mRNA_H-elongata_contig200669.5650.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig200669.5650.1
Unique NamemRNA_H-elongata_contig200669.5650.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig200669.5650.1 vs. uniprot
Match: A0A3S4Q8K1_9ACAR (Retrovirus-related Pol polyprotein from transposon TNT 1-94-like protein (Fragment) n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S4Q8K1_9ACAR)

HSP 1 Score: 58.9 bits (141), Expect = 4.790e-8
Identity = 29/85 (34.12%), Postives = 52/85 (61.18%), Query Frame = 1 
Query:   31 WITDSGCSRFMTPSADYMANYR--EGGGVVRIADGRVMPIEGIGNLPMSLWSGKDWVKAILPNVAHVPLLGYNLMFLKMMADRGH 279
            WI DSG S  ++   +++ +++  E    +RIA+ +V+ +EG+GN+  +++ GK W  A + NV +VP  G NL  +   AD+G+
Sbjct:   10 WIADSGASEHISFHKEWLQDFKPIETKRELRIANNKVINVEGVGNILATVFDGKRWSNATIYNVLYVPESGVNLFSIGAAADKGY 94
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BLAST of mRNA_H-elongata_contig200669.5650.1 vs. uniprot
Match: UPI001CA7C5E7 (uncharacterized protein LOC122504102 n=1 Tax=Leptopilina heterotoma TaxID=63436 RepID=UPI001CA7C5E7)

HSP 1 Score: 51.2 bits (121), Expect = 2.540e-5
Identity = 27/88 (30.68%), Postives = 47/88 (53.41%), Query Frame = 1 
Query:   28 RWITDSGCSRFMTPSADYMA-----NYREGGGVVRIADGRVMPIEGIGNLPMSLWSGKDWVKAILPNVAHVPLLGYNLMFLKMMADRG 276
            RW  DSG +  M+ + +        N++     V++ +G ++ ++GIG + +  W+GK+W +  L NV  VP L  NL  L  + D+G
Sbjct:  889 RWWLDSGATEHMSFNQENFVELNVINHKRH---VKVGNGTLLEVKGIGKVKLEAWNGKEWRETELGNVLFVPDLDVNLFSLSAVLDKG 973
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig200669.5650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A3S4Q8K1_9ACAR4.790e-834.12Retrovirus-related Pol polyprotein from transposon... [more]
UPI001CA7C5E72.540e-530.68uncharacterized protein LOC122504102 n=1 Tax=Lepto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig200669contigH-elongata_contig200669:184..468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size285
Cds size267
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930129.3670244-CDS-H-elongata_contig200669:183..4501622930129.3670244-CDS-H-elongata_contig200669:183..450Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig200669 184..450 -
1691679292.4124057-CDS-H-elongata_contig200669:183..4501691679292.4124057-CDS-H-elongata_contig200669:183..450Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig200669 184..450 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930129.5786374-UTR-H-elongata_contig200669:450..4681622930129.5786374-UTR-H-elongata_contig200669:450..468Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig200669 451..468 -
1691679292.4209306-UTR-H-elongata_contig200669:450..4681691679292.4209306-UTR-H-elongata_contig200669:450..468Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig200669 451..468 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig200669.5650.1prot_H-elongata_contig200669.5650.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig200669 184..450 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig200669.5650.1

>prot_H-elongata_contig200669.5650.1 ID=prot_H-elongata_contig200669.5650.1|Name=mRNA_H-elongata_contig200669.5650.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
MVERWITDSGCSRFMTPSADYMANYREGGGVVRIADGRVMPIEGIGNLPM
SLWSGKDWVKAILPNVAHVPLLGYNLMFLKMMADRGHK*
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mRNA from alignment at H-elongata_contig200669:184..468-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig200669.5650.1 ID=mRNA_H-elongata_contig200669.5650.1|Name=mRNA_H-elongata_contig200669.5650.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=285bp|location=Sequence derived from alignment at H-elongata_contig200669:184..468- (Himanthalia elongata Himel1 dioecious)
GAGCTACCACTGGAAGCTATGGTTGAACGATGGATCACTGATAGTGGCTG
CTCACGTTTTATGACGCCTTCCGCTGACTATATGGCTAACTATCGCGAGG
GTGGAGGTGTGGTAAGAATTGCCGACGGCCGAGTGATGCCGATCGAAGGC
ATTGGGAATTTACCGATGAGCTTGTGGTCTGGTAAGGATTGGGTTAAGGC
AATTTTACCGAATGTCGCTCATGTCCCACTACTGGGATACAACTTGATGT
TTCTGAAAATGATGGCTGATCGTGGTCACAAGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig200669:184..468-

>mRNA_H-elongata_contig200669.5650.1 ID=mRNA_H-elongata_contig200669.5650.1|Name=mRNA_H-elongata_contig200669.5650.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig200669:184..468- (Himanthalia elongata Himel1 dioecious)
ATGGTTGAACGATGGATCACTGATAGTGGCTGCTCACGTTTTATGACGCC
TTCCGCTGACTATATGGCTAACTATCGCGAGGGTGGAGGTGTGGTAAGAA
TTGCCGACGGCCGAGTGATGCCGATCGAAGGCATTGGGAATTTACCGATG
AGCTTGTGGTCTGGTAAGGATTGGGTTAAGGCAATTTTACCGAATGTCGC
TCATGTCCCACTACTGGGATACAACTTGATGTTTCTGAAAATGATGGCTG
ATCGTGGTCACAAGTAAATGGTTGAACGATGGATCACTGATAGTGGCTGC
TCACGTTTTATGACGCCTTCCGCTGACTATATGGCTAACTATCGCGAGGG
TGGAGGTGTGGTAAGAATTGCCGACGGCCGAGTGATGCCGATCGAAGGCA
TTGGGAATTTACCGATGAGCTTGTGGTCTGGTAAGGATTGGGTTAAGGCA
ATTTTACCGAATGTCGCTCATGTCCCACTACTGGGATACAACTTGATGTT
TCTGAAAATGATGGCTGATCGTGGTCACAAGTAA
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