mRNA_H-elongata_contig198743.5573.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig198743.5573.1
Unique NamemRNA_H-elongata_contig198743.5573.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig198743.5573.1 vs. uniprot
Match: D8LKH1_ECTSI (Uracil-DNA glycosylase superfamily protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKH1_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 3.700e-23
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:    1 SKVSGKRLWGFFKRRFGTADAWGDKMFAYSYCPLTFMSSSGGNITPDK 144
            S+VSG RLWGFF+RRFGTADAWGDKMF Y++CPLTFMSSSGGNITPDK
Sbjct:  171 SEVSGTRLWGFFERRFGTADAWGDKMFVYNFCPLTFMSSSGGNITPDK 218
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BLAST of mRNA_H-elongata_contig198743.5573.1 vs. uniprot
Match: A0A7W1F2J4_9BACT (Single-stranded DNA-binding protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7W1F2J4_9BACT)

HSP 1 Score: 70.9 bits (172), Expect = 1.480e-13
Identity = 29/48 (60.42%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 SKVSGKRLWGFFKRRFGTADAWGDKMFAYSYCPLTFMSSSGGNITPDK 144
            S+VSG+RLWG F+ RF +A+A+  + F  +YCPL FMS+SGGN+TPDK
Sbjct:  110 SEVSGRRLWGLFRERFASAEAFATEHFVANYCPLVFMSASGGNVTPDK 157
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BLAST of mRNA_H-elongata_contig198743.5573.1 vs. uniprot
Match: A0A4Q2X1G7_9BACT (Single-stranded DNA-binding protein (Fragment) n=2 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A4Q2X1G7_9BACT)

HSP 1 Score: 69.3 bits (168), Expect = 3.760e-13
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 SKVSGKRLWGFFKRRFGTADAWGDKMFAYSYCPLTFMSSSGGNITPDK 144
            S+VSG+RLWG F  RFGTADA+    F  +YCPL +MSS+G N+TPDK
Sbjct:   77 SEVSGRRLWGLFSERFGTADAFFKDHFVLNYCPLVWMSSTGANLTPDK 124
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BLAST of mRNA_H-elongata_contig198743.5573.1 vs. uniprot
Match: A0A832H887_9BACT (Single-strand selective monofunctional uracil-DNA glycosylase n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A832H887_9BACT)

HSP 1 Score: 69.3 bits (168), Expect = 5.570e-13
Identity = 30/48 (62.50%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 SKVSGKRLWGFFKRRFGTADAWGDKMFAYSYCPLTFMSSSGGNITPDK 144
            S+VSG+RLWG F +RFGTA+A+    FA +YCPL FM++SG N+TPDK
Sbjct:  108 SEVSGRRLWGLFAQRFGTAEAFFRDHFAANYCPLVFMAASGANLTPDK 155
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BLAST of mRNA_H-elongata_contig198743.5573.1 vs. uniprot
Match: A0A4V1SDI5_9BACT (Single-strand selective monofunctional uracil-DNA glycosylase n=2 Tax=Verrucomicrobiaceae TaxID=203557 RepID=A0A4V1SDI5_9BACT)

HSP 1 Score: 69.3 bits (168), Expect = 5.570e-13
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 SKVSGKRLWGFFKRRFGTADAWGDKMFAYSYCPLTFMSSSGGNITPDK 144
            S+VSG+RLWG F  RFGTADA+    F  +YCPL +MSS+G N+TPDK
Sbjct:  107 SEVSGRRLWGLFSERFGTADAFFKDHFVLNYCPLVWMSSTGANLTPDK 154
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BLAST of mRNA_H-elongata_contig198743.5573.1 vs. uniprot
Match: UPI0019034DE8 (single-stranded DNA-binding protein n=1 Tax=Luteolibacter pohnpeiensis TaxID=454153 RepID=UPI0019034DE8)

HSP 1 Score: 68.6 bits (166), Expect = 1.130e-12
Identity = 29/48 (60.42%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 SKVSGKRLWGFFKRRFGTADAWGDKMFAYSYCPLTFMSSSGGNITPDK 144
            S+VSG+RLWG F+ RFGTADA+ +  F  +YCPL +MS++G N+TPDK
Sbjct:  110 SEVSGRRLWGLFQDRFGTADAFFEDHFVTNYCPLVWMSATGANLTPDK 157
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BLAST of mRNA_H-elongata_contig198743.5573.1 vs. uniprot
Match: A0A3N5VL41_9BACT (Single-strand selective monofunctional uracil-DNA glycosylase n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A3N5VL41_9BACT)

HSP 1 Score: 67.8 bits (164), Expect = 2.180e-12
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 SKVSGKRLWGFFKRRFGTADAWGDKMFAYSYCPLTFMSSSGGNITPDK 144
            S+VSG+RLWG F  RFGTADA+    F  +YCPL +MS++G N+TPDK
Sbjct:  110 SEVSGRRLWGLFAERFGTADAFFKDHFVLNYCPLVWMSATGANLTPDK 157
[Close]
BLAST of mRNA_H-elongata_contig198743.5573.1 vs. uniprot
Match: A0A7C5PES2_9BACT (Single-stranded DNA-binding protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C5PES2_9BACT)

HSP 1 Score: 67.0 bits (162), Expect = 4.290e-12
Identity = 28/48 (58.33%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 SKVSGKRLWGFFKRRFGTADAWGDKMFAYSYCPLTFMSSSGGNITPDK 144
            S+VSG+RLWG+ + RFGT  A+ ++ F Y+YCPL+FM  SG N TPDK
Sbjct:  106 SEVSGRRLWGWARERFGTPMAFFERFFVYNYCPLSFMEESGRNFTPDK 153
[Close]
BLAST of mRNA_H-elongata_contig198743.5573.1 vs. uniprot
Match: UPI001B8AC5B4 (single-stranded DNA-binding protein n=1 Tax=Luteolibacter ambystomatis TaxID=2824561 RepID=UPI001B8AC5B4)

HSP 1 Score: 67.0 bits (162), Expect = 4.290e-12
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 SKVSGKRLWGFFKRRFGTADAWGDKMFAYSYCPLTFMSSSGGNITPDK 144
            S+VSG+RLWG F  RFGTA+A+    F  +YCPL +MSS+G N+TPDK
Sbjct:  109 SEVSGRRLWGLFAERFGTAEAFFKDHFVANYCPLVWMSSTGANLTPDK 156
[Close]
BLAST of mRNA_H-elongata_contig198743.5573.1 vs. uniprot
Match: Q39ZI0_GEOMG (Uncharacterized protein n=2 Tax=Geobacter TaxID=28231 RepID=Q39ZI0_GEOMG)

HSP 1 Score: 66.6 bits (161), Expect = 5.650e-12
Identity = 27/48 (56.25%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 SKVSGKRLWGFFKRRFGTADAWGDKMFAYSYCPLTFMSSSGGNITPDK 144
            S+VSG+RLWGF + RFGT + +  + F  +YCPL F+++ GGNITPDK
Sbjct:  107 SEVSGRRLWGFIRERFGTPERFFARFFVANYCPLLFLTAEGGNITPDK 154
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig198743.5573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKH1_ECTSI3.700e-2387.50Uracil-DNA glycosylase superfamily protein n=2 Tax... [more]
A0A7W1F2J4_9BACT1.480e-1360.42Single-stranded DNA-binding protein n=1 Tax=Planct... [more]
A0A4Q2X1G7_9BACT3.760e-1362.50Single-stranded DNA-binding protein (Fragment) n=2... [more]
A0A832H887_9BACT5.570e-1362.50Single-strand selective monofunctional uracil-DNA ... [more]
A0A4V1SDI5_9BACT5.570e-1362.50Single-strand selective monofunctional uracil-DNA ... [more]
UPI0019034DE81.130e-1260.42single-stranded DNA-binding protein n=1 Tax=Luteol... [more]
A0A3N5VL41_9BACT2.180e-1260.42Single-strand selective monofunctional uracil-DNA ... [more]
A0A7C5PES2_9BACT4.290e-1258.33Single-stranded DNA-binding protein n=1 Tax=Planct... [more]
UPI001B8AC5B44.290e-1260.42single-stranded DNA-binding protein n=1 Tax=Luteol... [more]
Q39ZI0_GEOMG5.650e-1256.25Uncharacterized protein n=2 Tax=Geobacter TaxID=28... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig198743contigH-elongata_contig198743:207..689 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.8
Seed ortholog evalue1.5e-18
Seed eggNOG ortholog2880.D8LKH1
Preferred nameSMUG1
KEGG koko:K10800
KEGG Pathwayko03410,map03410
GOsGO:0000702,GO:0000703,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0004844,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006220,GO:0006244,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006304,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009166,GO:0009219,GO:0009223,GO:0009262,GO:0009264,GO:0009394,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0017065,GO:0018130,GO:0019104,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0031974,GO:0031981,GO:0033554,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045008,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0055086,GO:0070013,GO:0071704,GO:0072527,GO:0072529,GO:0090304,GO:0097159,GO:0097506,GO:0140097,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576
EggNOG free text desc.single-strand selective uracil DNA N-glycosylase activity
EggNOG OGs28KKK@1,2QT20@2759
Ec32 ortholog descriptionUracil-DNA glycosylase-like
Ec32 orthologEc-16_002940.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size147
Cds size147
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930121.980059-CDS-H-elongata_contig198743:206..2761622930121.980059-CDS-H-elongata_contig198743:206..276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198743 207..276 +
1691679289.253992-CDS-H-elongata_contig198743:206..2761691679289.253992-CDS-H-elongata_contig198743:206..276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198743 207..276 +
1622930122.0030591-CDS-H-elongata_contig198743:612..6891622930122.0030591-CDS-H-elongata_contig198743:612..689Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198743 613..689 +
1691679289.27297-CDS-H-elongata_contig198743:612..6891691679289.27297-CDS-H-elongata_contig198743:612..689Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198743 613..689 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig198743.5573.1prot_H-elongata_contig198743.5573.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig198743 207..689 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig198743.5573.1

>prot_H-elongata_contig198743.5573.1 ID=prot_H-elongata_contig198743.5573.1|Name=mRNA_H-elongata_contig198743.5573.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
SKVSGKRLWGFFKRRFGTADAWGDKMFAYSYCPLTFMSSSGGNITPDK*
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mRNA from alignment at H-elongata_contig198743:207..689+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig198743.5573.1 ID=mRNA_H-elongata_contig198743.5573.1|Name=mRNA_H-elongata_contig198743.5573.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=483bp|location=Sequence derived from alignment at H-elongata_contig198743:207..689+ (Himanthalia elongata Himel1 dioecious)
TCAAAGGTTAGCGGGAAGCGCCTCTGGGGATTCTTCAAGCGGAGATTCGG
CACGGCAGACGCGTGGGGAGGTGAGTAGGGGTTTGGGCATGTCGGCTGCT
GCACATGCAACGCCTGCTCAGAGCACGATTCAGCCGACCGTAGGGCTCTG
CCGCGAGGAAAAACTGTCGCGTGTCCGAGTCAAACATGCGTGCCCCGGGC
ATCAAACCCGCAGAAACAGCGGGATATTTTCCTTCTGAACTGACGGATCT
GGAGGAAGGGAAGCTAAAATGAGGTCATTTTTTTTGAATATCTTGTCCTA
CGCTGCCTTCCGCCTCTCTCGCATGTCGCGACAATTTGCGCCGCTGCTGC
CGTTGTTGTGACATCATTTCCGTTCTCTCATTTCTCCTCTTGACGCGCGG
AGAAAGACAAGATGTTCGCGTATAGCTACTGCCCTCTGACCTTCATGAGC
TCTTCTGGTGGGAACATCACCCCGGACAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig198743:207..689+

>mRNA_H-elongata_contig198743.5573.1 ID=mRNA_H-elongata_contig198743.5573.1|Name=mRNA_H-elongata_contig198743.5573.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig198743:207..689+ (Himanthalia elongata Himel1 dioecious)
TCAAAGGTTAGCGGGAAGCGCCTCTGGGGATTCTTCAAGCGGAGATTCGG
CACGGCAGACGCGTGGGGAGTCAAAGGTTAGCGGGAAGCGCCTCTGGGGA
TTCTTCAAGCGGAGATTCGGCACGGCAGACGCGTGGGGAGACAAGATGTT
CGCGTATAGCTACTGCCCTCTGACCTTCATGAGCTCTTCTGGTGGGAACA
TCACCCCGGACAAGTGAACAAGATGTTCGCGTATAGCTACTGCCCTCTGA
CCTTCATGAGCTCTTCTGGTGGGAACATCACCCCGGACAAGTGA
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