prot_H-elongata_contig199429.5608.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig199429.5608.1
Unique Name	prot_H-elongata_contig199429.5608.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	100

Homology

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BLAST of mRNA_H-elongata_contig199429.5608.1 vs. uniprot
Match: D8LDK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDK1_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.370e-19
Identity = 55/99 (55.56%), Postives = 67/99 (67.68%), Query Frame = 0

Query:    1 MAFSIVRRLLLAPVTHLSPANGDRPHLPANFVKFAKAAHEQARVIARKNRAMLGQELARAVD---ASSFATQKSGRLTMAAAERQLRSGVGAFDLAGEQ 96
            +AF  V R LL+PVTHLSPANG RPH PA F KFAK A E+A+ I R N   L QELAR  D   A++  + ++GRLT+AA E +LR G+    LAGEQ
Sbjct: 1024 VAFRTVHRTLLSPVTHLSPANGGRPHDPAVFTKFAKPAVEKAKAIDRNNWNTLAQELARGSDDAAAAAHDSNQTGRLTVAATEERLRRGLQPAHLAGEQ 1122

[Close]

BLAST of mRNA_H-elongata_contig199429.5608.1 vs. uniprot
Match: A0A6H5KXS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS5_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 3.520e-19
Identity = 55/99 (55.56%), Postives = 67/99 (67.68%), Query Frame = 0

Query:    1 MAFSIVRRLLLAPVTHLSPANGDRPHLPANFVKFAKAAHEQARVIARKNRAMLGQELARAVDASSFAT---QKSGRLTMAAAERQLRSGVGAFDLAGEQ 96
            +AF  V R LL+PVTHLSPANG RPH PA F KFAK A E+A+ I R N   L QELAR  D ++ A    +++GRLT+AA E +LR G+    LAGEQ
Sbjct: 1227 VAFRTVHRTLLSPVTHLSPANGGRPHDPAVFTKFAKPAVEKAKAIDRNNWNTLAQELARGSDDAAAAAHDGKQTGRLTVAATEERLRRGLQPAYLAGEQ 1325

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig199429.5608.1 vs. uniprot

BLAST of mRNA_H-elongata_contig199429.5608.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LDK1_ECTSI	1.370e-19	55.56	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KXS5_9PHAE	3.520e-19	55.56	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 9..17
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..22
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 23..100
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 18..22
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..8

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig199429	contig	H-elongata_contig199429:378..855 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig199429.5608.1	mRNA_H-elongata_contig199429.5608.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig199429 363..855 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig199429.5608.1 ID=prot_H-elongata_contig199429.5608.1|Name=mRNA_H-elongata_contig199429.5608.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
MAFSIVRRLLLAPVTHLSPANGDRPHLPANFVKFAKAAHEQARVIARKNR
AMLGQELARAVDASSFATQKSGRLTMAAAERQLRSGVGAFDLAGEQASRI