prot_H-elongata_contig192717.5334.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig192717.5334.1
Unique Nameprot_H-elongata_contig192717.5334.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length296
Homology
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BLAST of mRNA_H-elongata_contig192717.5334.1 vs. uniprot
Match: A0A6H5L4T0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4T0_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.150e-10
Identity = 72/185 (38.92%), Postives = 94/185 (50.81%), Query Frame = 0 
Query:    4 STEVSLRERIAKLGARRPRQDRKSESART-------------------------VSSVGHAHSLRDFGSLAGGI-DGDHAGVLRSPIEPSRGGGGGL-----------ASPSSASNMIFTQEALGNLSDQVASL-----RHSSEENRENRKLIMSRRLSRGGSLGGRRSNTKNSIDPAAGEAGEA 146
            S + S+RER+A+L ARR RQ R++ + RT                         V++ G  H LR  GS   GI  G   G +RSP   SR G G              SPSS+SN++ TQEALGNL++ +ASL     + S+ ENRE+RK  +SRRLSRG SLG  R+    +     G A EA
Sbjct: 2697 SADESVRERMARLSARR-RQSRQATAPRTGEEPLQKAPADSAMDDGEGGAAANVVATAGRRHLLRGPGSWTSGIGSGSGPGGVRSP-RLSRAGHGXXXXXXXXXXXXXGSPSSSSNLVVTQEALGNLNNNLASLMSVKRQASTSENRESRKQSISRRLSRGASLGTFRATAVATEAAELGAAEEA 2879
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig192717.5334.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4T0_9PHAE1.150e-1038.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig192717contigH-elongata_contig192717:237..1124 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig192717.5334.1mRNA_H-elongata_contig192717.5334.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig192717 237..1124 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig192717.5334.1 ID=prot_H-elongata_contig192717.5334.1|Name=mRNA_H-elongata_contig192717.5334.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=296bp
STRSTEVSLRERIAKLGARRPRQDRKSESARTVSSVGHAHSLRDFGSLAG
GIDGDHAGVLRSPIEPSRGGGGGLASPSSASNMIFTQEALGNLSDQVASL
RHSSEENRENRKLIMSRRLSRGGSLGGRRSNTKNSIDPAAGEAGEAAAEE
AAALGASPAAVQAAADAAVAEFRASRRRVVVERPECLSRSKTEPCAFETL
PDEERLDFDHGYAGHHSRSSTSIAANMHLLDPDPSVASEEGYYARDDRGP
SSSVSSLLGKQDDLVDSWPEGSDTATEDGPLAFSRPGSAGEKLKPR
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