mRNA_H-elongata_contig19986.5624.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig19986.5624.1 vs. uniprot
Match: D7G1Q6_ECTSI (EF hand family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Q6_ECTSI) HSP 1 Score: 367 bits (943), Expect = 1.040e-120 Identity = 216/406 (53.20%), Postives = 265/406 (65.27%), Query Frame = 1
Query: 4 LKSTMFAKYNKFNDAKVRIGSWREELALKELTGFTRLANPKNKAVYNSTGARRGMTGMVLFHADSIEAKDSG--KSTSGVSFVNPATVPDAKNSSMQIKPGPRAVQKKQEMANIAIIEAKDAAR-ASQEATLNERSFDTTFRRARRLSHALSFKQYSDEAAREAKSKSFNPRGESFPQARQAPAA-------RNPDDVPVSKAELGLYSTGTTIMLWNSPDFAQNAAATLGAFGRTASFTEPGVHPSFSEEAFPIRAPRSPSLPRGLSDSEASSLAFLKRRVVERACESALPSIRGLWQLLWPRTNRNAVGKISQREFREGMAEFKVPITPFEQWAVATAFDTDGSGQISLDRFVQFFRNGRFSATRREKLSEVFSRLDPYNTGSVALDSLREACAFWRYPTVKEG 1191
L+S MFA YNKF+DAKVRIGSWREELA+KELTG TRLANP+N+AV+N+T R VL+HAD AKD+G KS S S+++P V K S I+PGPRAV+ +Q A I++A++A R A + + FDTTFR+ S+K+YSDEA+R AK S P+ E+ PQA AP R DV E+G YSTGTT+ LWN+ A A +FGRT+ FTEPGVHPSF +E + P SLPRGLSD EA SL FLK RV+ERA E LPS+RGLW+LLWPRT +AVGK+ EFREGMAEF+VP+T E WAV TAFDTD GQI LD+ + FFR G S RR+ + ++F LD NTG+V L S+R AC F P V EG
Sbjct: 4 LRSAMFAGYNKFDDAKVRIGSWREELAMKELTGVTRLANPRNRAVFNATDVR------VLYHADKPGAKDAGRGKSESHTSYIHPEKVAATKERSAYIRPGPRAVRSRQ--AAKEIVQAEEAEREALEREKKKDGDFDTTFRQ--------SYKRYSDEASRAAKQDSVKPQPENAPQA-PAPTTKAFKNSMRRSGDVMSEIGEVGHYSTGTTVTLWNTGGMAPGGTADRASFGRTSRFTEPGVHPSFFQEVWRDPGPHHASLPRGLSDLEARSLMFLKNRVIERAQEKPLPSVRGLWRLLWPRTYVDAVGKVGPAEFREGMAEFEVPVTKCEVWAVTTAFDTDNRGQICLDKLMHFFRAGGLSEARRKVVHKLFRGLDSANTGAVPLSSIRAACDFSSSPAVIEG 392
BLAST of mRNA_H-elongata_contig19986.5624.1 vs. uniprot
Match: A0A6H5L3H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H9_9PHAE) HSP 1 Score: 323 bits (827), Expect = 1.340e-103 Identity = 210/470 (44.68%), Postives = 261/470 (55.53%), Query Frame = 1
Query: 4 LKSTMFAKYNKFNDAKVRIGSWREELALKELTGFTRLANPKNKAVYNSTGARRGMTGMVLFHADSIEAKDSGKSTSG--VSFVNPATVPDAKNSSMQIKPGPRAVQKKQEMANIAIIEAKDAAR-ASQEATLNERSFDTTFRRARRLSHALSFKQYSDEAAREAKSKSFNPRGESFPQARQA---------PAARNPDDVPVSK-------------------------------------AELGLYSTGTTIMLWNSPDFAQNAAATLGAFGRTASFTEPGVHPSFSEEAFPIRAPRSPSLPRGLSDSEASSLAFLKRRVVERACESALPSIRGLWQLLWPRTNRNAVGKISQREFREGMAEFKVPITPFEQWAVATAFDTDGSGQ-------------------------ISLDRFVQFFRNGRFSATRREKLSEVFSRLDPYNTGSVALDSLREACAFWRYPTVKEG 1191
L+S MFA YNKF+DAKVRIGSWREELA+KELTG TRLANP+NKAV+N+T R VL+HAD AKD+G+ TS S+++P V K S I+PGPRAV+ + +A I+ A++A R A + + FDTTFR+ S+K+YSDEA+R AK S P+ E+ PQ P + P D+ V+K E G YSTGTT+ LWN+ A+ A + GRT+ FTEPGVHPSFS+E +P P SLPRGLSD EA SL FLK+RV+ERA E LPS+RGLW PRT +AVGKI EFREGMAEF+VP+T E W V TAFDT+ GQ I LD+ + FFR G S RR+ + E+F LD NTG+V L S+R C F P V G
Sbjct: 4 LRSAMFAGYNKFDDAKVRIGSWREELAMKELTGVTRLANPRNKAVFNATDVR------VLYHADKPGAKDAGRGTSESHTSYIHPEKVAATKERSAYIRPGPRAVRSR--LAAKEIVLAEEAEREALEREKKKDGDFDTTFRQ--------SYKRYSDEASRAAKQDSVKPQPENAPQGNHPTDIFKPTWQPIPKLPADLFVTKYLCSGHAARAVPTKAPAPSTKVLKNGMTRGGDAMSEIGEGGHYSTGTTVTLWNTGGMARGGKADRASLGRTSRFTEPGVHPSFSQEVWPDAGPHHASLPRGLSDLEARSLMFLKKRVIERAQEKPLPSMRGLW----PRTYADAVGKIGPAEFREGMAEFEVPVTKCEVWVVTTAFDTNNRGQEDAQRHGLHRSFKTKATNDFPVILQICLDKLIHFFRAGGLSEARRKVVHELFRGLDSANTGAVPLSSIRAVCDFSSSPAVIRG 453 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19986.5624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig19986.5624.1 >prot_H-elongata_contig19986.5624.1 ID=prot_H-elongata_contig19986.5624.1|Name=mRNA_H-elongata_contig19986.5624.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=398bp MLKSTMFAKYNKFNDAKVRIGSWREELALKELTGFTRLANPKNKAVYNSTback to top mRNA from alignment at H-elongata_contig19986:724..4724- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig19986.5624.1 ID=mRNA_H-elongata_contig19986.5624.1|Name=mRNA_H-elongata_contig19986.5624.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4001bp|location=Sequence derived from alignment at H-elongata_contig19986:724..4724- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig19986:724..4724- >mRNA_H-elongata_contig19986.5624.1 ID=mRNA_H-elongata_contig19986.5624.1|Name=mRNA_H-elongata_contig19986.5624.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2388bp|location=Sequence derived from alignment at H-elongata_contig19986:724..4724- (Himanthalia elongata Himel1 dioecious)back to top |