prot_H-elongata_contig198743.5573.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig198743.5573.1
Unique Nameprot_H-elongata_contig198743.5573.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length49
Homology
BLAST of mRNA_H-elongata_contig198743.5573.1 vs. uniprot
Match: D8LKH1_ECTSI (Uracil-DNA glycosylase superfamily protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKH1_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 3.700e-23
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 0
Query:    1 SKVSGKRLWGFFKRRFGTADAWGDKMFAYSYCPLTFMSSSGGNITPDK 48
            S+VSG RLWGFF+RRFGTADAWGDKMF Y++CPLTFMSSSGGNITPDK
Sbjct:  171 SEVSGTRLWGFFERRFGTADAWGDKMFVYNFCPLTFMSSSGGNITPDK 218          
BLAST of mRNA_H-elongata_contig198743.5573.1 vs. uniprot
Match: A0A7W1F2J4_9BACT (Single-stranded DNA-binding protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7W1F2J4_9BACT)

HSP 1 Score: 70.9 bits (172), Expect = 1.480e-13
Identity = 29/48 (60.42%), Postives = 39/48 (81.25%), Query Frame = 0
Query:    1 SKVSGKRLWGFFKRRFGTADAWGDKMFAYSYCPLTFMSSSGGNITPDK 48
            S+VSG+RLWG F+ RF +A+A+  + F  +YCPL FMS+SGGN+TPDK
Sbjct:  110 SEVSGRRLWGLFRERFASAEAFATEHFVANYCPLVFMSASGGNVTPDK 157          
BLAST of mRNA_H-elongata_contig198743.5573.1 vs. uniprot
Match: A0A4Q2X1G7_9BACT (Single-stranded DNA-binding protein (Fragment) n=2 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A4Q2X1G7_9BACT)

HSP 1 Score: 69.3 bits (168), Expect = 3.760e-13
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 0
Query:    1 SKVSGKRLWGFFKRRFGTADAWGDKMFAYSYCPLTFMSSSGGNITPDK 48
            S+VSG+RLWG F  RFGTADA+    F  +YCPL +MSS+G N+TPDK
Sbjct:   77 SEVSGRRLWGLFSERFGTADAFFKDHFVLNYCPLVWMSSTGANLTPDK 124          
BLAST of mRNA_H-elongata_contig198743.5573.1 vs. uniprot
Match: A0A832H887_9BACT (Single-strand selective monofunctional uracil-DNA glycosylase n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A832H887_9BACT)

HSP 1 Score: 69.3 bits (168), Expect = 5.570e-13
Identity = 30/48 (62.50%), Postives = 39/48 (81.25%), Query Frame = 0
Query:    1 SKVSGKRLWGFFKRRFGTADAWGDKMFAYSYCPLTFMSSSGGNITPDK 48
            S+VSG+RLWG F +RFGTA+A+    FA +YCPL FM++SG N+TPDK
Sbjct:  108 SEVSGRRLWGLFAQRFGTAEAFFRDHFAANYCPLVFMAASGANLTPDK 155          
BLAST of mRNA_H-elongata_contig198743.5573.1 vs. uniprot
Match: A0A4V1SDI5_9BACT (Single-strand selective monofunctional uracil-DNA glycosylase n=2 Tax=Verrucomicrobiaceae TaxID=203557 RepID=A0A4V1SDI5_9BACT)

HSP 1 Score: 69.3 bits (168), Expect = 5.570e-13
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 0
Query:    1 SKVSGKRLWGFFKRRFGTADAWGDKMFAYSYCPLTFMSSSGGNITPDK 48
            S+VSG+RLWG F  RFGTADA+    F  +YCPL +MSS+G N+TPDK
Sbjct:  107 SEVSGRRLWGLFSERFGTADAFFKDHFVLNYCPLVWMSSTGANLTPDK 154          
BLAST of mRNA_H-elongata_contig198743.5573.1 vs. uniprot
Match: UPI0019034DE8 (single-stranded DNA-binding protein n=1 Tax=Luteolibacter pohnpeiensis TaxID=454153 RepID=UPI0019034DE8)

HSP 1 Score: 68.6 bits (166), Expect = 1.130e-12
Identity = 29/48 (60.42%), Postives = 39/48 (81.25%), Query Frame = 0
Query:    1 SKVSGKRLWGFFKRRFGTADAWGDKMFAYSYCPLTFMSSSGGNITPDK 48
            S+VSG+RLWG F+ RFGTADA+ +  F  +YCPL +MS++G N+TPDK
Sbjct:  110 SEVSGRRLWGLFQDRFGTADAFFEDHFVTNYCPLVWMSATGANLTPDK 157          
BLAST of mRNA_H-elongata_contig198743.5573.1 vs. uniprot
Match: A0A3N5VL41_9BACT (Single-strand selective monofunctional uracil-DNA glycosylase n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A3N5VL41_9BACT)

HSP 1 Score: 67.8 bits (164), Expect = 2.180e-12
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 0
Query:    1 SKVSGKRLWGFFKRRFGTADAWGDKMFAYSYCPLTFMSSSGGNITPDK 48
            S+VSG+RLWG F  RFGTADA+    F  +YCPL +MS++G N+TPDK
Sbjct:  110 SEVSGRRLWGLFAERFGTADAFFKDHFVLNYCPLVWMSATGANLTPDK 157          
BLAST of mRNA_H-elongata_contig198743.5573.1 vs. uniprot
Match: A0A7C5PES2_9BACT (Single-stranded DNA-binding protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C5PES2_9BACT)

HSP 1 Score: 67.0 bits (162), Expect = 4.290e-12
Identity = 28/48 (58.33%), Postives = 37/48 (77.08%), Query Frame = 0
Query:    1 SKVSGKRLWGFFKRRFGTADAWGDKMFAYSYCPLTFMSSSGGNITPDK 48
            S+VSG+RLWG+ + RFGT  A+ ++ F Y+YCPL+FM  SG N TPDK
Sbjct:  106 SEVSGRRLWGWARERFGTPMAFFERFFVYNYCPLSFMEESGRNFTPDK 153          
BLAST of mRNA_H-elongata_contig198743.5573.1 vs. uniprot
Match: UPI001B8AC5B4 (single-stranded DNA-binding protein n=1 Tax=Luteolibacter ambystomatis TaxID=2824561 RepID=UPI001B8AC5B4)

HSP 1 Score: 67.0 bits (162), Expect = 4.290e-12
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 0
Query:    1 SKVSGKRLWGFFKRRFGTADAWGDKMFAYSYCPLTFMSSSGGNITPDK 48
            S+VSG+RLWG F  RFGTA+A+    F  +YCPL +MSS+G N+TPDK
Sbjct:  109 SEVSGRRLWGLFAERFGTAEAFFKDHFVANYCPLVWMSSTGANLTPDK 156          
BLAST of mRNA_H-elongata_contig198743.5573.1 vs. uniprot
Match: Q39ZI0_GEOMG (Uncharacterized protein n=2 Tax=Geobacter TaxID=28231 RepID=Q39ZI0_GEOMG)

HSP 1 Score: 66.6 bits (161), Expect = 5.650e-12
Identity = 27/48 (56.25%), Postives = 37/48 (77.08%), Query Frame = 0
Query:    1 SKVSGKRLWGFFKRRFGTADAWGDKMFAYSYCPLTFMSSSGGNITPDK 48
            S+VSG+RLWGF + RFGT + +  + F  +YCPL F+++ GGNITPDK
Sbjct:  107 SEVSGRRLWGFIRERFGTPERFFARFFVANYCPLLFLTAEGGNITPDK 154          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig198743.5573.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKH1_ECTSI3.700e-2387.50Uracil-DNA glycosylase superfamily protein n=2 Tax... [more]
A0A7W1F2J4_9BACT1.480e-1360.42Single-stranded DNA-binding protein n=1 Tax=Planct... [more]
A0A4Q2X1G7_9BACT3.760e-1362.50Single-stranded DNA-binding protein (Fragment) n=2... [more]
A0A832H887_9BACT5.570e-1362.50Single-strand selective monofunctional uracil-DNA ... [more]
A0A4V1SDI5_9BACT5.570e-1362.50Single-strand selective monofunctional uracil-DNA ... [more]
UPI0019034DE81.130e-1260.42single-stranded DNA-binding protein n=1 Tax=Luteol... [more]
A0A3N5VL41_9BACT2.180e-1260.42Single-strand selective monofunctional uracil-DNA ... [more]
A0A7C5PES2_9BACT4.290e-1258.33Single-stranded DNA-binding protein n=1 Tax=Planct... [more]
UPI001B8AC5B44.290e-1260.42single-stranded DNA-binding protein n=1 Tax=Luteol... [more]
Q39ZI0_GEOMG5.650e-1256.25Uncharacterized protein n=2 Tax=Geobacter TaxID=28... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036895Uracil-DNA glycosylase-like domain superfamilyGENE3D3.40.470.10coord: 1..48
e-value: 1.3E-14
score: 55.7
IPR036895Uracil-DNA glycosylase-like domain superfamilySUPERFAMILY52141Uracil-DNA glycosylase-likecoord: 3..48

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig198743contigH-elongata_contig198743:207..689 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig198743.5573.1mRNA_H-elongata_contig198743.5573.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig198743 207..689 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig198743.5573.1 ID=prot_H-elongata_contig198743.5573.1|Name=mRNA_H-elongata_contig198743.5573.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
SKVSGKRLWGFFKRRFGTADAWGDKMFAYSYCPLTFMSSSGGNITPDK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036895Uracil-DNA_glycosylase-like_sf