prot_H-elongata_contig19980.5621.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig19980.5621.1
Unique Nameprot_H-elongata_contig19980.5621.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length63
Homology
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BLAST of mRNA_H-elongata_contig19980.5621.1 vs. uniprot
Match: A0A6H5J6R4_9PHAE (NAC-A/B domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6R4_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 3.530e-11
Identity = 36/51 (70.59%), Postives = 40/51 (78.43%), Query Frame = 0 
Query:   12 AVEVRSASDGIDPADVLTVVSHTGCDSDAAIKALRQEEGDVVNAVMRLTEA 62
            AVE  S S G+DPADVLT+VS  GCDS AAI ALRQ +GDV+NAVM LT A
Sbjct:  788 AVESDSISAGLDPADVLTLVSQVGCDSKAAIVALRQADGDVINAVMDLTFA 838
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BLAST of mRNA_H-elongata_contig19980.5621.1 vs. uniprot
Match: D7FI48_ECTSI (Nascent polypeptide associated complex alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI48_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 6.580e-11
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 0 
Query:   12 AVEVRSASDGIDPADVLTVVSHTGCDSDAAIKALRQEEGDVVNAVMRLTEA 62
            AVE  S S G+DPADVLT+VS  GCDS AAI ALRQ +GDV+NAV+ LT A
Sbjct:  698 AVESDSISAGLDPADVLTLVSQVGCDSQAAIVALRQADGDVINAVLDLTFA 748
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19980.5621.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J6R4_9PHAE3.530e-1170.59NAC-A/B domain-containing protein n=1 Tax=Ectocarp... [more]
D7FI48_ECTSI6.580e-1168.63Nascent polypeptide associated complex alpha n=1 T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.8.10coord: 21..60
e-value: 4.1E-9
score: 37.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19980contigH-elongata_contig19980:2325..2513 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19980.5621.1mRNA_H-elongata_contig19980.5621.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig19980 2325..2537 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig19980.5621.1 ID=prot_H-elongata_contig19980.5621.1|Name=mRNA_H-elongata_contig19980.5621.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
MPKVPSSANREAVEVRSASDGIDPADVLTVVSHTGCDSDAAIKALRQEEG
DVVNAVMRLTEA*
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