G+GTVRF   Q +A  AIQ LNG EL  R +EV+ D K
Sbjct:  646 KGCGIVRYQRPQEASRAIRELQNTMLTGRPIFVREDREQGSHHXXXXXXXXXXXXXXHSRVA----AGCQLWVGNLSWDTSWRELKDHFRQCGDVERAEVMEGPDGQSRGFGTVRFYR-QRDAANAIQRLNGVELQGRVLEVKIDGK 787          
BLAST of mRNA_H-elongata_contig205584.5864.1 vs. uniprot
Match: A0A7S2VF44_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VF44_9STRA)

HSP 1 Score: 122 bits (307), Expect = 9.080e-32
Identity = 83/160 (51.88%), Postives = 103/160 (64.38%), Query Frame = 0
Query:    1 AHSSRQGCGIVEYEDTRSANRAIRELNNTALGGRPIFVREDREQPSSRQGRXXXXXXXXXXXXXXXXXANIA--------GRQLYVGNLSFETTWADLKDHFRTSGEVERADVMMDSSRRSKGWGTVRFRTPQEEAQTAIQELNGTELGSRQIEVREDNK 152
            +H    GCG+V Y+  + A RAIREL N+ L GRP+F REDRE      G XXXXXXXXXXXX   XX            G QLY+GNL+FETTW +LKDHFR  G+V RA+V      +SKG+GT++F   +E+A  AI+ LNG+EL  R +EVR D K
Sbjct:   38 SHGESVGCGVVVYQRPQEAARAIRELQNSDLKGRPMFAREDREAGRGGPGXXXXXXXXXXXXXGRGXXXXXXXXXXXXXDGTQLYIGNLAFETTWKELKDHFRQCGDVRRAEVATGPGGQSKGFGTIQFFN-KEDADAAIESLNGSELQGRTLEVRADQK 196          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig205584.5864.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J8N0_9PHAE3.440e-6685.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGN3_ECTSI6.500e-6586.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
I2CPF4_NANGC1.190e-3653.29Rnp domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A7S2FQ91_9STRA3.150e-3549.33Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6T7G480_9STRA1.690e-3358.78Hypothetical protein n=1 Tax=Attheya septentrional... [more]
B8CBN8_THAPS3.080e-3346.67Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S4IUY5_9STRA1.310e-3258.50Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S1DBL6_CYCTE2.090e-3259.86Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S4IV24_9STRA4.400e-3258.50Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S2VF44_9STRA9.080e-3251.88Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 75..148
e-value: 8.8E-20
score: 81.7
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 76..145
e-value: 8.2E-19
score: 67.2
coord: 2..36
e-value: 2.1E-6
score: 27.4
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 74..152
score: 15.596
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 2..71
e-value: 1.0E-11
score: 47.1
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 72..153
e-value: 1.6E-24
score: 87.7
NoneNo IPR availablePANTHERPTHR23003RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEINcoord: 6..152
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 6..68
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 73..162

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig205584contigH-elongata_contig205584:75..989 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig205584.5864.1mRNA_H-elongata_contig205584.5864.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig205584 75..989 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig205584.5864.1 ID=prot_H-elongata_contig205584.5864.1|Name=mRNA_H-elongata_contig205584.5864.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=189bp
AHSSRQGCGIVEYEDTRSANRAIRELNNTALGGRPIFVREDREQPSSRQG
RRGGGGGGGHSNGGGGGGANIAGRQLYVGNLSFETTWADLKDHFRTSGEV
ERADVMMDSSRRSKGWGTVRFRTPQEEAQTAIQELNGTELGSRQIEVRED
NKVLGGGGGGANNSSSGGTSANTTAVVPPPSAAPISTT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf