prot_H-elongata_contig200669.5650.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig200669.5650.1
Unique Nameprot_H-elongata_contig200669.5650.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length89
Homology
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BLAST of mRNA_H-elongata_contig200669.5650.1 vs. uniprot
Match: A0A3S4Q8K1_9ACAR (Retrovirus-related Pol polyprotein from transposon TNT 1-94-like protein (Fragment) n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S4Q8K1_9ACAR)

HSP 1 Score: 58.9 bits (141), Expect = 3.820e-8
Identity = 29/85 (34.12%), Postives = 52/85 (61.18%), Query Frame = 0 
Query:    5 WITDSGCSRFMTPSADYMANYR--EGGGVVRIADGRVMPIEGIGNLPMSLWSGKDWVKAILPNVAHVPLLGYNLMFLKMMADRGH 87
            WI DSG S  ++   +++ +++  E    +RIA+ +V+ +EG+GN+  +++ GK W  A + NV +VP  G NL  +   AD+G+
Sbjct:   10 WIADSGASEHISFHKEWLQDFKPIETKRELRIANNKVINVEGVGNILATVFDGKRWSNATIYNVLYVPESGVNLFSIGAAADKGY 94
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BLAST of mRNA_H-elongata_contig200669.5650.1 vs. uniprot
Match: UPI001CA7C5E7 (uncharacterized protein LOC122504102 n=1 Tax=Leptopilina heterotoma TaxID=63436 RepID=UPI001CA7C5E7)

HSP 1 Score: 51.2 bits (121), Expect = 2.030e-5
Identity = 27/88 (30.68%), Postives = 47/88 (53.41%), Query Frame = 0 
Query:    4 RWITDSGCSRFMTPSADYMA-----NYREGGGVVRIADGRVMPIEGIGNLPMSLWSGKDWVKAILPNVAHVPLLGYNLMFLKMMADRG 86
            RW  DSG +  M+ + +        N++     V++ +G ++ ++GIG + +  W+GK+W +  L NV  VP L  NL  L  + D+G
Sbjct:  889 RWWLDSGATEHMSFNQENFVELNVINHKRH---VKVGNGTLLEVKGIGKVKLEAWNGKEWRETELGNVLFVPDLDVNLFSLSAVLDKG 973
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BLAST of mRNA_H-elongata_contig200669.5650.1 vs. uniprot
Match: A0A0B1PCE4_UNCNE (Uncharacterized protein n=1 Tax=Uncinula necator TaxID=52586 RepID=A0A0B1PCE4_UNCNE)

HSP 1 Score: 49.3 bits (116), Expect = 8.980e-5
Identity = 30/75 (40.00%), Postives = 43/75 (57.33%), Query Frame = 0 
Query:    5 WITDSGCSRFMTPSADYMANYREGGGVVRIADGRVMPIEGIGNLPMSLWSGKDW-VKAILPNVAHVP-LLGYNLM 77
            WI DSGC   MT   + ++      GVV IA+GR +P+EG GNL ++L +     +   + NV +VP L G NL+
Sbjct:  322 WILDSGCFAHMTSRKELLSPLNHHKGVVTIANGRQIPVEGKGNLSLNLRTSTGGEISVTIRNVLYVPELKGGNLI 396
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig200669.5650.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A3S4Q8K1_9ACAR3.820e-834.12Retrovirus-related Pol polyprotein from transposon... [more]
UPI001CA7C5E72.030e-530.68uncharacterized protein LOC122504102 n=1 Tax=Lepto... [more]
A0A0B1PCE4_UNCNE8.980e-540.00Uncharacterized protein n=1 Tax=Uncinula necator T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..57
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 80..88
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 58..79

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig200669contigH-elongata_contig200669:184..450 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig200669.5650.1mRNA_H-elongata_contig200669.5650.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig200669 184..468 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig200669.5650.1 ID=prot_H-elongata_contig200669.5650.1|Name=mRNA_H-elongata_contig200669.5650.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
MVERWITDSGCSRFMTPSADYMANYREGGGVVRIADGRVMPIEGIGNLPM
SLWSGKDWVKAILPNVAHVPLLGYNLMFLKMMADRGHK*
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