mRNA_H-elongata_contig192717.5334.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig192717.5334.1
Unique NamemRNA_H-elongata_contig192717.5334.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig192717.5334.1 vs. uniprot
Match: A0A6H5L4T0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4T0_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.150e-10
Identity = 72/185 (38.92%), Postives = 94/185 (50.81%), Query Frame = 1 
Query:   10 STEVSLRERIAKLGARRPRQDRKSESART-------------------------VSSVGHAHSLRDFGSLAGGI-DGDHAGVLRSPIEPSRGGGGGL-----------ASPSSASNMIFTQEALGNLSDQVASL-----RHSSEENRENRKLIMSRRLSRGGSLGGRRSNTKNSIDPAAGEAGEA 438
            S + S+RER+A+L ARR RQ R++ + RT                         V++ G  H LR  GS   GI  G   G +RSP   SR G G              SPSS+SN++ TQEALGNL++ +ASL     + S+ ENRE+RK  +SRRLSRG SLG  R+    +     G A EA
Sbjct: 2697 SADESVRERMARLSARR-RQSRQATAPRTGEEPLQKAPADSAMDDGEGGAAANVVATAGRRHLLRGPGSWTSGIGSGSGPGGVRSP-RLSRAGHGXXXXXXXXXXXXXGSPSSSSNLVVTQEALGNLNNNLASLMSVKRQASTSENRESRKQSISRRLSRGASLGTFRATAVATEAAELGAAEEA 2879
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig192717.5334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4T0_9PHAE1.150e-1038.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig192717contigH-elongata_contig192717:237..1124 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size888
Cds size888
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930098.8084412-CDS-H-elongata_contig192717:236..11241622930098.8084412-CDS-H-elongata_contig192717:236..1124Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig192717 237..1124 +
1691679279.3859823-CDS-H-elongata_contig192717:236..11241691679279.3859823-CDS-H-elongata_contig192717:236..1124Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig192717 237..1124 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig192717.5334.1prot_H-elongata_contig192717.5334.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig192717 237..1124 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig192717.5334.1

>prot_H-elongata_contig192717.5334.1 ID=prot_H-elongata_contig192717.5334.1|Name=mRNA_H-elongata_contig192717.5334.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=296bp
STRSTEVSLRERIAKLGARRPRQDRKSESARTVSSVGHAHSLRDFGSLAG
GIDGDHAGVLRSPIEPSRGGGGGLASPSSASNMIFTQEALGNLSDQVASL
RHSSEENRENRKLIMSRRLSRGGSLGGRRSNTKNSIDPAAGEAGEAAAEE
AAALGASPAAVQAAADAAVAEFRASRRRVVVERPECLSRSKTEPCAFETL
PDEERLDFDHGYAGHHSRSSTSIAANMHLLDPDPSVASEEGYYARDDRGP
SSSVSSLLGKQDDLVDSWPEGSDTATEDGPLAFSRPGSAGEKLKPR
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mRNA from alignment at H-elongata_contig192717:237..1124+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig192717.5334.1 ID=mRNA_H-elongata_contig192717.5334.1|Name=mRNA_H-elongata_contig192717.5334.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=888bp|location=Sequence derived from alignment at H-elongata_contig192717:237..1124+ (Himanthalia elongata Himel1 dioecious)
TCGACGCGCTCGACGGAAGTATCGCTGCGCGAGCGGATTGCCAAGCTTGG
CGCACGTCGCCCACGGCAAGATAGGAAAAGTGAGAGTGCCAGGACGGTAA
GTAGTGTCGGACATGCCCACAGCCTCCGCGATTTCGGATCTTTGGCCGGC
GGGATTGATGGTGACCATGCGGGTGTTTTAAGATCACCGATCGAGCCATC
ACGCGGTGGTGGCGGTGGTCTTGCTAGCCCTTCTTCGGCTTCAAATATGA
TCTTCACTCAAGAAGCTTTGGGTAACCTTAGCGATCAAGTAGCGTCATTG
AGGCACAGCTCCGAAGAGAATCGCGAAAATCGCAAGCTGATAATGTCTCG
TCGACTCTCTCGTGGCGGATCCCTTGGAGGGCGTCGCTCGAATACGAAGA
ACTCAATCGATCCAGCCGCCGGCGAGGCCGGGGAGGCTGCAGCAGAAGAA
GCCGCCGCGCTCGGCGCATCACCGGCGGCGGTGCAGGCTGCAGCGGATGC
GGCGGTCGCGGAGTTTCGAGCCAGCCGACGTCGCGTCGTGGTCGAGCGCC
CCGAGTGTTTGAGTCGCTCTAAGACGGAGCCTTGCGCTTTCGAAACGCTT
CCCGATGAGGAGAGACTAGATTTCGACCATGGCTACGCTGGCCACCACAG
CAGATCTTCCACGTCAATAGCGGCGAATATGCATTTACTGGACCCCGATC
CGTCAGTGGCGAGCGAAGAGGGTTACTATGCACGGGACGATCGAGGCCCG
TCGAGCTCCGTGTCGAGCTTACTTGGAAAGCAAGATGACCTTGTCGACTC
GTGGCCGGAGGGTAGCGATACGGCGACCGAAGACGGGCCGCTAGCTTTTT
CACGGCCTGGGTCAGCAGGAGAGAAGCTTAAACCAAGA
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Coding sequence (CDS) from alignment at H-elongata_contig192717:237..1124+

>mRNA_H-elongata_contig192717.5334.1 ID=mRNA_H-elongata_contig192717.5334.1|Name=mRNA_H-elongata_contig192717.5334.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1776bp|location=Sequence derived from alignment at H-elongata_contig192717:237..1124+ (Himanthalia elongata Himel1 dioecious)
TCGACGCGCTCGACGGAAGTATCGCTGCGCGAGCGGATTGCCAAGCTTGG
CGCACGTCGCCCACGGCAAGATAGGAAAAGTGAGAGTGCCAGGACGGTAA
GTAGTGTCGGACATGCCCACAGCCTCCGCGATTTCGGATCTTTGGCCGGC
GGGATTGATGGTGACCATGCGGGTGTTTTAAGATCACCGATCGAGCCATC
ACGCGGTGGTGGCGGTGGTCTTGCTAGCCCTTCTTCGGCTTCAAATATGA
TCTTCACTCAAGAAGCTTTGGGTAACCTTAGCGATCAAGTAGCGTCATTG
AGGCACAGCTCCGAAGAGAATCGCGAAAATCGCAAGCTGATAATGTCTCG
TCGACTCTCTCGTGGCGGATCCCTTGGAGGGCGTCGCTCGAATACGAAGA
ACTCAATCGATCCAGCCGCCGGCGAGGCCGGGGAGGCTGCAGCAGAAGAA
GCCGCCGCGCTCGGCGCATCACCGGCGGCGGTGCAGGCTGCAGCGGATGC
GGCGGTCGCGGAGTTTCGAGCCAGCCGACGTCGCGTCGTGGTCGAGCGCC
CCGAGTGTTTGAGTCGCTCTAAGACGGAGCCTTGCGCTTTCGAAACGCTT
CCCGATGAGGAGAGACTAGATTTCGACCATGGCTACGCTGGCCACCACAG
CAGATCTTCCACGTCAATAGCGGCGAATATGCATTTACTGGACCCCGATC
CGTCAGTGGCGAGCGAAGAGGGTTACTATGCACGGGACGATCGAGGCCCG
TCGAGCTCCGTGTCGAGCTTACTTGGAAAGCAAGATGACCTTGTCGACTC
GTGGCCGGAGGGTAGCGATACGGCGACCGAAGACGGGCCGCTAGCTTTTT
CACGGCCTGGGTCAGCAGGAGAGAAGCTTAAACCAAGATCGACGCGCTCG
ACGGAAGTATCGCTGCGCGAGCGGATTGCCAAGCTTGGCGCACGTCGCCC
ACGGCAAGATAGGAAAAGTGAGAGTGCCAGGACGGTAAGTAGTGTCGGAC
ATGCCCACAGCCTCCGCGATTTCGGATCTTTGGCCGGCGGGATTGATGGT
GACCATGCGGGTGTTTTAAGATCACCGATCGAGCCATCACGCGGTGGTGG
CGGTGGTCTTGCTAGCCCTTCTTCGGCTTCAAATATGATCTTCACTCAAG
AAGCTTTGGGTAACCTTAGCGATCAAGTAGCGTCATTGAGGCACAGCTCC
GAAGAGAATCGCGAAAATCGCAAGCTGATAATGTCTCGTCGACTCTCTCG
TGGCGGATCCCTTGGAGGGCGTCGCTCGAATACGAAGAACTCAATCGATC
CAGCCGCCGGCGAGGCCGGGGAGGCTGCAGCAGAAGAAGCCGCCGCGCTC
GGCGCATCACCGGCGGCGGTGCAGGCTGCAGCGGATGCGGCGGTCGCGGA
GTTTCGAGCCAGCCGACGTCGCGTCGTGGTCGAGCGCCCCGAGTGTTTGA
GTCGCTCTAAGACGGAGCCTTGCGCTTTCGAAACGCTTCCCGATGAGGAG
AGACTAGATTTCGACCATGGCTACGCTGGCCACCACAGCAGATCTTCCAC
GTCAATAGCGGCGAATATGCATTTACTGGACCCCGATCCGTCAGTGGCGA
GCGAAGAGGGTTACTATGCACGGGACGATCGAGGCCCGTCGAGCTCCGTG
TCGAGCTTACTTGGAAAGCAAGATGACCTTGTCGACTCGTGGCCGGAGGG
TAGCGATACGGCGACCGAAGACGGGCCGCTAGCTTTTTCACGGCCTGGGT
CAGCAGGAGAGAAGCTTAAACCAAGA
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