prot_H-elongata_contig200212.5639.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig200212.5639.1
Unique Nameprot_H-elongata_contig200212.5639.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length38
Homology
BLAST of mRNA_H-elongata_contig200212.5639.1 vs. uniprot
Match: A0A6H5KRG7_9PHAE (GP-PDE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRG7_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 3.770e-13
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 0
Query:    1 MASFVEAVRLGVDMIEFDVLTTVDGVVICHHDPLIEES 38
            M SF+EAVRLGVD+IEFDVLTT DGVVICHHDPLIEES
Sbjct:  134 MPSFLEAVRLGVDVIEFDVLTTSDGVVICHHDPLIEES 171          
BLAST of mRNA_H-elongata_contig200212.5639.1 vs. uniprot
Match: A0A2E5ZV33_9EURY (GP-PDE domain-containing protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E5ZV33_9EURY)

HSP 1 Score: 48.1 bits (113), Expect = 2.450e-5
Identity = 20/30 (66.67%), Postives = 25/30 (83.33%), Query Frame = 0
Query:    6 EAVRLGVDMIEFDVLTTVDGVVICHHDPLI 35
            EA+ LGVDMIEFDV +T DGV++CHHD  +
Sbjct:   26 EAIELGVDMIEFDVRSTKDGVLVCHHDSTV 55          
BLAST of mRNA_H-elongata_contig200212.5639.1 vs. uniprot
Match: A0A1J5U4N1_9ARCH (GP-PDE domain-containing protein n=1 Tax=Marine Group III euryarchaeote CG-Epi3 TaxID=1888997 RepID=A0A1J5U4N1_9ARCH)

HSP 1 Score: 47.0 bits (110), Expect = 6.450e-5
Identity = 19/31 (61.29%), Postives = 26/31 (83.87%), Query Frame = 0
Query:    6 EAVRLGVDMIEFDVLTTVDGVVICHHDPLIE 36
            EA++LGVDMIEFDV +T DG ++CHHD  ++
Sbjct:   26 EAIKLGVDMIEFDVRSTKDGRLVCHHDATVD 56          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig200212.5639.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KRG7_9PHAE3.770e-1389.47GP-PDE domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A2E5ZV33_9EURY2.450e-566.67GP-PDE domain-containing protein n=1 Tax=Euryarcha... [more]
A0A1J5U4N1_9ARCH6.450e-561.29GP-PDE domain-containing protein n=1 Tax=Marine Gr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR030395Glycerophosphodiester phosphodiesterase domainPFAMPF03009GDPDcoord: 1..37
e-value: 3.7E-11
score: 43.2
IPR030395Glycerophosphodiester phosphodiesterase domainPROSITEPS51704GP_PDEcoord: 1..38
score: 14.313
IPR017946PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamilyGENE3D3.20.20.190coord: 1..37
e-value: 1.3E-10
score: 43.6
IPR017946PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamilySUPERFAMILY51695PLC-like phosphodiesterasescoord: 1..36

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig200212contigH-elongata_contig200212:840..953 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig200212.5639.1mRNA_H-elongata_contig200212.5639.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig200212 840..971 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig200212.5639.1 ID=prot_H-elongata_contig200212.5639.1|Name=mRNA_H-elongata_contig200212.5639.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=38bp
MASFVEAVRLGVDMIEFDVLTTVDGVVICHHDPLIEES
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR030395GP_PDE_dom
IPR017946PLC-like_Pdiesterase_TIM-brl