mRNA_H-elongata_contig201296.5675.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig201296.5675.1
Unique NamemRNA_H-elongata_contig201296.5675.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig201296.5675.1 vs. uniprot
Match: D8LK66_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK66_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 4.210e-39
Identity = 70/103 (67.96%), Postives = 81/103 (78.64%), Query Frame = 1 
Query:   19 GWLAVSPLLGAHTSAATASLEDAAKTLVPAWGLSIPAAIALRSLLKGGEVPPVGFAAASMVFTFVALLSWRGLYTTVTPTPEGDKDANILDVFRMITTLVQRW 327
            GWLAVSPLLGA+T +AT +   AAK L+PAWG+SIP  I LR+L KGGEVPPV FA  SM+FT  AL++WR LYT V PT EGDK A +LD FRMITTL+QRW
Sbjct:  260 GWLAVSPLLGAYTRSATETPGGAAKALLPAWGISIPVGIFLRALSKGGEVPPVPFAVTSMIFTLAALMAWRQLYTAVNPTGEGDKQAGLLDGFRMITTLLQRW 362
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BLAST of mRNA_H-elongata_contig201296.5675.1 vs. uniprot
Match: A0A835ZDH1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDH1_9STRA)

HSP 1 Score: 109 bits (273), Expect = 3.840e-27
Identity = 56/104 (53.85%), Postives = 73/104 (70.19%), Query Frame = 1 
Query:   19 GWLAVSPLLGAHTSAATASLEDAAKTLVPAWGLSIPAAIALRSLLKGGEVPPVGFAAASMVFTFVALLSWRGLYTTVTPTPEGD-KDANILDVFRMITTLVQRW 327
            GWL +SPLLGA+T+ ATA+ +D   TLVPAW +SIP A+A+R  +KG +VPPV F   S++ T   L +WRGLY  + PT   + K   ILD FRMITTL++RW
Sbjct:  170 GWLGLSPLLGAYTNQATATQKDMISTLVPAWAVSIPVALAIRGAVKG-DVPPVPFIIVSLIATGSLLAAWRGLYVVINPTSTAETKRGGILDGFRMITTLLRRW 272
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig201296.5675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LK66_ECTSI4.210e-3967.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZDH1_9STRA3.840e-2753.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig201296contigH-elongata_contig201296:499..828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.0
Seed ortholog evalue1.1e-32
Seed eggNOG ortholog2880.D8LK66
EggNOG free text desc.Protein of unknown function (DUF3054)
EggNOG OGs2CM8N@1,2QPMJ@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size330
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930132.7623193-CDS-H-elongata_contig201296:498..8281622930132.7623193-CDS-H-elongata_contig201296:498..828Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201296 499..828 -
1691679293.3092237-CDS-H-elongata_contig201296:498..8281691679293.3092237-CDS-H-elongata_contig201296:498..828Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201296 499..828 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig201296.5675.1prot_H-elongata_contig201296.5675.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig201296 499..828 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig201296.5675.1

>prot_H-elongata_contig201296.5675.1 ID=prot_H-elongata_contig201296.5675.1|Name=mRNA_H-elongata_contig201296.5675.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
SNPTDAGWLAVSPLLGAHTSAATASLEDAAKTLVPAWGLSIPAAIALRSL
LKGGEVPPVGFAAASMVFTFVALLSWRGLYTTVTPTPEGDKDANILDVFR
MITTLVQRW*
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mRNA from alignment at H-elongata_contig201296:499..828-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig201296.5675.1 ID=mRNA_H-elongata_contig201296.5675.1|Name=mRNA_H-elongata_contig201296.5675.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=330bp|location=Sequence derived from alignment at H-elongata_contig201296:499..828- (Himanthalia elongata Himel1 dioecious)
TCTAATCCGACGGATGCAGGTTGGTTGGCCGTATCCCCTCTACTCGGGGC
CCACACGTCGGCCGCTACCGCAAGCCTCGAGGACGCGGCGAAGACCCTTG
TCCCCGCCTGGGGGCTCTCGATACCCGCGGCCATCGCCCTGCGGAGCCTG
CTGAAGGGGGGCGAGGTTCCTCCCGTGGGTTTCGCGGCGGCCTCGATGGT
CTTCACGTTTGTTGCCCTCCTATCGTGGCGAGGGCTGTACACCACGGTCA
CCCCCACGCCGGAGGGGGACAAGGATGCGAACATTCTCGACGTTTTCCGC
ATGATCACTACGCTGGTCCAGCGTTGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig201296:499..828-

>mRNA_H-elongata_contig201296.5675.1 ID=mRNA_H-elongata_contig201296.5675.1|Name=mRNA_H-elongata_contig201296.5675.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig201296:499..828- (Himanthalia elongata Himel1 dioecious)
TCTAATCCGACGGATGCAGGTTGGTTGGCCGTATCCCCTCTACTCGGGGC
CCACACGTCGGCCGCTACCGCAAGCCTCGAGGACGCGGCGAAGACCCTTG
TCCCCGCCTGGGGGCTCTCGATACCCGCGGCCATCGCCCTGCGGAGCCTG
CTGAAGGGGGGCGAGGTTCCTCCCGTGGGTTTCGCGGCGGCCTCGATGGT
CTTCACGTTTGTTGCCCTCCTATCGTGGCGAGGGCTGTACACCACGGTCA
CCCCCACGCCGGAGGGGGACAAGGATGCGAACATTCTCGACGTTTTCCGC
ATGATCACTACGCTGGTCCAGCGTTGGTAGTCTAATCCGACGGATGCAGG
TTGGTTGGCCGTATCCCCTCTACTCGGGGCCCACACGTCGGCCGCTACCG
CAAGCCTCGAGGACGCGGCGAAGACCCTTGTCCCCGCCTGGGGGCTCTCG
ATACCCGCGGCCATCGCCCTGCGGAGCCTGCTGAAGGGGGGCGAGGTTCC
TCCCGTGGGTTTCGCGGCGGCCTCGATGGTCTTCACGTTTGTTGCCCTCC
TATCGTGGCGAGGGCTGTACACCACGGTCACCCCCACGCCGGAGGGGGAC
AAGGATGCGAACATTCTCGACGTTTTCCGCATGATCACTACGCTGGTCCA
GCGTTGGTAG
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