prot_H-elongata_contig201296.5675.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig201296.5675.1
Unique Nameprot_H-elongata_contig201296.5675.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length110
Homology
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BLAST of mRNA_H-elongata_contig201296.5675.1 vs. uniprot
Match: D8LK66_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK66_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 4.210e-39
Identity = 70/103 (67.96%), Postives = 81/103 (78.64%), Query Frame = 0 
Query:    7 GWLAVSPLLGAHTSAATASLEDAAKTLVPAWGLSIPAAIALRSLLKGGEVPPVGFAAASMVFTFVALLSWRGLYTTVTPTPEGDKDANILDVFRMITTLVQRW 109
            GWLAVSPLLGA+T +AT +   AAK L+PAWG+SIP  I LR+L KGGEVPPV FA  SM+FT  AL++WR LYT V PT EGDK A +LD FRMITTL+QRW
Sbjct:  260 GWLAVSPLLGAYTRSATETPGGAAKALLPAWGISIPVGIFLRALSKGGEVPPVPFAVTSMIFTLAALMAWRQLYTAVNPTGEGDKQAGLLDGFRMITTLLQRW 362
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BLAST of mRNA_H-elongata_contig201296.5675.1 vs. uniprot
Match: A0A835ZDH1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDH1_9STRA)

HSP 1 Score: 109 bits (273), Expect = 3.840e-27
Identity = 56/104 (53.85%), Postives = 73/104 (70.19%), Query Frame = 0 
Query:    7 GWLAVSPLLGAHTSAATASLEDAAKTLVPAWGLSIPAAIALRSLLKGGEVPPVGFAAASMVFTFVALLSWRGLYTTVTPTPEGD-KDANILDVFRMITTLVQRW 109
            GWL +SPLLGA+T+ ATA+ +D   TLVPAW +SIP A+A+R  +KG +VPPV F   S++ T   L +WRGLY  + PT   + K   ILD FRMITTL++RW
Sbjct:  170 GWLGLSPLLGAYTNQATATQKDMISTLVPAWAVSIPVALAIRGAVKG-DVPPVPFIIVSLIATGSLLAAWRGLYVVINPTSTAETKRGGILDGFRMITTLLRRW 272
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig201296.5675.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LK66_ECTSI4.210e-3967.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZDH1_9STRA3.840e-2753.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021414Protein of unknown function DUF3054PFAMPF11255DUF3054coord: 6..79
e-value: 4.7E-10
score: 40.0
NoneNo IPR availablePANTHERPTHR35283FAMILY NOT NAMEDcoord: 3..109
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 58..76
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..31
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 77..109
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 52..57
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 32..51
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17
NoneNo IPR availableTMHMMTMhelixcoord: 58..80

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig201296contigH-elongata_contig201296:499..828 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig201296.5675.1mRNA_H-elongata_contig201296.5675.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig201296 499..828 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig201296.5675.1 ID=prot_H-elongata_contig201296.5675.1|Name=mRNA_H-elongata_contig201296.5675.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
SNPTDAGWLAVSPLLGAHTSAATASLEDAAKTLVPAWGLSIPAAIALRSL
LKGGEVPPVGFAAASMVFTFVALLSWRGLYTTVTPTPEGDKDANILDVFR
MITTLVQRW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021414DUF3054