prot_H-elongata_contig199970.5627.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig199970.5627.1
Unique Nameprot_H-elongata_contig199970.5627.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length67
Homology
BLAST of mRNA_H-elongata_contig199970.5627.1 vs. uniprot
Match: D7FPC2_ECTSI (Tudor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPC2_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 2.230e-24
Identity = 47/53 (88.68%), Postives = 52/53 (98.11%), Query Frame = 0
Query:    8 QQQVVDEIYSRCDHVAPWAPGTSRVPSTAFCLLMKLFVMKLTRPQMNEILVHE 60
            +++VVDEIYS CDHVAPWAPGTSRVPS+AFCLLMKLFV+KLTRPQMNEILVHE
Sbjct:  118 REKVVDEIYSYCDHVAPWAPGTSRVPSSAFCLLMKLFVIKLTRPQMNEILVHE 170          
BLAST of mRNA_H-elongata_contig199970.5627.1 vs. uniprot
Match: A0A6H5KEK1_9PHAE (Tudor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK1_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.950e-23
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 0
Query:   10 QVVDEIYSRCDHVAPWAPGTSRVPSTAFCLLMKLFVMKLTRPQMNEILVHE 60
            +VVDEIY  CDHVAPWAPGTSRVPS+AFCLLMKLFV+KLTRPQMNEILVHE
Sbjct:   88 EVVDEIYRYCDHVAPWAPGTSRVPSSAFCLLMKLFVIKLTRPQMNEILVHE 138          
BLAST of mRNA_H-elongata_contig199970.5627.1 vs. uniprot
Match: A0A3R7B771_9STRA (Pre-mRNA-splicing factor 38 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7B771_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 4.430e-14
Identity = 33/53 (62.26%), Postives = 37/53 (69.81%), Query Frame = 0
Query:   10 QVVDEIYSRCDHVAPWAPGTSRVPSTAFCLLMKLFVMKLTRPQMNEILVHEVG 62
            +VVDEIY R DH  PWA GTSR+PST FCLLMK   M+LT  QM  +L H V 
Sbjct:   66 EVVDEIYYRVDHAEPWAAGTSRIPSTCFCLLMKFCTMRLTVNQMQGLLKHVVS 118          
BLAST of mRNA_H-elongata_contig199970.5627.1 vs. uniprot
Match: UPI0009AA8545 (pre-mRNA splicing factor SR-like 1 n=1 Tax=Zea mays TaxID=4577 RepID=UPI0009AA8545)

HSP 1 Score: 69.3 bits (168), Expect = 1.790e-13
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 0
Query:   10 QVVDEIYSRCDHVAPWAPGTSRVPSTAFCLLMKLFVMKLTRPQMNEILVHE 60
            +VVDEIY++ DHV PW  G  R PS+AFCLL KLF MKLT  QM+ +L H+
Sbjct:   63 EVVDEIYNQVDHVEPWMTGNCRGPSSAFCLLYKLFTMKLTVKQMHNLLKHQ 113          
BLAST of mRNA_H-elongata_contig199970.5627.1 vs. uniprot
Match: W7TLT3_9STRA (Pre-mRNA-splicing factor 38 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TLT3_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.930e-13
Identity = 29/50 (58.00%), Postives = 39/50 (78.00%), Query Frame = 0
Query:   10 QVVDEIYSRCDHVAPWAPGTSRVPSTAFCLLMKLFVMKLTRPQMNEILVH 59
            +V+DE+Y++  HV PWA GTSR+PSTAFCLL K F M+LT+ Q+  +L H
Sbjct:   69 EVIDEVYNKVTHVEPWATGTSRLPSTAFCLLFKFFTMRLTKKQVTGLLTH 118          
BLAST of mRNA_H-elongata_contig199970.5627.1 vs. uniprot
Match: A0A3L6D7C0_MAIZE (Pre-mRNA-splicing factor 38 n=1 Tax=Zea mays TaxID=4577 RepID=A0A3L6D7C0_MAIZE)

HSP 1 Score: 68.2 bits (165), Expect = 1.980e-13
Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 0
Query:   10 QVVDEIYSRCDHVAPWAPGTSRVPSTAFCLLMKLFVMKLTRPQMNEILVHE 60
            + VDEIY++ DHV PW  G  R PS+AFCLL KLF MKLT  QM+++L H+
Sbjct:   26 EAVDEIYNQVDHVEPWMTGNCRGPSSAFCLLYKLFTMKLTVKQMHDMLKHQ 76          
BLAST of mRNA_H-elongata_contig199970.5627.1 vs. uniprot
Match: UPI001D1A5254 (pre-mRNA splicing factor SR-like 1 isoform X2 n=5 Tax=Pooideae TaxID=147368 RepID=UPI001D1A5254)

HSP 1 Score: 68.6 bits (166), Expect = 2.350e-13
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = 0
Query:   10 QVVDEIYSRCDHVAPWAPGTSRVPSTAFCLLMKLFVMKLTRPQMNEILVH 59
            +V+DEIY++ DHV PW  G  R PSTAFCLL KLF MKLT  QM+ +L H
Sbjct:   39 EVIDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKLFTMKLTVNQMHGLLKH 88          
BLAST of mRNA_H-elongata_contig199970.5627.1 vs. uniprot
Match: A1YKG0_BRASY (Pre-mRNA-splicing factor 38 n=1 Tax=Brachypodium sylvaticum TaxID=29664 RepID=A1YKG0_BRASY)

HSP 1 Score: 69.3 bits (168), Expect = 3.290e-13
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = 0
Query:   10 QVVDEIYSRCDHVAPWAPGTSRVPSTAFCLLMKLFVMKLTRPQMNEILVH 59
            +V+DEIY++ DHV PW  G  R PSTAFCLL KLF MKLT  QM+ +L H
Sbjct:   39 EVIDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKLFTMKLTMNQMHGLLKH 88          
BLAST of mRNA_H-elongata_contig199970.5627.1 vs. uniprot
Match: A0A4D9DAU1_9STRA (Pre-mRNA-splicing factor 38 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAU1_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 3.760e-13
Identity = 29/50 (58.00%), Postives = 39/50 (78.00%), Query Frame = 0
Query:   10 QVVDEIYSRCDHVAPWAPGTSRVPSTAFCLLMKLFVMKLTRPQMNEILVH 59
            +V+DE+Y++  HV PWA GTSR+PSTAFCLL K F M+LT+ Q+  +L H
Sbjct:   69 EVIDEVYNKVTHVEPWATGTSRLPSTAFCLLFKFFTMRLTKKQVTGLLTH 118          
BLAST of mRNA_H-elongata_contig199970.5627.1 vs. uniprot
Match: F2EBP1_HORVV (Pre-mRNA-splicing factor 38 n=3 Tax=Triticeae TaxID=147389 RepID=F2EBP1_HORVV)

HSP 1 Score: 68.6 bits (166), Expect = 6.160e-13
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = 0
Query:   10 QVVDEIYSRCDHVAPWAPGTSRVPSTAFCLLMKLFVMKLTRPQMNEILVH 59
            +V+DEIY++ DHV PW  G  R PSTAFCLL KLF MKLT  QM+ +L H
Sbjct:   39 EVIDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKLFTMKLTVNQMHGLLKH 88          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig199970.5627.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPC2_ECTSI2.230e-2488.68Tudor domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KEK1_9PHAE1.950e-2390.20Tudor domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A3R7B771_9STRA4.430e-1462.26Pre-mRNA-splicing factor 38 n=1 Tax=Aphanomyces as... [more]
UPI0009AA85451.790e-1360.78pre-mRNA splicing factor SR-like 1 n=1 Tax=Zea may... [more]
W7TLT3_9STRA1.930e-1358.00Pre-mRNA-splicing factor 38 n=1 Tax=Nannochloropsi... [more]
A0A3L6D7C0_MAIZE1.980e-1358.82Pre-mRNA-splicing factor 38 n=1 Tax=Zea mays TaxID... [more]
UPI001D1A52542.350e-1362.00pre-mRNA splicing factor SR-like 1 isoform X2 n=5 ... [more]
A1YKG0_BRASY3.290e-1362.00Pre-mRNA-splicing factor 38 n=1 Tax=Brachypodium s... [more]
A0A4D9DAU1_9STRA3.760e-1358.00Pre-mRNA-splicing factor 38 n=1 Tax=Nannochloropsi... [more]
F2EBP1_HORVV6.160e-1362.00Pre-mRNA-splicing factor 38 n=3 Tax=Triticeae TaxI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005037Pre-mRNA-splicing factor 38PFAMPF03371PRP38coord: 8..59
e-value: 9.5E-14
score: 51.6
IPR005037Pre-mRNA-splicing factor 38PANTHERPTHR23142UNCHARACTERIZEDcoord: 8..60
NoneNo IPR availablePANTHERPTHR23142:SF2PRE-MRNA-SPLICING FACTOR 38Bcoord: 8..60

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig199970contigH-elongata_contig199970:286..486 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig199970.5627.1mRNA_H-elongata_contig199970.5627.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig199970 286..486 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig199970.5627.1 ID=prot_H-elongata_contig199970.5627.1|Name=mRNA_H-elongata_contig199970.5627.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
MPWVNEKQQQVVDEIYSRCDHVAPWAPGTSRVPSTAFCLLMKLFVMKLTR
PQMNEILVHEVGLRIE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005037PRP38