prot_H-elongata_contig20168.5693.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig20168.5693.1
Unique Nameprot_H-elongata_contig20168.5693.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length63
Homology
BLAST of mRNA_H-elongata_contig20168.5693.1 vs. uniprot
Match: D8LRU5_ECTSI (Novel Sm-like protein with long N-and C-terminal domains n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRU5_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 7.320e-12
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 0
Query:    5 VRSYGTESRVQGHMIPPSDETFEFVCFRGQDIKDLHVHD 43
            VRS+GTE RV+GH+IPPS    +FVCFRGQDI DLHVHD
Sbjct:   44 VRSFGTEGRVEGHVIPPSQVLHDFVCFRGQDIMDLHVHD 82          
BLAST of mRNA_H-elongata_contig20168.5693.1 vs. uniprot
Match: A0A836C876_9STRA (Scd6-like Sm domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C876_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 3.390e-9
Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 0
Query:    5 VRSYGTESRVQGHMIPPSDETFEFVCFRGQDIKDLHVHD 43
            V+S+GTE+RV+G  +P SDE F  + FRGQDIKDLHVHD
Sbjct:   40 VKSWGTENRVEGPQVPASDEIFGCIVFRGQDIKDLHVHD 78          
BLAST of mRNA_H-elongata_contig20168.5693.1 vs. uniprot
Match: A0A8C0XF66_CASCN (LSM14 domain-containing protein n=1 Tax=Castor canadensis TaxID=51338 RepID=A0A8C0XF66_CASCN)

HSP 1 Score: 56.2 bits (134), Expect = 1.380e-8
Identity = 25/40 (62.50%), Postives = 29/40 (72.50%), Query Frame = 0
Query:    2 KRAVRSYGTESRVQGHMIPPSDETFEFVCFRGQDIKDLHV 41
            K AVRS+GTE R    +IPP DE FE++ FRG DIKDL V
Sbjct:   40 KSAVRSFGTEDRPTDRLIPPRDEVFEYIIFRGSDIKDLTV 79          
BLAST of mRNA_H-elongata_contig20168.5693.1 vs. uniprot
Match: T1FY03_HELRO (LSM14 domain-containing protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1FY03_HELRO)

HSP 1 Score: 54.3 bits (129), Expect = 4.820e-8
Identity = 24/39 (61.54%), Postives = 28/39 (71.79%), Query Frame = 0
Query:    5 VRSYGTESRVQGHMIPPSDETFEFVCFRGQDIKDLHVHD 43
            VRS+GTE R   H + P DE FE++ FRG DIKDLHV D
Sbjct:   41 VRSFGTEDRHTDHPVQPRDEIFEYIIFRGTDIKDLHVCD 79          
BLAST of mRNA_H-elongata_contig20168.5693.1 vs. uniprot
Match: A0A6J1HZ84_CUCMA (protein decapping 5-like n=1 Tax=Cucurbita maxima TaxID=3661 RepID=A0A6J1HZ84_CUCMA)

HSP 1 Score: 56.6 bits (135), Expect = 8.690e-8
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 0
Query:    3 RAVRSYGTESRVQGHMIPPSDETFEFVCFRGQDIKDLHV 41
            R VRS+GTE R  G  +PPSD+ FE++ FRG DIKDL V
Sbjct:   48 RNVRSFGTEGRKDGPQVPPSDKVFEYILFRGSDIKDLQV 86          
BLAST of mRNA_H-elongata_contig20168.5693.1 vs. uniprot
Match: V3ZYH6_LOTGI (LSM14 domain-containing protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V3ZYH6_LOTGI)

HSP 1 Score: 53.1 bits (126), Expect = 1.470e-7
Identity = 22/37 (59.46%), Postives = 27/37 (72.97%), Query Frame = 0
Query:    5 VRSYGTESRVQGHMIPPSDETFEFVCFRGQDIKDLHV 41
            VRS+GTE R     +PP +E FE++ FRG DIKDLHV
Sbjct:   41 VRSFGTEDRPTDRPVPPREEIFEYIIFRGSDIKDLHV 77          
BLAST of mRNA_H-elongata_contig20168.5693.1 vs. uniprot
Match: UPI000779FB07 (protein LSM14 homolog A-A-like n=2 Tax=Acropora TaxID=6127 RepID=UPI000779FB07)

HSP 1 Score: 55.8 bits (133), Expect = 1.620e-7
Identity = 30/59 (50.85%), Postives = 37/59 (62.71%), Query Frame = 0
Query:    5 VRSYGTESRVQGHMIPPSDETFEFVCFRGQDIKDLHVHDHDVEHKEVGRELKIHRPPDP 63
            VRS+GTE R     I P DE FEF+ FRGQDIKDLHV +   +++E    +  H P DP
Sbjct:   41 VRSFGTEDREVEKYIAPRDEQFEFIVFRGQDIKDLHVCEAPQQNQE---RVNAHLPQDP 96          
BLAST of mRNA_H-elongata_contig20168.5693.1 vs. uniprot
Match: A0A7S2UZL5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZL5_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.450e-7
Identity = 25/39 (64.10%), Postives = 31/39 (79.49%), Query Frame = 0
Query:    5 VRSYGTESRVQGHMIPPSDETFEFVCFRGQDIKDLHVHD 43
            VRS+GTESR     IPP+D+ FE++ FRG DIKDLHVH+
Sbjct:   41 VRSHGTESR-NAEFIPPNDKIFEYITFRGCDIKDLHVHE 78          
BLAST of mRNA_H-elongata_contig20168.5693.1 vs. uniprot
Match: A0A3M7Q2B1_BRAPC (LSM14-like protein (Fragment) n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7Q2B1_BRAPC)

HSP 1 Score: 53.5 bits (127), Expect = 2.540e-7
Identity = 22/37 (59.46%), Postives = 27/37 (72.97%), Query Frame = 0
Query:    5 VRSYGTESRVQGHMIPPSDETFEFVCFRGQDIKDLHV 41
            VRS+GTE R     +PP DE FE++ FRG DI+DLHV
Sbjct:   40 VRSFGTEDRPTDRPVPPRDEVFEYIIFRGSDIEDLHV 76          
BLAST of mRNA_H-elongata_contig20168.5693.1 vs. uniprot
Match: T1G906_HELRO (Uncharacterized protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1G906_HELRO)

HSP 1 Score: 55.1 bits (131), Expect = 2.990e-7
Identity = 23/37 (62.16%), Postives = 27/37 (72.97%), Query Frame = 0
Query:    5 VRSYGTESRVQGHMIPPSDETFEFVCFRGQDIKDLHV 41
            VRS+GTE R   H +P  DE FE++ FRG DIKDLHV
Sbjct:   45 VRSFGTEDRPTDHPVPARDEVFEYIIFRGSDIKDLHV 81          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20168.5693.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRU5_ECTSI7.320e-1274.36Novel Sm-like protein with long N-and C-terminal d... [more]
A0A836C876_9STRA3.390e-966.67Scd6-like Sm domain-containing protein n=1 Tax=Tri... [more]
A0A8C0XF66_CASCN1.380e-862.50LSM14 domain-containing protein n=1 Tax=Castor can... [more]
T1FY03_HELRO4.820e-861.54LSM14 domain-containing protein n=1 Tax=Helobdella... [more]
A0A6J1HZ84_CUCMA8.690e-861.54protein decapping 5-like n=1 Tax=Cucurbita maxima ... [more]
V3ZYH6_LOTGI1.470e-759.46LSM14 domain-containing protein n=1 Tax=Lottia gig... [more]
UPI000779FB071.620e-750.85protein LSM14 homolog A-A-like n=2 Tax=Acropora Ta... [more]
A0A7S2UZL5_9STRA2.450e-764.10Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A3M7Q2B1_BRAPC2.540e-759.46LSM14-like protein (Fragment) n=1 Tax=Brachionus p... [more]
T1G906_HELRO2.990e-762.16Uncharacterized protein n=1 Tax=Helobdella robusta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.100coord: 1..47
e-value: 3.8E-13
score: 50.9
NoneNo IPR availablePANTHERPTHR13586SCD6 PROTEIN-RELATEDcoord: 4..46
NoneNo IPR availablePANTHERPTHR13586:SF0TRAILER HITCH, ISOFORM Hcoord: 4..46
IPR025609Lsm14-like, N-terminalPFAMPF12701LSM14coord: 4..43
e-value: 1.0E-12
score: 48.0
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 4..45

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20168contigH-elongata_contig20168:373..561 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20168.5693.1mRNA_H-elongata_contig20168.5693.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig20168 373..570 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig20168.5693.1 ID=prot_H-elongata_contig20168.5693.1|Name=mRNA_H-elongata_contig20168.5693.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
MKRAVRSYGTESRVQGHMIPPSDETFEFVCFRGQDIKDLHVHDHDVEHKE
VGRELKIHRPPDP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025609Lsm14-like_N
IPR010920LSM_dom_sf