prot_H-elongata_contig19986.5624.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig19986.5624.1
Unique Nameprot_H-elongata_contig19986.5624.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length398
Homology
BLAST of mRNA_H-elongata_contig19986.5624.1 vs. uniprot
Match: D7G1Q6_ECTSI (EF hand family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Q6_ECTSI)

HSP 1 Score: 367 bits (943), Expect = 1.040e-120
Identity = 216/406 (53.20%), Postives = 265/406 (65.27%), Query Frame = 0
Query:    2 LKSTMFAKYNKFNDAKVRIGSWREELALKELTGFTRLANPKNKAVYNSTGARRGMTGMVLFHADSIEAKDSG--KSTSGVSFVNPATVPDAKNSSMQIKPGPRAVQKKQEMANIAIIEAKDAAR-ASQEATLNERSFDTTFRRARRLSHALSFKQYSDEAAREAKSKSFNPRGESFPQARQAPAA-------RNPDDVPVSKAELGLYSTGTTIMLWNSPDFAQNAAATLGAFGRTASFTEPGVHPSFSEEAFPIRAPRSPSLPRGLSDSEASSLAFLKRRVVERACESALPSIRGLWQLLWPRTNRNAVGKISQREFREGMAEFKVPITPFEQWAVATAFDTDGSGQISLDRFVQFFRNGRFSATRREKLSEVFSRLDPYNTGSVALDSLREACAFWRYPTVKEG 397
            L+S MFA YNKF+DAKVRIGSWREELA+KELTG TRLANP+N+AV+N+T  R      VL+HAD   AKD+G  KS S  S+++P  V   K  S  I+PGPRAV+ +Q  A   I++A++A R A +     +  FDTTFR+        S+K+YSDEA+R AK  S  P+ E+ PQA  AP         R   DV     E+G YSTGTT+ LWN+   A    A   +FGRT+ FTEPGVHPSF +E +    P   SLPRGLSD EA SL FLK RV+ERA E  LPS+RGLW+LLWPRT  +AVGK+   EFREGMAEF+VP+T  E WAV TAFDTD  GQI LD+ + FFR G  S  RR+ + ++F  LD  NTG+V L S+R AC F   P V EG
Sbjct:    4 LRSAMFAGYNKFDDAKVRIGSWREELAMKELTGVTRLANPRNRAVFNATDVR------VLYHADKPGAKDAGRGKSESHTSYIHPEKVAATKERSAYIRPGPRAVRSRQ--AAKEIVQAEEAEREALEREKKKDGDFDTTFRQ--------SYKRYSDEASRAAKQDSVKPQPENAPQA-PAPTTKAFKNSMRRSGDVMSEIGEVGHYSTGTTVTLWNTGGMAPGGTADRASFGRTSRFTEPGVHPSFFQEVWRDPGPHHASLPRGLSDLEARSLMFLKNRVIERAQEKPLPSVRGLWRLLWPRTYVDAVGKVGPAEFREGMAEFEVPVTKCEVWAVTTAFDTDNRGQICLDKLMHFFRAGGLSEARRKVVHKLFRGLDSANTGAVPLSSIRAACDFSSSPAVIEG 392          
BLAST of mRNA_H-elongata_contig19986.5624.1 vs. uniprot
Match: A0A6H5L3H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H9_9PHAE)

HSP 1 Score: 323 bits (827), Expect = 1.340e-103
Identity = 210/470 (44.68%), Postives = 261/470 (55.53%), Query Frame = 0
Query:    2 LKSTMFAKYNKFNDAKVRIGSWREELALKELTGFTRLANPKNKAVYNSTGARRGMTGMVLFHADSIEAKDSGKSTSG--VSFVNPATVPDAKNSSMQIKPGPRAVQKKQEMANIAIIEAKDAAR-ASQEATLNERSFDTTFRRARRLSHALSFKQYSDEAAREAKSKSFNPRGESFPQARQA---------PAARNPDDVPVSK-------------------------------------AELGLYSTGTTIMLWNSPDFAQNAAATLGAFGRTASFTEPGVHPSFSEEAFPIRAPRSPSLPRGLSDSEASSLAFLKRRVVERACESALPSIRGLWQLLWPRTNRNAVGKISQREFREGMAEFKVPITPFEQWAVATAFDTDGSGQ-------------------------ISLDRFVQFFRNGRFSATRREKLSEVFSRLDPYNTGSVALDSLREACAFWRYPTVKEG 397
            L+S MFA YNKF+DAKVRIGSWREELA+KELTG TRLANP+NKAV+N+T  R      VL+HAD   AKD+G+ TS    S+++P  V   K  S  I+PGPRAV+ +  +A   I+ A++A R A +     +  FDTTFR+        S+K+YSDEA+R AK  S  P+ E+ PQ             P  + P D+ V+K                                      E G YSTGTT+ LWN+   A+   A   + GRT+ FTEPGVHPSFS+E +P   P   SLPRGLSD EA SL FLK+RV+ERA E  LPS+RGLW    PRT  +AVGKI   EFREGMAEF+VP+T  E W V TAFDT+  GQ                         I LD+ + FFR G  S  RR+ + E+F  LD  NTG+V L S+R  C F   P V  G
Sbjct:    4 LRSAMFAGYNKFDDAKVRIGSWREELAMKELTGVTRLANPRNKAVFNATDVR------VLYHADKPGAKDAGRGTSESHTSYIHPEKVAATKERSAYIRPGPRAVRSR--LAAKEIVLAEEAEREALEREKKKDGDFDTTFRQ--------SYKRYSDEASRAAKQDSVKPQPENAPQGNHPTDIFKPTWQPIPKLPADLFVTKYLCSGHAARAVPTKAPAPSTKVLKNGMTRGGDAMSEIGEGGHYSTGTTVTLWNTGGMARGGKADRASLGRTSRFTEPGVHPSFSQEVWPDAGPHHASLPRGLSDLEARSLMFLKKRVIERAQEKPLPSMRGLW----PRTYADAVGKIGPAEFREGMAEFEVPVTKCEVWVVTTAFDTNNRGQEDAQRHGLHRSFKTKATNDFPVILQICLDKLIHFFRAGGLSEARRKVVHELFRGLDSANTGAVPLSSIRAVCDFSSSPAVIRG 453          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19986.5624.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1Q6_ECTSI1.040e-12053.20EF hand family protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5L3H9_9PHAE1.340e-10344.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.238.10coord: 270..393
e-value: 8.4E-14
score: 53.4
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 293..389

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19986contigH-elongata_contig19986:724..4724 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19986.5624.1mRNA_H-elongata_contig19986.5624.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig19986 724..4724 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig19986.5624.1 ID=prot_H-elongata_contig19986.5624.1|Name=mRNA_H-elongata_contig19986.5624.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=398bp
MLKSTMFAKYNKFNDAKVRIGSWREELALKELTGFTRLANPKNKAVYNST
GARRGMTGMVLFHADSIEAKDSGKSTSGVSFVNPATVPDAKNSSMQIKPG
PRAVQKKQEMANIAIIEAKDAARASQEATLNERSFDTTFRRARRLSHALS
FKQYSDEAAREAKSKSFNPRGESFPQARQAPAARNPDDVPVSKAELGLYS
TGTTIMLWNSPDFAQNAAATLGAFGRTASFTEPGVHPSFSEEAFPIRAPR
SPSLPRGLSDSEASSLAFLKRRVVERACESALPSIRGLWQLLWPRTNRNA
VGKISQREFREGMAEFKVPITPFEQWAVATAFDTDGSGQISLDRFVQFFR
NGRFSATRREKLSEVFSRLDPYNTGSVALDSLREACAFWRYPTVKEG*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011992EF-hand-dom_pair