mRNA_H-elongata_contig205584.5864.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig205584.5864.1 vs. uniprot
Match: A0A6H5J8N0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8N0_9PHAE) HSP 1 Score: 217 bits (553), Expect = 3.440e-66 Identity = 133/155 (85.81%), Postives = 139/155 (89.68%), Query Frame = 1
Query: 16 QGCGIVEYEDTRSANRAIRELNNTALGGRPIFVREDREQPSSRQGRXXXXXXXXXXXXXXXXXA-----NIAGRQLYVGNLSFETTWADLKDHFRTSGEVERADVMMDSSRRSKGWGTVRFRTPQEEAQTAIQELNGTELGSRQIEVREDNKVLG 465
+GCGIVEYED R ANRAIRELNNTALGGRPIFVREDREQ + RQ XXXXXXXXXXXXXXXXX N+AGRQLYVGNLSFETTWADLKDHFRT+GEVERADVMMD SRRSKGWGTVRFRT QEEAQ+AIQELNGTELGSRQIEVRED+K G
Sbjct: 215 KGCGIVEYEDIRGANRAIRELNNTALGGRPIFVREDREQQNPRQXXXXXXXXXXXXXXXXXXXXXXXXENLAGRQLYVGNLSFETTWADLKDHFRTAGEVERADVMMDGSRRSKGWGTVRFRT-QEEAQSAIQELNGTELGSRQIEVREDSKTGG 368
BLAST of mRNA_H-elongata_contig205584.5864.1 vs. uniprot
Match: D8LGN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGN3_ECTSI) HSP 1 Score: 218 bits (554), Expect = 6.500e-65 Identity = 133/154 (86.36%), Postives = 139/154 (90.26%), Query Frame = 1
Query: 16 QGCGIVEYEDTRSANRAIRELNNTALGGRPIFVREDREQPSSRQGRXXXXXXXXXXXXXXXXXA----NIAGRQLYVGNLSFETTWADLKDHFRTSGEVERADVMMDSSRRSKGWGTVRFRTPQEEAQTAIQELNGTELGSRQIEVREDNKVLG 465
+GCGIVEYED R ANRAIRELNNTALGGRPIFVREDREQ + RQ XXXXXXXXXXXXXXXXX N+AGRQLYVGNLSFETTWADLKDHFRT+GEVERADVMMD SRRSKGWGTVRFRT QEEAQ+AIQELNGTELGSRQIEVRED+K G
Sbjct: 354 KGCGIVEYEDIRGANRAIRELNNTALGGRPIFVREDREQQNPRQXXXXXXXXXXXXXXXXXXXXXXXENLAGRQLYVGNLSFETTWADLKDHFRTAGEVERADVMMDGSRRSKGWGTVRFRT-QEEAQSAIQELNGTELGSRQIEVREDSKTGG 506
BLAST of mRNA_H-elongata_contig205584.5864.1 vs. uniprot
Match: I2CPF4_NANGC (Rnp domain-containing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPF4_NANGC) HSP 1 Score: 135 bits (339), Expect = 1.190e-36 Identity = 81/152 (53.29%), Postives = 96/152 (63.16%), Query Frame = 1
Query: 16 QGCGIVEYEDTRSANRAIRELNNTALGGRPIFVREDREQPSSRQGRXXXXXXXXXXXXXXXXXA---NIAGRQLYVGNLSFETTWADLKDHFRTSGEVERADVMMDSSRRSKGWGTVRFRTPQEEAQTAIQELNGTELGSRQIEVREDNKVL 462
+GCGIVEY++ A RAIRELNNT L GR IFVREDRE + G + AGRQLYVGNL FE TW LKDHF+ +V+RA+V D+ RS+G+GTVRF T E AQ A + LNGT L +R IEVREDN+VL
Sbjct: 46 KGCGIVEYDNPHGAMRAIRELNNTDLKGRLIFVREDRED--KKMGGPMGGGFQGGASMHRVGVGGPPSAAGRQLYVGNLDFEITWQGLKDHFK-GFDVQRAEVAYDAEGRSRGFGTVRFGTAAE-AQRAQEALNGTNLNNRTIEVREDNRVL 193
BLAST of mRNA_H-elongata_contig205584.5864.1 vs. uniprot
Match: A0A7S2FQ91_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FQ91_9STRA) HSP 1 Score: 130 bits (328), Expect = 3.150e-35 Identity = 74/150 (49.33%), Postives = 90/150 (60.00%), Query Frame = 1
Query: 16 QGCGIVEYEDTRSANRAIRELNNTALGGRPIFVREDREQPSSRQGRXXXXXXXXXXXXXXXXXANIAGRQLYVGNLSFETTWADLKDHFRTSG-EVERADVMMDSSRRSKGWGTVRFRTPQEEAQTAIQELNGTELGSRQIEVREDNKVL 462
+GCGIVE+E A +AI L +T L GR I++REDRE R ++AGRQLYVGNLSF+TTW DLKDHF V+RA+V RSKGWGT+R+ TP + A AI+ LNGTEL R IEVR DN+ L
Sbjct: 28 KGCGIVEFETAAEAQQAIDTLTDTDLNGRNIWIREDREDRGP--NRASAAAQVQGGGGAAVQVNHLAGRQLYVGNLSFDTTWQDLKDHFNIEDCPVQRAEVGQHPDGRSKGWGTIRYATP-DHANAAIENLNGTELDGRVIEVRLDNQAL 174
BLAST of mRNA_H-elongata_contig205584.5864.1 vs. uniprot
Match: A0A6T7G480_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7G480_9STRA) HSP 1 Score: 127 bits (319), Expect = 1.690e-33 Identity = 87/148 (58.78%), Postives = 105/148 (70.95%), Query Frame = 1
Query: 16 QGCGIVEYEDTRSANRAIRELNNTALGGRPIFVREDREQPSSRQG-RXXXXXXXXXXXXXXXXXANIAGRQLYVGNLSFETTWADLKDHFRTSGEVERADVMMDSSRRSKGWGTVRFRTPQEEAQTAIQELNGTELGSRQIEVREDNK 456
+GCGIV+YE + A RAIREL N+ L GR +FVREDRE S G XXXXXXXXXXXXXX + +G QLYVGNLS++TTW DLKDHFR GEVER++V +G+GTVRF E+A+ AI++LNG EL R +EVR D K
Sbjct: 62 KGCGIVQYEQPQDAARAIRELQNSDLNGRSMFVREDREAGSGGGGGTSXXXXXXXXXXXXXXAGSGASGCQLYVGNLSYDTTWGDLKDHFRQIGEVERSEVA-----EKRGFGTVRF-FKAEDAEEAIEQLNGVELQGRNLEVRPDLK 203
BLAST of mRNA_H-elongata_contig205584.5864.1 vs. uniprot
Match: B8CBN8_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBN8_THAPS) HSP 1 Score: 126 bits (316), Expect = 3.080e-33 Identity = 70/150 (46.67%), Postives = 91/150 (60.67%), Query Frame = 1
Query: 16 QGCGIVEYEDTRSANRAIRELNNTALGGRPIFVREDREQPS---SRQGRXXXXXXXXXXXXXXXXXANIAGRQLYVGNLSFETTWADLKDHFRTSGEVERADVMMDSSRRSKGWGTVRFRTPQEEAQTAIQELNGTELGSRQIEVREDNK 456
+GCGIVEY A RA+ ELNN+ L GR IFVREDREQ + +R G G QL+VGNLS+ET W +LKDHFR GEV+RA+V + R +G+G VRF + ++ AQ AI++LNG + R ++VR DNK
Sbjct: 40 KGCGIVEYSSPEEAARAVEELNNSELSGRQIFVREDREQTTGSNNRHGGGGFNNQRSHNTSYMQGSPAEEGCQLFVGNLSWETGWRELKDHFRQCGEVDRAEVAEGNDGRKRGFGLVRFHSAKD-AQAAIRKLNGVDFMGRPLDVRVDNK 188
BLAST of mRNA_H-elongata_contig205584.5864.1 vs. uniprot
Match: A0A7S4IUY5_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IUY5_9STRA) HSP 1 Score: 131 bits (330), Expect = 1.310e-32 Identity = 86/147 (58.50%), Postives = 103/147 (70.07%), Query Frame = 1
Query: 16 QGCGIVEYEDTRSANRAIRELNNTALGGRPIFVREDREQPSSRQGRXXXXXXXXXXXXXXXXXANIAGRQLYVGNLSFETTWADLKDHFRTSGEVERADVMMDSSRRSKGWGTVRFRTPQEEAQTAIQELNGTELGSRQIEVREDNK 456
+GCGIV Y+ + A+RAIREL NT L GRPIFVREDREQ S XXXXXXXXXXX AG QL+VGNLS++T+W +LKDHFR G+VERA+VM +S+G+GTVRF Q +A AIQ LNG EL R +EV+ D K
Sbjct: 374 KGCGIVRYQRPQEASRAIRELQNTMLTGRPIFVREDREQGSHHXXXXXXXXXXXXXXHSRVA----AGCQLWVGNLSWDTSWRELKDHFRQCGDVERAEVMEGPDGQSRGFGTVRFYR-QRDAANAIQRLNGVELQGRVLEVKIDGK 515
BLAST of mRNA_H-elongata_contig205584.5864.1 vs. uniprot
Match: A0A7S1DBL6_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DBL6_CYCTE) HSP 1 Score: 128 bits (322), Expect = 2.090e-32 Identity = 88/147 (59.86%), Postives = 109/147 (74.15%), Query Frame = 1
Query: 19 GCGIVEYEDTRSANRAIRELNNTALGGRPIFVREDREQPSSRQGRXXXXXXXXXXXXXXXXXANI-AGRQLYVGNLSFETTWADLKDHFRTSGEVERADVMMDSSRRSKGWGTVRFRTPQEEAQTAIQELNGTELGSRQIEVREDNK 456
GCG+V Y++ + A+RAIREL N+ L GRP+++R+DR QP GRXXXXXXXXXXXXXXXXX +G QL+VGNLSF+T+W DLKDHFR GEVE +VM R KG+GTVRF + E A+ AI +LNG EL R +EVR D+K
Sbjct: 216 GCGVVVYQNPKEASRAIRELQNSDLNGRPMYLRKDRVQPGG--GRXXXXXXXXXXXXXXXXXXXXXSGCQLFVGNLSFDTSWQDLKDHFRQCGEVEHVEVMETPEGRKKGFGTVRFGSAAE-AEAAISQLNGVELQGRTLEVRLDHK 359
BLAST of mRNA_H-elongata_contig205584.5864.1 vs. uniprot
Match: A0A7S4IV24_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IV24_9STRA) HSP 1 Score: 131 bits (330), Expect = 4.400e-32 Identity = 86/147 (58.50%), Postives = 103/147 (70.07%), Query Frame = 1
Query: 16 QGCGIVEYEDTRSANRAIRELNNTALGGRPIFVREDREQPSSRQGRXXXXXXXXXXXXXXXXXANIAGRQLYVGNLSFETTWADLKDHFRTSGEVERADVMMDSSRRSKGWGTVRFRTPQEEAQTAIQELNGTELGSRQIEVREDNK 456
+GCGIV Y+ + A+RAIREL NT L GRPIFVREDREQ S XXXXXXXXXXX AG QL+VGNLS++T+W +LKDHFR G+VERA+VM +S+G+GTVRF Q +A AIQ LNG EL R +EV+ D K
Sbjct: 646 KGCGIVRYQRPQEASRAIRELQNTMLTGRPIFVREDREQGSHHXXXXXXXXXXXXXXHSRVA----AGCQLWVGNLSWDTSWRELKDHFRQCGDVERAEVMEGPDGQSRGFGTVRFYR-QRDAANAIQRLNGVELQGRVLEVKIDGK 787
BLAST of mRNA_H-elongata_contig205584.5864.1 vs. uniprot
Match: A0A7S2VF44_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VF44_9STRA) HSP 1 Score: 122 bits (307), Expect = 9.080e-32 Identity = 83/160 (51.88%), Postives = 103/160 (64.38%), Query Frame = 1
Query: 1 AHSSRQGCGIVEYEDTRSANRAIRELNNTALGGRPIFVREDREQPSSRQGRXXXXXXXXXXXXXXXXXANIA--------GRQLYVGNLSFETTWADLKDHFRTSGEVERADVMMDSSRRSKGWGTVRFRTPQEEAQTAIQELNGTELGSRQIEVREDNK 456
+H GCG+V Y+ + A RAIREL N+ L GRP+F REDRE G XXXXXXXXXXXX XX G QLY+GNL+FETTW +LKDHFR G+V RA+V +SKG+GT++F +E+A AI+ LNG+EL R +EVR D K
Sbjct: 38 SHGESVGCGVVVYQRPQEAARAIRELQNSDLKGRPMFAREDREAGRGGPGXXXXXXXXXXXXXGRGXXXXXXXXXXXXXDGTQLYIGNLAFETTWKELKDHFRQCGDVRRAEVATGPGGQSKGFGTIQFFN-KEDADAAIESLNGSELQGRTLEVRADQK 196 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig205584.5864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig205584.5864.1 >prot_H-elongata_contig205584.5864.1 ID=prot_H-elongata_contig205584.5864.1|Name=mRNA_H-elongata_contig205584.5864.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=189bp AHSSRQGCGIVEYEDTRSANRAIRELNNTALGGRPIFVREDREQPSSRQGback to top mRNA from alignment at H-elongata_contig205584:75..989- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig205584.5864.1 ID=mRNA_H-elongata_contig205584.5864.1|Name=mRNA_H-elongata_contig205584.5864.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=915bp|location=Sequence derived from alignment at H-elongata_contig205584:75..989- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig205584:75..989- >mRNA_H-elongata_contig205584.5864.1 ID=mRNA_H-elongata_contig205584.5864.1|Name=mRNA_H-elongata_contig205584.5864.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1134bp|location=Sequence derived from alignment at H-elongata_contig205584:75..989- (Himanthalia elongata Himel1 dioecious)back to top |