mRNA_H-elongata_contig200212.5639.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig200212.5639.1
Unique NamemRNA_H-elongata_contig200212.5639.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig200212.5639.1 vs. uniprot
Match: A0A6H5KRG7_9PHAE (GP-PDE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRG7_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 4.260e-17
Identity = 39/44 (88.64%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:    1 HLEGNTMASFVEAVRLGVDMIEFDVLTTVDGVVICHHDPLIEES 132
            H+EGNTM SF+EAVRLGVD+IEFDVLTT DGVVICHHDPLIEES
Sbjct:  128 HVEGNTMPSFLEAVRLGVDVIEFDVLTTSDGVVICHHDPLIEES 171
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BLAST of mRNA_H-elongata_contig200212.5639.1 vs. uniprot
Match: UPI0015BF9F79 (glycerophosphodiester phosphodiesterase n=3 Tax=Paenarthrobacter nitroguajacolicus TaxID=211146 RepID=UPI0015BF9F79)

HSP 1 Score: 51.2 bits (121), Expect = 2.800e-6
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    1 HLEGNTMASFVEAVRLGVDMIEFDVLTTVDGVVICHHDPLIEE 129
            H  GNT+ASFVEA+RLGVD IE DV  T DG +   HD +I++
Sbjct:   13 HRHGNTLASFVEALRLGVDAIEVDVWLTSDGQLALRHDAVIDD 55
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BLAST of mRNA_H-elongata_contig200212.5639.1 vs. uniprot
Match: A0A2E5ZV33_9EURY (GP-PDE domain-containing protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E5ZV33_9EURY)

HSP 1 Score: 49.7 bits (117), Expect = 8.780e-6
Identity = 21/37 (56.76%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:   13 NTMASFVEAVRLGVDMIEFDVLTTVDGVVICHHDPLI 123
            N +    EA+ LGVDMIEFDV +T DGV++CHHD  +
Sbjct:   19 NVLTGIQEAIELGVDMIEFDVRSTKDGVLVCHHDSTV 55
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BLAST of mRNA_H-elongata_contig200212.5639.1 vs. uniprot
Match: A0A356RGC1_9BACT (GP-PDE domain-containing protein (Fragment) n=1 Tax=Nitrospiraceae bacterium TaxID=2026770 RepID=A0A356RGC1_9BACT)

HSP 1 Score: 47.0 bits (110), Expect = 2.220e-5
Identity = 21/44 (47.73%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:    1 HLEGNTMASFVEAVRLGVDMIEFDVLTTVDGVVICHHDPLIEES 132
            H   NT+AS   A++LGVDM+EFDV  T DG ++  HD L++ +
Sbjct:   47 HAPENTLASLSLAIKLGVDMVEFDVRRTADGALVLLHDDLVDRT 90
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BLAST of mRNA_H-elongata_contig200212.5639.1 vs. uniprot
Match: A0A1J5U4N1_9ARCH (GP-PDE domain-containing protein n=1 Tax=Marine Group III euryarchaeote CG-Epi3 TaxID=1888997 RepID=A0A1J5U4N1_9ARCH)

HSP 1 Score: 48.1 bits (113), Expect = 3.200e-5
Identity = 20/38 (52.63%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:   13 NTMASFVEAVRLGVDMIEFDVLTTVDGVVICHHDPLIE 126
            N +    EA++LGVDMIEFDV +T DG ++CHHD  ++
Sbjct:   19 NVLIGIQEAIKLGVDMIEFDVRSTKDGRLVCHHDATVD 56
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BLAST of mRNA_H-elongata_contig200212.5639.1 vs. uniprot
Match: A0A7X7S0E8_9BACT (Glycerophosphodiester phosphodiesterase n=1 Tax=Fibrobacter sp. TaxID=35828 RepID=A0A7X7S0E8_9BACT)

HSP 1 Score: 47.0 bits (110), Expect = 8.580e-5
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:   13 NTMASFVEAVRLGVDMIEFDVLTTVDGVVICHHDPLI 123
            NT+ SF++AV LG DM+EFDV  T DG ++ +HDP I
Sbjct:   22 NTIDSFIKAVSLGADMVEFDVRRTKDGKLVVNHDPFI 58
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BLAST of mRNA_H-elongata_contig200212.5639.1 vs. uniprot
Match: UPI0016663861 (hypothetical protein n=1 Tax=Paenarthrobacter histidinolovorans TaxID=43664 RepID=UPI0016663861)

HSP 1 Score: 47.0 bits (110), Expect = 9.240e-5
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:   10 GNTMASFVEAVRLGVDMIEFDVLTTVDGVVICHHDPLIEES 132
            GNT+ASFVEA+RLG D IE DV  T DG +   HD +I ++
Sbjct:   16 GNTLASFVEALRLGADAIEVDVWLTSDGQLALRHDAVIRDA 56
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig200212.5639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KRG7_9PHAE4.260e-1788.64GP-PDE domain-containing protein n=2 Tax=Ectocarpu... [more]
UPI0015BF9F792.800e-658.14glycerophosphodiester phosphodiesterase n=3 Tax=Pa... [more]
A0A2E5ZV33_9EURY8.780e-656.76GP-PDE domain-containing protein n=1 Tax=Euryarcha... [more]
A0A356RGC1_9BACT2.220e-547.73GP-PDE domain-containing protein (Fragment) n=1 Ta... [more]
A0A1J5U4N1_9ARCH3.200e-552.63GP-PDE domain-containing protein n=1 Tax=Marine Gr... [more]
A0A7X7S0E8_9BACT8.580e-556.76Glycerophosphodiester phosphodiesterase n=1 Tax=Fi... [more]
UPI00166638619.240e-556.10hypothetical protein n=1 Tax=Paenarthrobacter hist... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig200212contigH-elongata_contig200212:840..971 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size114
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930128.0657814-CDS-H-elongata_contig200212:839..9531622930128.0657814-CDS-H-elongata_contig200212:839..953Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig200212 840..953 -
1691679291.8040478-CDS-H-elongata_contig200212:839..9531691679291.8040478-CDS-H-elongata_contig200212:839..953Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig200212 840..953 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930128.0787778-UTR-H-elongata_contig200212:953..9711622930128.0787778-UTR-H-elongata_contig200212:953..971Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig200212 954..971 -
1691679291.811609-UTR-H-elongata_contig200212:953..9711691679291.811609-UTR-H-elongata_contig200212:953..971Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig200212 954..971 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig200212.5639.1prot_H-elongata_contig200212.5639.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig200212 840..953 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig200212.5639.1

>prot_H-elongata_contig200212.5639.1 ID=prot_H-elongata_contig200212.5639.1|Name=mRNA_H-elongata_contig200212.5639.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=38bp
MASFVEAVRLGVDMIEFDVLTTVDGVVICHHDPLIEES
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mRNA from alignment at H-elongata_contig200212:840..971-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig200212.5639.1 ID=mRNA_H-elongata_contig200212.5639.1|Name=mRNA_H-elongata_contig200212.5639.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=132bp|location=Sequence derived from alignment at H-elongata_contig200212:840..971- (Himanthalia elongata Himel1 dioecious)
CACTTGGAGGGGAACACAATGGCCTCCTTCGTCGAGGCCGTCCGGCTCGG
TGTGGACATGATCGAGTTCGATGTGCTGACCACCGTTGACGGGGTGGTGA
TCTGCCACCACGACCCGCTCATCGAAGAGTCC
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Coding sequence (CDS) from alignment at H-elongata_contig200212:840..971-

>mRNA_H-elongata_contig200212.5639.1 ID=mRNA_H-elongata_contig200212.5639.1|Name=mRNA_H-elongata_contig200212.5639.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=228bp|location=Sequence derived from alignment at H-elongata_contig200212:840..971- (Himanthalia elongata Himel1 dioecious)
ATGGCCTCCTTCGTCGAGGCCGTCCGGCTCGGTGTGGACATGATCGAGTT
CGATGTGCTGACCACCGTTGACGGGGTGGTGATCTGCCACCACGACCCGC
TCATCGAAGAGTCCATGGCCTCCTTCGTCGAGGCCGTCCGGCTCGGTGTG
GACATGATCGAGTTCGATGTGCTGACCACCGTTGACGGGGTGGTGATCTG
CCACCACGACCCGCTCATCGAAGAGTCC
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