prot_H-elongata_contig20169.5695.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig20169.5695.1
Unique Nameprot_H-elongata_contig20169.5695.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length261
Homology
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BLAST of mRNA_H-elongata_contig20169.5695.1 vs. uniprot
Match: A0A7S2AYU7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AYU7_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.350e-18
Identity = 54/174 (31.03%), Postives = 90/174 (51.72%), Query Frame = 0 
Query:   79 PPAEILLLGMDVMMWECRKRHWGQVRGPPPIVRVHGYGIKEEKLELQPEFDRKLARCIEMAGRTGEMNFMMEGLTYFPMGIFQEKVGRKLKSLRLDSNDFSSGTGVVFRHTWEDLDNITHSVSLRNLRILSLKSCKLRRLSDGVGELACLKELYLESNRIFQLPEMLTRLHMLE 252
            PP E++  GMD + W  R+++   V GP P++  H YGI +EK++L+PEF+ ++ + ++ A  T E+    +GL   P  I +     +L+ L+L +N  +S     F  T            L++L++L LK+C+++ L + +G L  LK L LE            RL  LE
Sbjct:    9 PPYELINEGMDQLQWALRRKYLEAVHGPSPVMNAHFYGIADEKIDLEPEFNDRIQQAVDKAAMTNELVLQQQGLFELPPAINELT---ELEILKLSANHLNSAP-PHFEET------------LQSLQVLWLKNCEVQELDNSIGVLHHLKHLDLEDXXXXXXXXXFVRLRKLE 166
[Close]
BLAST of mRNA_H-elongata_contig20169.5695.1 vs. uniprot
Match: D8LE74_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE74_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.870e-13
Identity = 78/251 (31.08%), Postives = 91/251 (36.25%), Query Frame = 0 
Query:    1 RLDVNCLTDLPRSIVQLERLDELCLTSNFFASFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADPPAEILLLGMDVMMWECRKRHWGQVRGPPPIVRVHGYGIKEEKLELQPEFDRKLARCIEMAGRTGEMNFMMEGLTYFPMGIFQEKVGRKLKSLRLDSNDFSSGTGVVFRHTWEDLDNITHSVSLRNLRILSLKSCKLRRLSDGVGELACLKELYLESNRIFQLPEMLTRLHML 251
            RLDVNCLT+LP S+VQL+RL+ELCLTSNFFA+F                                                                                            P+F  K+A                 GL    +G        +LK L      +S G     +         T  VSL NL +LSLKSCKLRRL D V EL CLKELYLE+N I  LPE  TRL ML
Sbjct:  455 RLDVNCLTELPSSMVQLDRLEELCLTSNFFATF--------------------------------------------------------------------------------------------PDFAMKMA-----------------GLKKLLLG------NNQLKKL-----PYSVGFLTSLK---------TLQVSLCNLTVLSLKSCKLRRLDDDVAELRCLKELYLETNLILNLPETFTRLRML 576
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20169.5695.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S2AYU7_9STRA1.350e-1831.03Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
D8LE74_ECTSI1.870e-1331.08Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 63..86
e-value: 25.0
score: 10.0
coord: 202..223
e-value: 36.0
score: 8.7
coord: 40..61
e-value: 66.0
score: 6.5
coord: 225..248
e-value: 4.2
score: 16.3
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..85
e-value: 2.9E-17
score: 64.5
coord: 128..255
e-value: 9.7E-12
score: 46.4
IPR013101Leucine-rich repeat 2PFAMPF07723LRR_2coord: 167..183
e-value: 0.89
score: 10.3
NoneNo IPR availablePANTHERPTHR16083LEUCINE RICH REPEAT CONTAINING PROTEINcoord: 3..141
NoneNo IPR availablePANTHERPTHR16083:SF20LEUCINE-RICH REPEAT-CONTAINING PROTEIN 40coord: 3..141
NoneNo IPR availablePANTHERPTHR16083LEUCINE RICH REPEAT CONTAINING PROTEINcoord: 201..253
NoneNo IPR availablePANTHERPTHR16083:SF20LEUCINE-RICH REPEAT-CONTAINING PROTEIN 40coord: 201..253
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 2..251

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20169contigH-elongata_contig20169:681..5273 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20169.5695.1mRNA_H-elongata_contig20169.5695.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig20169 681..5273 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig20169.5695.1 ID=prot_H-elongata_contig20169.5695.1|Name=mRNA_H-elongata_contig20169.5695.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=261bp
RLDVNCLTDLPRSIVQLERLDELCLTSNFFASFPEFVMRITSLKKLLLGN
NQLKKLPYSIGFLSSLETLQLYNNPLADPPAEILLLGMDVMMWECRKRHW
GQVRGPPPIVRVHGYGIKEEKLELQPEFDRKLARCIEMAGRTGEMNFMME
GLTYFPMGIFQEKVGRKLKSLRLDSNDFSSGTGVVFRHTWEDLDNITHSV
SLRNLRILSLKSCKLRRLSDGVGELACLKELYLESNRIFQLPEMLTRLHM
LEVWTKYRIT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675LRR_dom_sf
IPR013101Leu-rich_rpt_2