mRNA_H-elongata_contig19980.5621.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19980.5621.1
Unique NamemRNA_H-elongata_contig19980.5621.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig19980.5621.1 vs. uniprot
Match: A0A6H5J6R4_9PHAE (NAC-A/B domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6R4_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 4.930e-11
Identity = 36/51 (70.59%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:   58 AVEVRSASDGIDPADVLTVVSHTGCDSDAAIKALRQEEGDVVNAVMRLTEA 210
            AVE  S S G+DPADVLT+VS  GCDS AAI ALRQ +GDV+NAVM LT A
Sbjct:  788 AVESDSISAGLDPADVLTLVSQVGCDSKAAIVALRQADGDVINAVMDLTFA 838
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BLAST of mRNA_H-elongata_contig19980.5621.1 vs. uniprot
Match: D7FI48_ECTSI (Nascent polypeptide associated complex alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI48_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 9.180e-11
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:   58 AVEVRSASDGIDPADVLTVVSHTGCDSDAAIKALRQEEGDVVNAVMRLTEA 210
            AVE  S S G+DPADVLT+VS  GCDS AAI ALRQ +GDV+NAV+ LT A
Sbjct:  698 AVESDSISAGLDPADVLTLVSQVGCDSQAAIVALRQADGDVINAVLDLTFA 748
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19980.5621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J6R4_9PHAE4.930e-1170.59NAC-A/B domain-containing protein n=1 Tax=Ectocarp... [more]
D7FI48_ECTSI9.180e-1168.63Nascent polypeptide associated complex alpha n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19980contigH-elongata_contig19980:2325..2537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue3.6e-09
Seed eggNOG ortholog2880.D7FI48
Preferred nameNACAD
KEGG rclassRC00672
KEGG koko:K03626,ko:K10659,ko:K15730
KEGG ReactionR02265
KEGG Pathwayko00590,ko01100,map00590,map01100
EggNOG free text desc.protein transport
EggNOG OGsCOG1308@1,KOG2239@2759
EC2.3.2.27,5.3.99.3
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size189
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930126.2138271-CDS-H-elongata_contig19980:2324..25131622930126.2138271-CDS-H-elongata_contig19980:2324..2513Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19980 2325..2513 -
1691679290.9905963-CDS-H-elongata_contig19980:2324..25131691679290.9905963-CDS-H-elongata_contig19980:2324..2513Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19980 2325..2513 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930126.2271547-UTR-H-elongata_contig19980:2513..25371622930126.2271547-UTR-H-elongata_contig19980:2513..2537Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19980 2514..2537 -
1691679291.0032089-UTR-H-elongata_contig19980:2513..25371691679291.0032089-UTR-H-elongata_contig19980:2513..2537Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19980 2514..2537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19980.5621.1prot_H-elongata_contig19980.5621.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19980 2325..2513 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19980.5621.1

>prot_H-elongata_contig19980.5621.1 ID=prot_H-elongata_contig19980.5621.1|Name=mRNA_H-elongata_contig19980.5621.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
MPKVPSSANREAVEVRSASDGIDPADVLTVVSHTGCDSDAAIKALRQEEG
DVVNAVMRLTEA*
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mRNA from alignment at H-elongata_contig19980:2325..2537-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19980.5621.1 ID=mRNA_H-elongata_contig19980.5621.1|Name=mRNA_H-elongata_contig19980.5621.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig19980:2325..2537- (Himanthalia elongata Himel1 dioecious)
CCGAACGCGGACGATCCTGCTCAGATGCCCAAGGTACCGTCGAGCGCAAA
CCGGGAGGCCGTCGAAGTCAGGTCCGCCTCGGATGGGATTGATCCAGCAG
ACGTGCTGACCGTGGTGTCTCACACGGGGTGTGACTCAGACGCGGCGATC
AAGGCCTTGCGCCAGGAGGAGGGCGACGTGGTGAATGCCGTTATGCGCCT
TACGGAGGCGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig19980:2325..2537-

>mRNA_H-elongata_contig19980.5621.1 ID=mRNA_H-elongata_contig19980.5621.1|Name=mRNA_H-elongata_contig19980.5621.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig19980:2325..2537- (Himanthalia elongata Himel1 dioecious)
ATGCCCAAGGTACCGTCGAGCGCAAACCGGGAGGCCGTCGAAGTCAGGTC
CGCCTCGGATGGGATTGATCCAGCAGACGTGCTGACCGTGGTGTCTCACA
CGGGGTGTGACTCAGACGCGGCGATCAAGGCCTTGCGCCAGGAGGAGGGC
GACGTGGTGAATGCCGTTATGCGCCTTACGGAGGCGTAAATGCCCAAGGT
ACCGTCGAGCGCAAACCGGGAGGCCGTCGAAGTCAGGTCCGCCTCGGATG
GGATTGATCCAGCAGACGTGCTGACCGTGGTGTCTCACACGGGGTGTGAC
TCAGACGCGGCGATCAAGGCCTTGCGCCAGGAGGAGGGCGACGTGGTGAA
TGCCGTTATGCGCCTTACGGAGGCGTAA
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