mRNA_H-elongata_contig20169.5695.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20169.5695.1
Unique NamemRNA_H-elongata_contig20169.5695.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20169.5695.1 vs. uniprot
Match: A0A7S2AYU7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AYU7_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.350e-18
Identity = 54/174 (31.03%), Postives = 90/174 (51.72%), Query Frame = 1 
Query:  235 PPAEILLLGMDVMMWECRKRHWGQVRGPPPIVRVHGYGIKEEKLELQPEFDRKLARCIEMAGRTGEMNFMMEGLTYFPMGIFQEKVGRKLKSLRLDSNDFSSGTGVVFRHTWEDLDNITHSVSLRNLRILSLKSCKLRRLSDGVGELACLKELYLESNRIFQLPEMLTRLHMLE 756
            PP E++  GMD + W  R+++   V GP P++  H YGI +EK++L+PEF+ ++ + ++ A  T E+    +GL   P  I +     +L+ L+L +N  +S     F  T            L++L++L LK+C+++ L + +G L  LK L LE            RL  LE
Sbjct:    9 PPYELINEGMDQLQWALRRKYLEAVHGPSPVMNAHFYGIADEKIDLEPEFNDRIQQAVDKAAMTNELVLQQQGLFELPPAINELT---ELEILKLSANHLNSAP-PHFEET------------LQSLQVLWLKNCEVQELDNSIGVLHHLKHLDLEDXXXXXXXXXFVRLRKLE 166
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BLAST of mRNA_H-elongata_contig20169.5695.1 vs. uniprot
Match: D8LE74_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE74_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.870e-13
Identity = 78/251 (31.08%), Postives = 91/251 (36.25%), Query Frame = 1 
Query:    1 RLDVNCLTDLPRSIVQLERLDELCLTSNFFASFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADPPAEILLLGMDVMMWECRKRHWGQVRGPPPIVRVHGYGIKEEKLELQPEFDRKLARCIEMAGRTGEMNFMMEGLTYFPMGIFQEKVGRKLKSLRLDSNDFSSGTGVVFRHTWEDLDNITHSVSLRNLRILSLKSCKLRRLSDGVGELACLKELYLESNRIFQLPEMLTRLHML 753
            RLDVNCLT+LP S+VQL+RL+ELCLTSNFFA+F                                                                                            P+F  K+A                 GL    +G        +LK L      +S G     +         T  VSL NL +LSLKSCKLRRL D V EL CLKELYLE+N I  LPE  TRL ML
Sbjct:  455 RLDVNCLTELPSSMVQLDRLEELCLTSNFFATF--------------------------------------------------------------------------------------------PDFAMKMA-----------------GLKKLLLG------NNQLKKL-----PYSVGFLTSLK---------TLQVSLCNLTVLSLKSCKLRRLDDDVAELRCLKELYLETNLILNLPETFTRLRML 576
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20169.5695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S2AYU7_9STRA1.350e-1831.03Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
D8LE74_ECTSI1.870e-1331.08Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20169contigH-elongata_contig20169:681..5273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.0
Seed ortholog evalue3.8e-12
Seed eggNOG ortholog2880.D8LE74
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size783
Cds size783
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20169.5695.1prot_H-elongata_contig20169.5695.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20169 681..5273 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930134.6885252-CDS-H-elongata_contig20169:680..8661622930134.6885252-CDS-H-elongata_contig20169:680..866Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20169 681..866 -
1691679294.1162205-CDS-H-elongata_contig20169:680..8661691679294.1162205-CDS-H-elongata_contig20169:680..866Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20169 681..866 -
1622930134.7074518-CDS-H-elongata_contig20169:1221..13291622930134.7074518-CDS-H-elongata_contig20169:1221..1329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20169 1222..1329 -
1691679294.1285517-CDS-H-elongata_contig20169:1221..13291691679294.1285517-CDS-H-elongata_contig20169:1221..1329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20169 1222..1329 -
1622930134.7229059-CDS-H-elongata_contig20169:1573..17081622930134.7229059-CDS-H-elongata_contig20169:1573..1708Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20169 1574..1708 -
1691679294.1361668-CDS-H-elongata_contig20169:1573..17081691679294.1361668-CDS-H-elongata_contig20169:1573..1708Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20169 1574..1708 -
1622930134.7377076-CDS-H-elongata_contig20169:1984..21281622930134.7377076-CDS-H-elongata_contig20169:1984..2128Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20169 1985..2128 -
1691679294.1446478-CDS-H-elongata_contig20169:1984..21281691679294.1446478-CDS-H-elongata_contig20169:1984..2128Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20169 1985..2128 -
1622930134.7521417-CDS-H-elongata_contig20169:4116..41911622930134.7521417-CDS-H-elongata_contig20169:4116..4191Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20169 4117..4191 -
1691679294.158009-CDS-H-elongata_contig20169:4116..41911691679294.158009-CDS-H-elongata_contig20169:4116..4191Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20169 4117..4191 -
1622930134.765868-CDS-H-elongata_contig20169:5138..52731622930134.765868-CDS-H-elongata_contig20169:5138..5273Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20169 5139..5273 -
1691679294.1730096-CDS-H-elongata_contig20169:5138..52731691679294.1730096-CDS-H-elongata_contig20169:5138..5273Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20169 5139..5273 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20169.5695.1

>prot_H-elongata_contig20169.5695.1 ID=prot_H-elongata_contig20169.5695.1|Name=mRNA_H-elongata_contig20169.5695.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=261bp
RLDVNCLTDLPRSIVQLERLDELCLTSNFFASFPEFVMRITSLKKLLLGN
NQLKKLPYSIGFLSSLETLQLYNNPLADPPAEILLLGMDVMMWECRKRHW
GQVRGPPPIVRVHGYGIKEEKLELQPEFDRKLARCIEMAGRTGEMNFMME
GLTYFPMGIFQEKVGRKLKSLRLDSNDFSSGTGVVFRHTWEDLDNITHSV
SLRNLRILSLKSCKLRRLSDGVGELACLKELYLESNRIFQLPEMLTRLHM
LEVWTKYRIT*
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mRNA from alignment at H-elongata_contig20169:681..5273-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20169.5695.1 ID=mRNA_H-elongata_contig20169.5695.1|Name=mRNA_H-elongata_contig20169.5695.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4593bp|location=Sequence derived from alignment at H-elongata_contig20169:681..5273- (Himanthalia elongata Himel1 dioecious)
AGGTTAGACGTAAACTGTTTGACTGATCTTCCTCGATCGATCGTGCAGCT
GGAGAGACTGGACGAACTGTGTTTGACCAGCAACTTTTTTGCCAGCTTTC
CGGAATTTGTGATGAGGATAACAAGTCTCAAGAAGGTACGGGAGGATGTT
ACGCAGAGCTGCGCGACGCCGTACAGGGCTGGCCACGCTTGCGTCCGGCA
CCCCACCTATGGGGTTATTGATTTACCATCGTGTAATGCCGTCCTCCGGA
ACAGCCAAACGGCAAGGGCTCGTGCCGTTAACCCCCCCCCCCAACCTCCC
CCAACTCCAATCTCCGCCCGGACGAGTATAGGCGGAGCCTCGACGCCTTT
TGATCGTTTATTTGGAAGTACTGTACGAAGTCTCTTTCTCTCGTCGGAGT
GTTTATTGTTCGTTCGTTGGTTGTTTGAATTTGCTTCTCCTTCCCCGCTC
TCGTGTTGTTTATTTCTCACTGCCTCTAGCTAGTGCCCTTTCCACCATTT
TTTTGAAAACGATAACCAATATACCGGTATATATATATACATATGTACGT
GCACACTTAAGTATATATTTACTGTCGTTATATTGAAATAGATAAGAAAG
TCAAGATGAAAATAAGGATGAAAAAAGGCGGTCGATCGAGTGGACGACAA
CGAGGCAAAACACACCAAAGCCCGTAGACATGCGACGCAGCGACGGCGGT
TGCCACTAAGCGCTCAGACCCTTTCCGCCACCCTCCCCCGAACATTTCCC
AACGACGTTCATCCATTCTTTGAAACCTGGGCTCTAAACATTTTCCGAGG
ACATTCATCGCATGATGAGATCGGCAGCCGCGCTGAGCCGAAATACGGAT
AACATTGCCGCCGGTCGGTATCGGTACCCTGCTGTCTGGTAGCGACGTGC
TGAAAGCATAGCTAAGTTATCGTGGCGGGAGTGTTTATTACACAAACCTT
CAACAATGTATTATTGTTATAATAATAATAGCGGTCGACGGTTTTTTTTG
CGGCGTCGAGATGTCGCCAAAATACTGCATGCAGCATGTCGGTTACGCAC
GGCCATCGGTGGTCCTCGTTATTTTCGAACAGTTGCTGCTTGGGAATAAT
CAGCTCAAGAAGCTCCCCTACAGCATTGGTTTTCTGTCAAGCCTCGAAAC
GCTTCAGGTAGGCACGAAATACGGTATGCCCCTACTATAGAGAAGTCTCA
AGCAATGGCAGTTGTATCGAATAAATAATACAACATGTGTAATTTTTTGA
AGTGTTGCTCTTTCCAAGAATTGAACCCCACGAGGCACGTTGTTTGTTGT
GTATTGCGGTGCCCCCCATACTTGTAGCGCCATCCCCTTATCGTGAATAT
TGAGGTGGTCTTCCCCTCTTGCGGCATCCCCTCTCCACATAACATCTCCT
ACCCATTATGTCACATCATGTCACCTTAGCGCTGCTTCGACTCCCCGCCA
TCAATATCTGACATTTCCTTTACTTACGTGGTTTTTCACATTTATTAAAA
AATATTGAACCCTTTAAAATACTTCACATTTATGAACGAATCTGGAAAAA
AGTTAACATAAAAAAGTGAAAATGTCGTTTTAAATTTTTAGACCCAAACT
TTAACTATTCTGTATGCATGTATATATCAATTTTCAATTTTCACGTTTGT
TTTCCGCTTGTTAAAACCAAAAACGTGGTTTAAAATATTTTCCACACCTT
CCCATATCTTCGACGTTTTTTTGAACATTTTCCGTATTTGAATACTACAT
AGTCTCAGAGTTTAATTGTTTTTTTTAATGTTTTGCGTTCATTGATTTAA
AGTAGCTCTATGAATATTAATTGAATCTTGCTCTATTATATACGTAGTAC
TTCGTAAATACATTCATACTCAAGTTCATAAAATTATTTTTTATATATTT
TGTTTGAAAGTTTTATTTTTATTGAATTATAAGCTGATGTCAAAATCCAG
CCCGTGGTCACAAGGTAGAAAAAACACCACCCGGAAGGAGAAAAACCTTC
AACGTACTCTCCGATACAAAAAAAGAAAACGCATTGGAAACTACTGATTT
CGAAGAATAAACACGGTAAATGCGCCATATTCCTTGGTTGCTGCTCTTCA
CAACAGGAGTCAGAGAGGATGCACCCCCTCCCAGAGTTTCGATCATACAA
ACCTACGGATGGAGTAAAAAGTAAAACACGGATAATTTATATTCGTTCCC
TTTCGTTCTCTCCCCGTTATATCATGCCTCAAGATTTTGTTTGCTTCTTT
TTCCAAAACATATTTTCCTCGATGTATTTTACAAGAGCTAAGTGGGGACG
CATTGTGTAGTGTTGGGCGCGGATGTCCCAGCGTTGGGAGGAAACACTGT
GGCATGGAAATATCGTACAAACGAAGGGCGTGCCGTAGCAGCGAGGCCTC
GGAAAGATCAAGGGTTTAAGTTCATAGCGGTGTAAGACTATATCACATAT
GCCCACTCTCTCAATAGTGGGTGTGGGAAAAGAGAGGCGCATAATAATTG
GTCCATGGGGTTACCTGAATAGACTACACCCGTTACTCAAGCTACCTTGA
AGACTGCTGGCTCAGCGCCGGAGGACTCTCGGTGGTAAACCCCATCGGTA
CGCAATTGTGTGACCTGATAAAATCGGAATTGGCCCGATGGCGTTTGACG
GTAGAGATGGACGCCGTCGCCGCGGAAACCGAGAGGATCAAGAGGATCGC
GGGAGTACGCACCAGATTCAGCCTAGGTTGAGCATATGAGCACGTTGACG
CTGGACGGGACTGCTGAACCCGTCTCGCGAGACCAAATCATCAGACACGA
ACGGGGACAGGGAAAACTCACTTTCCCTATTCAGCTGGCCACAAGCAGGA
GGCAATCAAATCCAGTTGGTCCTTACTCTGCTATATGTGAAGAACACACA
CATCCCGTTACCCCCACGCTGCGTATTGTAATATATCCCCTTCACCCTGT
GGCGTAACCCCTCCACCTTGCGGCGTATCCGCTTAATCCTGTGGTGAACC
CCCGAGACGAGGGGGGCGTCATAATGTAAAGTACCCACTGCACAAACCTT
TCGCTTCCTATAACGCTACTATATACAGTATATATACATCGCATATAACC
CACGTGAGGATAATGCCCCTCCCTGACCCACTTGCCGGCCGACAGCTGTA
CAACAACCCTCTTGCAGATCCTCCAGCCGAGATTTTGTTGCTGGGCATGG
ATGTCATGATGTGGGAATGCCGCAAGAGGCACTGGGGACAAGTTAGAGGT
CCACCGCCAATTGTTAGAGTTCATGGCTACGGGATCAAGGTGGGTTGGGA
CGGCTGGGCGGGAGGCATGAACACGAGGTAGGCTATATCTATATATATAA
CAATTGAATACTTAGGACGCCTGATCGATGATTAGGCGGTTTGCTATTTT
CATCGTTGGATTAATATGCCATGATGTTTTAACGAAAGAGAACGATGGCC
AGTCAGGGCAAGGATCTCAGCCGAAAGCCGTCATGTTGTTCGGTTGGAAA
TGAGGCAGGGTCATGCAAGTCTTTGACCAGCGACCCTGAGAAAACCGTTA
AATCATATATCGCAGGAGGAGAAGCTTGAGCTTCAGCCTGAGTTTGACCG
CAAACTAGCCAGATGCATCGAAATGGCTGGTAGAACTGGAGAGATGAACT
TCATGATGGAGGGACTCACATATTTCCCAATGGGCATATTCCAAGAGAAG
GTAATATATAGGAAGGAACGTGTCATACGCCAAAAAGTTTACCCATCTTC
CCAAACGCGCACGTAAACTGGAAACCTTATATTATGCGACATGCCATATC
TCCATGCATTGTCCGTCACATGGTTCTCATCATAAGTCACACAGAGTCGT
TTCTTTTTTGCATTGTTTTTCAAAATCTGGTGTTATGCACGTTTGGCCTG
AACCAACCCTCGATCCCCTTCTGTTATTGCGGCGCATGCGCAAGGTCGGT
AGGAAGCTAAAGAGCTTACGTCTGGACAGCAACGACTTCAGCAGTGGCAC
TGGCGTTGTCTTTCGTCACACGTGGGAAGACTTGGACAATATTACGCATT
CGGTAAGGGGGTGAACCCCTTTTCTATCTGATACTCTTGATCAATCACTC
ACCATCCCGTTGTTCGATCTGATAACTTTAGAGGAAGGACAGGACGGGTT
ACGGAGCCACATGCGAGCGTCAAAATTGATCTCGCGATGGTTCATTCAGT
GCAACCGCACATATTTCGCTTTGCACTAGGACGGTGGGTGTACCCCTAAT
GGAATCAAAACCTTGCATGGCCATTCCGTGCCAACGTCGACGCTCGGATC
CACACTACCGTACAATGACCCCCTCAAGATGATGCGGAAGCTCCGCCCCA
ACTCATTTAGCAAATCTGCAGTACACGATGTGTGAATATTTTGACTTTAT
TATATAGGTATCACTCCGCAACCTTCGGATCCTTTCTCTGAAGAGCTGCA
AGTTACGGCGGCTGAGCGATGGCGTTGGAGAGCTAGCGTGTTTGAAGGAA
CTTTATCTGGAGAGTAACCGAATATTTCAGCTTCCTGAGATGTTAACAAG
ACTCCATATGCTGGAGGTATGGACTAAGTATCGTATCACATGA
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Coding sequence (CDS) from alignment at H-elongata_contig20169:681..5273-

>mRNA_H-elongata_contig20169.5695.1 ID=mRNA_H-elongata_contig20169.5695.1|Name=mRNA_H-elongata_contig20169.5695.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1566bp|location=Sequence derived from alignment at H-elongata_contig20169:681..5273- (Himanthalia elongata Himel1 dioecious)
AGGTTAGACGTAAACTGTTTGACTGATCTTCCTCGATCGATCGTGCAGCT
GGAGAGACTGGACGAACTGTGTTTGACCAGCAACTTTTTTGCCAGCTTTC
CGGAATTTGTGATGAGGATAACAAGTCTCAAGAAGAGGTTAGACGTAAAC
TGTTTGACTGATCTTCCTCGATCGATCGTGCAGCTGGAGAGACTGGACGA
ACTGTGTTTGACCAGCAACTTTTTTGCCAGCTTTCCGGAATTTGTGATGA
GGATAACAAGTCTCAAGAAGTTGCTGCTTGGGAATAATCAGCTCAAGAAG
CTCCCCTACAGCATTGGTTTTCTGTCAAGCCTCGAAACGCTTCAGTTGCT
GCTTGGGAATAATCAGCTCAAGAAGCTCCCCTACAGCATTGGTTTTCTGT
CAAGCCTCGAAACGCTTCAGCTGTACAACAACCCTCTTGCAGATCCTCCA
GCCGAGATTTTGTTGCTGGGCATGGATGTCATGATGTGGGAATGCCGCAA
GAGGCACTGGGGACAAGTTAGAGGTCCACCGCCAATTGTTAGAGTTCATG
GCTACGGGATCAAGCTGTACAACAACCCTCTTGCAGATCCTCCAGCCGAG
ATTTTGTTGCTGGGCATGGATGTCATGATGTGGGAATGCCGCAAGAGGCA
CTGGGGACAAGTTAGAGGTCCACCGCCAATTGTTAGAGTTCATGGCTACG
GGATCAAGGAGGAGAAGCTTGAGCTTCAGCCTGAGTTTGACCGCAAACTA
GCCAGATGCATCGAAATGGCTGGTAGAACTGGAGAGATGAACTTCATGAT
GGAGGGACTCACATATTTCCCAATGGGCATATTCCAAGAGAAGGAGGAGA
AGCTTGAGCTTCAGCCTGAGTTTGACCGCAAACTAGCCAGATGCATCGAA
ATGGCTGGTAGAACTGGAGAGATGAACTTCATGATGGAGGGACTCACATA
TTTCCCAATGGGCATATTCCAAGAGAAGGTCGGTAGGAAGCTAAAGAGCT
TACGTCTGGACAGCAACGACTTCAGCAGTGGCACTGGCGTTGTCTTTCGT
CACACGTGGGAAGACTTGGACAATATTACGCATTCGGTCGGTAGGAAGCT
AAAGAGCTTACGTCTGGACAGCAACGACTTCAGCAGTGGCACTGGCGTTG
TCTTTCGTCACACGTGGGAAGACTTGGACAATATTACGCATTCGGTATCA
CTCCGCAACCTTCGGATCCTTTCTCTGAAGAGCTGCAAGTTACGGCGGCT
GAGCGATGGCGTTGGAGAGCTAGCGTGTTTGAAGGAACTTTATCTGGAGA
GTAACCGAATATTTCAGCTTCCTGAGATGTTAACAAGACTCCATATGCTG
GAGGTATGGACTAAGTATCGTATCACATGAGTATCACTCCGCAACCTTCG
GATCCTTTCTCTGAAGAGCTGCAAGTTACGGCGGCTGAGCGATGGCGTTG
GAGAGCTAGCGTGTTTGAAGGAACTTTATCTGGAGAGTAACCGAATATTT
CAGCTTCCTGAGATGTTAACAAGACTCCATATGCTGGAGGTATGGACTAA
GTATCGTATCACATGA
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