prot_H-elongata_contig18962.5219.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig18962.5219.1
Unique Nameprot_H-elongata_contig18962.5219.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length483
Homology
BLAST of mRNA_H-elongata_contig18962.5219.1 vs. uniprot
Match: D7FM66_ECTSI (WRNEXO (WERNER SYNDROME-LIKE EXONUCLEASE) 3\'-5\' exonuclease/ nucleic acid binding n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM66_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 8.950e-60
Identity = 127/242 (52.48%), Postives = 150/242 (61.98%), Query Frame = 0
Query:   77 GVAGDVCRLEKEYPQLRYNG-VKGIVCLSEMAKRKSQPERRRRGMWSLSDLCAEMLHLELAKPADVRTSDWEKRPLSVDQLFYAASDAYAGLRLWQVMREMDDTMLRQSEPNGRHAVCEINHFVGDQQGGTVDDTGVERCRAKDDETAKERARSSEAARAGTVG-GEPQSGVGATSVR-----VTGERPANI---PRLPSSKLETHRMWYGDGMSVESIAEVRCIKTSTVLGYLSDCIEAGL 308
            GV GDV RLE+EY QLR  G V G+V LSE+AKRK  PERRRRGMWSL+DLCAE+L LEL KPA +RT  WEKRPLSVDQLFYAA+DAYAGLRLWQ M EM D +L++S+ NG              +G +       RC                AA AG  G G+ + GV A          T  R A     PRLP SKLETHR+W+ DG+SV+++AEVRC K +TV GYLS  +  GL
Sbjct:   10 GVGGDVNRLEREYDQLRAGGGVGGVVDLSEVAKRKVAPERRRRGMWSLADLCAEVLELELKKPASLRTGSWEKRPLSVDQLFYAAADAYAGLRLWQTMHEMPDLVLQRSDANGPRV-----------EGTSAAAGSPRRCDVN-------------AAAAGGEGKGQARGGVDAQPAXXGQEMATASRNAETTTRPRLPLSKLETHRLWHEDGLSVDAVAEVRCNKANTVRGYLSADLPNGL 227          
BLAST of mRNA_H-elongata_contig18962.5219.1 vs. uniprot
Match: A0A7S0A073_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0A073_9DINO)

HSP 1 Score: 101 bits (252), Expect = 1.050e-20
Identity = 86/283 (30.39%), Postives = 133/283 (47.00%), Query Frame = 0
Query:   62 LVRVLSDPKIVLAGVGVAGDVCRLEKEYP---------------QLRYNG-----VKGIVCLSEMAKRKSQPERRRRGMWSLSDLCAEMLHLELAKPADVRTSDWEKRPLSVDQLFYAASDAYAGLRLWQVMREMDDTMLRQSEPNGRHAVCEINHFVGDQQGGTVDDTGVERCRAKDDETAKERARSSEAARAGTVGGEPQSGVGATSVRVTGERPANIPRLPSSKLETHRMWYGDGMSVESIAEVRCIKTSTVLGYLSDCIEAGLPYTWERLNI-ASDTEA 323
            +  +L  P ++  GVG  GD  +LE++YP               Q    G      +G++ L+++A R    +   R   SL+ LC E+L   L KPADVR S+WE  PL+ +QL YAA+DA+AGLR +Q +R     ++ +     R     + H    +          E C+++                           VGA +V      P++   LP +K   +R+++ +G++ +SIAE+R I+TSTVL YL+D I AG  Y      I A+D EA
Sbjct:    2 VAALLGRPDVLKVGVGAEGDAHKLERDYPWAGAPAACEKGGSEAQCHDPGRGRFRARGVLDLNDLACRVLGGKPGSRPKASLAALCEELLGCSLPKPADVRCSNWEAVPLTEEQLGYAATDAWAGLRCFQELRARSPEVVAEVATALRKDTIPMAHSARKRP------APAEWCKSEQ--------------------------VGAVAV------PSD---LPPAKRCVYRLFFENGLAADSIAELRGIQTSTVLSYLADAITAGYAYNLADFEISAADWEA 243          
BLAST of mRNA_H-elongata_contig18962.5219.1 vs. uniprot
Match: A0A7S2H6Y7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H6Y7_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.240e-20
Identity = 78/259 (30.12%), Postives = 110/259 (42.47%), Query Frame = 0
Query:   59 PESLVRVLSDPKIVLAGVGVAGDVCRLEKEYPQLRYNGVKGIVCLSEMAKRKSQPERRRRGMWSLSDLCAEMLHLELAKPADVRTSDWEKRPLSVDQLFYAASDAYAGLRLWQVMREMDDTMLRQSEPNGRHAVCEINHFVGDQQGGTVDDTGVERCRAKDDETAKERARSSEAARAGTVGGEPQSGVGATSVRVTGERPANIPRLPSSKLETHRMWYGDGMSVESIAEVRCIKTSTVLGYLSDCIEAGLPYTWERLNI 317
            P  L  +LSDP++   GVG   D  +L  +        V G+V LS++A+RK    +      SL  LCA +L   L KP  +R S+WE+RPLS  QL YAA+DAYAGLRL+Q +  + D ++      G    C  NH  G                                                    +       +  L  SKL  + +++  GMS   I+  R +K +TVLGYL + I AG  Y ++R  I
Sbjct:    6 PRELACILSDPQLFKCGVGARNDATKLHNDLGV----PVHGVVELSDLARRKLVDTQM-----SLQGLCASVLKRRLEKPPHIRISNWEQRPLSGLQLSYAATDAYAGLRLYQKLEPLPDRVVTLEPSAGMINSC--NHGCG----------------------------------------------------IPVPAAHTVKSLSPSKLAVYELFHHHGMSPAEISLTRNLKITTVLGYLGEAIAAGYAYDFKRFGI 201          
BLAST of mRNA_H-elongata_contig18962.5219.1 vs. uniprot
Match: A0A6H5KKF2_9PHAE (HTH_40 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKF2_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.270e-20
Identity = 66/158 (41.77%), Postives = 86/158 (54.43%), Query Frame = 0
Query:  173 MREMDDTMLRQSEPNGRHAVCEINHFVGDQQGGTVDDTGVERCRAKDDETAKERARSSEAARAGTVGGEPQSGVGATSVRVTGERPANIPRLPSSKLETHRMWYGDGMSVESIAEVRCIKTSTVLGYLSDCIEAGLPYTWERLNIASDTEADIVRALV 330
            M EM D +L++S+ NG   V + +   G  +    D T    C        K +AR       G V   P  G    +           PRLP SKLETHR+W+ DG+SV+++AEVRC K +TV GYLSDCIEAGLPY W R+ I +D E +IV AL+
Sbjct:    1 MHEMPDLVLQRSDANGSR-VEDTSAAAGSPR--RCDGTAAAAC-----SEGKGQAR-------GGVDARPARGGQEMATASRNAETTTRPRLPLSKLETHRLWHEDGLSVDAVAEVRCNKANTVRGYLSDCIEAGLPYDWTRVGIDADEEEEIVTALL 143          
BLAST of mRNA_H-elongata_contig18962.5219.1 vs. uniprot
Match: A0A1Y1IE41_KLENI (Werner syndrome-like exonuclease n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IE41_KLENI)

HSP 1 Score: 94.7 bits (234), Expect = 6.930e-17
Identity = 86/283 (30.39%), Postives = 127/283 (44.88%), Query Frame = 0
Query:   58 LPESLVRVLSDPKIVLAGVGVAGDVCRLEKEYPQLRYNGVK--GIVCLSEMAKRKSQPERRRRGMWSLSDLCAEMLHLELAKPADVRTSDWEKRPLSVDQLFYAASDAYAGLRLWQVMREMDDTMLR---QSEPNGRHAVCEINHFVGDQQGGTVDDTGVERCRAKDDETAKERARSSEAARAGTVGGEPQSGVGATSVRVTGERPANIPRLPS------SKLETHRMWYGDGMSVESIAEVRCIKTSTVLGYLSDCIEAGLPYTWERLNIASDTEADIVRAL 329
            L  SL  +L +  +  AG G+ GD  +L +++      GV   G+  LS++A  + QP+   R  WSL+ L  E +  ++ KP   R SDWE+ PLS DQ  YAA+DAYA LRL+QV+  +     R   +  P       E+N  V     G       E                         G EP S              A IP +P       SK++ HR+ + DG+++E IA  + ++ +TV  YL +  +AGL Y W RL ++      I RA+
Sbjct:  375 LTSSLRALLDEQSVGKAGAGIYGDAQKLRRDF------GVSMGGLRDLSDLANERLQPKDGPR-KWSLTALAQEAMLQQVEKPPKQRISDWERLPLSPDQRQYAATDAYASLRLYQVLMSLPAPPPRPILRPLPQS-----ELNSLVNP---GFXXXPXXELX----------------------PGAEPTS-------------EAWIPAVPEPSYLAPSKMDVHRL-HLDGLTIEEIAVKKGVRVTTVESYLVEATQAGLAYAWHRLGVSDAVRERIERAV 606          
BLAST of mRNA_H-elongata_contig18962.5219.1 vs. uniprot
Match: A0A7S0ZVH3_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S0ZVH3_NOCSC)

HSP 1 Score: 89.7 bits (221), Expect = 1.730e-15
Identity = 81/283 (28.62%), Postives = 124/283 (43.82%), Query Frame = 0
Query:   58 LPESLVRVLSDPKIVLAGVGVAGDVCRLEKEYPQLRYNGV-----KGIVCLSEMAKRK---SQPERRRRGMWSLSDLCAEMLHLELAKPADVRTSDWEKRPLSVDQLFYAASDAYAGLRLWQVMREMDDTMLRQSEPNGRHAVCEINHFVGDQQGGTVDDTGVERCRAKDDETAKERARSSEAARAGTVGGEPQSGVGATSVRVTGERPANIPRLPSSKLETHRMWYGDGMSVESIAEVRCIKTSTVLGYLSDCIEAGLPYTWERLNIASDTEADIVRALVTM 332
            LP  L  +L++  ++  GVG  GD  +L  +Y     +G      + +V L+E+A R    +QP  R R   SL  LC E+L   LAK  +VR  +WE  PLS  Q+ YAA+DA+AG R ++V+  +         P    A    + F   +         V + +A  D                          G TS  V     + I  LP +K   HR++  +G++ +SIAE+R ++  TV  YL+D I AG  Y      +++D    I  A   +
Sbjct:  217 LPGPLAALLANEDVIKVGVGAEGDAHKLAADYSLKVIDGTSPFRARSVVDLNEVAWRALHGAQPGTRERK--SLRTLCFELLSQNLAKDEEVRCGNWEAVPLSQTQVDYAATDAWAGYRCFEVLHSL--------APKSLDASLATSSFGKGEPSAPC----VRKRKAPGD--------------------------GCTSEPVA--EASTILDLPPAKRLCHRLFCENGLTADSIAELRGVQAGTVRSYLADAIAAGHAYDLADFELSADDRTAITVAFAAI 457          
BLAST of mRNA_H-elongata_contig18962.5219.1 vs. uniprot
Match: A0A5J4XJR2_9CHLO (Werner Syndrome-like exonuclease-like (Fragment) n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XJR2_9CHLO)

HSP 1 Score: 83.2 bits (204), Expect = 3.400e-14
Identity = 50/119 (42.02%), Postives = 72/119 (60.50%), Query Frame = 0
Query:   58 LPESLVRVLSDPKIVLAGVGVAGDVCRLEKEYPQLRYNGVK--GIVCLSEMAKRK--SQPERRRRGMWSLSDLCAEMLHLELAKPADVRTSDWEKRPLSVDQLFYAASDAYAGLRLWQV 172
            L  +L+++L   +I   GVG+ GD  +L +++      GV+  G+VCLSE A  +  S    R    WSL+ L  E+LHL L K  D+R S+WE  PLS +Q  YAA+DAYA ++L+QV
Sbjct:  157 LTPALIQILECEEIKKIGVGICGDAHKLHRDF------GVQCVGLVCLSEEANVRLCSSANGRMPQKWSLAGLMQELLHLTLDKGTDIRCSNWETCPLSSEQRAYAATDAYAAVKLYQV 269          
BLAST of mRNA_H-elongata_contig18962.5219.1 vs. uniprot
Match: A0A2K1JPS4_PHYPA (3'-5' exonuclease domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JPS4_PHYPA)

HSP 1 Score: 83.2 bits (204), Expect = 1.360e-13
Identity = 48/116 (41.38%), Postives = 73/116 (62.93%), Query Frame = 0
Query:   58 LPESLVRVLSDPKIVLAGVGVAGDVCRLEKEYPQLRYNGVKGIVCLSEMAKRKSQPERRRRGMWSLSDLCAEMLHLELAKPADVRTSDWEKRPLSVDQLFYAASDAYAGLRLWQVM 173
            +P SL  +L DP I+  GVG+ GDV +L+++Y +L+   ++G+V LSE+A +K      R   WSLS L   +   ++ K  ++R  DWE  PLS  QL YAA+DA+A L L+Q++
Sbjct:  279 IPSSLYAILEDPTILKTGVGIHGDVSKLQRDY-KLK---IQGVVNLSEIANQKLG----RWQSWSLSSLSQALTCKQVEKVPNIRCGDWEACPLSPPQLQYAATDAFASLYLYQIL 386          
BLAST of mRNA_H-elongata_contig18962.5219.1 vs. uniprot
Match: A0A087H2C2_ARAAL (3'-5' exonuclease domain-containing protein n=1 Tax=Arabis alpina TaxID=50452 RepID=A0A087H2C2_ARAAL)

HSP 1 Score: 77.8 bits (190), Expect = 1.430e-12
Identity = 49/132 (37.12%), Postives = 74/132 (56.06%), Query Frame = 0
Query:   58 LPESLVRVLSDPKIVLAGVGVAGDVCRLEKEYPQLRYNGVKGIVCLSEMAKRKSQPERRRRGMWSLSDLCAEMLHLELAKPADVRTSDWEKRPLSVDQLFYAASDAYAGLRLWQVMREMDDTMLRQSEPNGR 189
            +P+ L  ++ D  +V  GVG+ GD  +L  +Y       +KGI  LS +A +K     ++   W L+ L   ++  EL KP  +R  +WE  PLSV QL YAA+DAYA   L+QV++++ D   R +E  GR
Sbjct:  109 IPQGLKDLIEDSTLVKVGVGIDGDSVKLFNDYGV----SIKGIEDLSVLANKKLGGVWKQ---WGLASLTKTLVCKELLKPNHIRLGNWEAYPLSVIQLQYAATDAYASWNLYQVLKDLPDAT-RFAELGGR 232          
BLAST of mRNA_H-elongata_contig18962.5219.1 vs. uniprot
Match: A0A6I8Q2N7_XENTR (DNA helicase n=7 Tax=Xenopus tropicalis TaxID=8364 RepID=A0A6I8Q2N7_XENTR)

HSP 1 Score: 81.3 bits (199), Expect = 1.880e-12
Identity = 47/119 (39.50%), Postives = 72/119 (60.50%), Query Frame = 0
Query:   59 PESLVRVLSDPKIVLAGVGVAGDVCRLEKEYPQLRYNGVKGIVCLSEMAKRKSQPERRRRGMWSLSDLCAEMLHLELAKPADVRTSDWEKRPLSVDQLFYAASDAYAGLRLWQVMREMD 177
            P+ L R+L D  +   GVG+ GD  +L  +Y +L+   +KG + LSE+A +K + + +    WSL+ L   +   +L K + +R S+W+  PLS DQ  YAASDAYAGL ++Q +  MD
Sbjct:  115 PKGLRRLLEDESVKKVGVGIEGDQWKLMSDY-ELK---LKGFIELSEVANQKLRCKEK----WSLNGLVKHLFKKQLLKDSSIRCSNWDIFPLSTDQKLYAASDAYAGLLIYQKLECMD 225          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18962.5219.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM66_ECTSI8.950e-6052.48WRNEXO (WERNER SYNDROME-LIKE EXONUCLEASE) 3\'-5\' ... [more]
A0A7S0A073_9DINO1.050e-2030.39Hypothetical protein (Fragment) n=1 Tax=Pyrodinium... [more]
A0A7S2H6Y7_9STRA1.240e-2030.12Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A6H5KKF2_9PHAE1.270e-2041.77HTH_40 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A1Y1IE41_KLENI6.930e-1730.39Werner syndrome-like exonuclease n=1 Tax=Klebsormi... [more]
A0A7S0ZVH3_NOCSC1.730e-1528.62Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A5J4XJR2_9CHLO3.400e-1442.02Werner Syndrome-like exonuclease-like (Fragment) n... [more]
A0A2K1JPS4_PHYPA1.360e-1341.383'-5' exonuclease domain-containing protein n=2 Ta... [more]
A0A087H2C2_ARAAL1.430e-1237.123'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6I8Q2N7_XENTR1.880e-1239.50DNA helicase n=7 Tax=Xenopus tropicalis TaxID=8364... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR0025623'-5' exonuclease domainPFAMPF01612DNA_pol_A_exo1coord: 60..175
e-value: 2.2E-11
score: 43.8
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 45..185
e-value: 5.1E-32
score: 112.6
IPR029491Helicase Helix-turn-helix domainPFAMPF14493HTH_40coord: 268..329
e-value: 1.2E-9
score: 38.5
NoneNo IPR availablePANTHERPTHR13620:SF45WERNER SYNDROME-LIKE EXONUCLEASEcoord: 58..184
NoneNo IPR availablePANTHERPTHR136203-5 EXONUCLEASEcoord: 58..184
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 57..175

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18962contigH-elongata_contig18962:2585..5443 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18962.5219.1mRNA_H-elongata_contig18962.5219.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig18962 2459..5504 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig18962.5219.1 ID=prot_H-elongata_contig18962.5219.1|Name=mRNA_H-elongata_contig18962.5219.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=483bp
MGANTSRIQADADYLGAQGQKAFVDATRSSRQNGATKTGDGGQGALGVGV
TDGDERVLPESLVRVLSDPKIVLAGVGVAGDVCRLEKEYPQLRYNGVKGI
VCLSEMAKRKSQPERRRRGMWSLSDLCAEMLHLELAKPADVRTSDWEKRP
LSVDQLFYAASDAYAGLRLWQVMREMDDTMLRQSEPNGRHAVCEINHFVG
DQQGGTVDDTGVERCRAKDDETAKERARSSEAARAGTVGGEPQSGVGATS
VRVTGERPANIPRLPSSKLETHRMWYGDGMSVESIAEVRCIKTSTVLGYL
SDCIEAGLPYTWERLNIASDTEADIVRALVTMVGAKRSGWGGTVFAKGGV
TTDHAHLLNEATDAKDAVSGAESLSTEGEGIHRYSRVNLPVQATSEATLD
ETIASRCSLVPRSNEISRQDKIKQDETTYQDVISSHTRERERRWGYVKLK
DVKNLVPKADYWQIRLVMARCKSSQESFSSFV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR0025623'-5'_exonuclease_dom
IPR036397RNaseH_sf
IPR029491Helicase_HTH
IPR012337RNaseH-like_sf