mRNA_H-elongata_contig18962.5219.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18962.5219.1
Unique NamemRNA_H-elongata_contig18962.5219.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig18962.5219.1 vs. uniprot
Match: D7FM66_ECTSI (WRNEXO (WERNER SYNDROME-LIKE EXONUCLEASE) 3\'-5\' exonuclease/ nucleic acid binding n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM66_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 3.760e-59
Identity = 127/242 (52.48%), Postives = 150/242 (61.98%), Query Frame = 1 
Query:  355 GVAGDVCRLEKEYPQLRYNG-VKGIVCLSEMAKRKSQPERRRRGMWSLSDLCAEMLHLELAKPADVRTSDWEKRPLSVDQLFYAASDAYAGLRLWQVMREMDDTMLRQSEPNGRHAVCEINHFVGDQQGGTVDDTGVERCRAKDDETAKERARSSEAARAGTVG-GEPQSGVGATSVR-----VTGERPANI---PRLPSSKLETHRMWYGDGMSVESIAEVRCIKTSTVLGYLSDCIEAGL 1050
            GV GDV RLE+EY QLR  G V G+V LSE+AKRK  PERRRRGMWSL+DLCAE+L LEL KPA +RT  WEKRPLSVDQLFYAA+DAYAGLRLWQ M EM D +L++S+ NG              +G +       RC                AA AG  G G+ + GV A          T  R A     PRLP SKLETHR+W+ DG+SV+++AEVRC K +TV GYLS  +  GL
Sbjct:   10 GVGGDVNRLEREYDQLRAGGGVGGVVDLSEVAKRKVAPERRRRGMWSLADLCAEVLELELKKPASLRTGSWEKRPLSVDQLFYAAADAYAGLRLWQTMHEMPDLVLQRSDANGPRV-----------EGTSAAAGSPRRCDVN-------------AAAAGGEGKGQARGGVDAQPAXXGQEMATASRNAETTTRPRLPLSKLETHRLWHEDGLSVDAVAEVRCNKANTVRGYLSADLPNGL 227
[Close]
BLAST of mRNA_H-elongata_contig18962.5219.1 vs. uniprot
Match: A0A7S0A073_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0A073_9DINO)

HSP 1 Score: 101 bits (252), Expect = 1.520e-20
Identity = 86/283 (30.39%), Postives = 133/283 (47.00%), Query Frame = 1 
Query:  310 LVRVLSDPKIVLAGVGVAGDVCRLEKEYP---------------QLRYNG-----VKGIVCLSEMAKRKSQPERRRRGMWSLSDLCAEMLHLELAKPADVRTSDWEKRPLSVDQLFYAASDAYAGLRLWQVMREMDDTMLRQSEPNGRHAVCEINHFVGDQQGGTVDDTGVERCRAKDDETAKERARSSEAARAGTVGGEPQSGVGATSVRVTGERPANIPRLPSSKLETHRMWYGDGMSVESIAEVRCIKTSTVLGYLSDCIEAGLPYTWERLNI-ASDTEA 1095
            +  +L  P ++  GVG  GD  +LE++YP               Q    G      +G++ L+++A R    +   R   SL+ LC E+L   L KPADVR S+WE  PL+ +QL YAA+DA+AGLR +Q +R     ++ +     R     + H    +          E C+++                           VGA +V      P++   LP +K   +R+++ +G++ +SIAE+R I+TSTVL YL+D I AG  Y      I A+D EA
Sbjct:    2 VAALLGRPDVLKVGVGAEGDAHKLERDYPWAGAPAACEKGGSEAQCHDPGRGRFRARGVLDLNDLACRVLGGKPGSRPKASLAALCEELLGCSLPKPADVRCSNWEAVPLTEEQLGYAATDAWAGLRCFQELRARSPEVVAEVATALRKDTIPMAHSARKRP------APAEWCKSEQ--------------------------VGAVAV------PSD---LPPAKRCVYRLFFENGLAADSIAELRGIQTSTVLSYLADAITAGYAYNLADFEISAADWEA 243
[Close]
BLAST of mRNA_H-elongata_contig18962.5219.1 vs. uniprot
Match: A0A7S2H6Y7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H6Y7_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.790e-20
Identity = 78/259 (30.12%), Postives = 110/259 (42.47%), Query Frame = 1 
Query:  301 PESLVRVLSDPKIVLAGVGVAGDVCRLEKEYPQLRYNGVKGIVCLSEMAKRKSQPERRRRGMWSLSDLCAEMLHLELAKPADVRTSDWEKRPLSVDQLFYAASDAYAGLRLWQVMREMDDTMLRQSEPNGRHAVCEINHFVGDQQGGTVDDTGVERCRAKDDETAKERARSSEAARAGTVGGEPQSGVGATSVRVTGERPANIPRLPSSKLETHRMWYGDGMSVESIAEVRCIKTSTVLGYLSDCIEAGLPYTWERLNI 1077
            P  L  +LSDP++   GVG   D  +L  +        V G+V LS++A+RK    +      SL  LCA +L   L KP  +R S+WE+RPLS  QL YAA+DAYAGLRL+Q +  + D ++      G    C  NH  G                                                    +       +  L  SKL  + +++  GMS   I+  R +K +TVLGYL + I AG  Y ++R  I
Sbjct:    6 PRELACILSDPQLFKCGVGARNDATKLHNDLGV----PVHGVVELSDLARRKLVDTQM-----SLQGLCASVLKRRLEKPPHIRISNWEQRPLSGLQLSYAATDAYAGLRLYQKLEPLPDRVVTLEPSAGMINSC--NHGCG----------------------------------------------------IPVPAAHTVKSLSPSKLAVYELFHHHGMSPAEISLTRNLKITTVLGYLGEAIAAGYAYDFKRFGI 201
[Close]
BLAST of mRNA_H-elongata_contig18962.5219.1 vs. uniprot
Match: A0A6H5KKF2_9PHAE (HTH_40 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKF2_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.940e-20
Identity = 66/158 (41.77%), Postives = 86/158 (54.43%), Query Frame = 1 
Query:  643 MREMDDTMLRQSEPNGRHAVCEINHFVGDQQGGTVDDTGVERCRAKDDETAKERARSSEAARAGTVGGEPQSGVGATSVRVTGERPANIPRLPSSKLETHRMWYGDGMSVESIAEVRCIKTSTVLGYLSDCIEAGLPYTWERLNIASDTEADIVRALV 1116
            M EM D +L++S+ NG   V + +   G  +    D T    C        K +AR       G V   P  G    +           PRLP SKLETHR+W+ DG+SV+++AEVRC K +TV GYLSDCIEAGLPY W R+ I +D E +IV AL+
Sbjct:    1 MHEMPDLVLQRSDANGSR-VEDTSAAAGSPR--RCDGTAAAAC-----SEGKGQAR-------GGVDARPARGGQEMATASRNAETTTRPRLPLSKLETHRLWHEDGLSVDAVAEVRCNKANTVRGYLSDCIEAGLPYDWTRVGIDADEEEEIVTALL 143
[Close]
BLAST of mRNA_H-elongata_contig18962.5219.1 vs. uniprot
Match: A0A1Y1IE41_KLENI (Werner syndrome-like exonuclease n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IE41_KLENI)

HSP 1 Score: 94.7 bits (234), Expect = 1.090e-16
Identity = 86/283 (30.39%), Postives = 127/283 (44.88%), Query Frame = 1 
Query:  298 LPESLVRVLSDPKIVLAGVGVAGDVCRLEKEYPQLRYNGVK--GIVCLSEMAKRKSQPERRRRGMWSLSDLCAEMLHLELAKPADVRTSDWEKRPLSVDQLFYAASDAYAGLRLWQVMREMDDTMLR---QSEPNGRHAVCEINHFVGDQQGGTVDDTGVERCRAKDDETAKERARSSEAARAGTVGGEPQSGVGATSVRVTGERPANIPRLPS------SKLETHRMWYGDGMSVESIAEVRCIKTSTVLGYLSDCIEAGLPYTWERLNIASDTEADIVRAL 1113
            L  SL  +L +  +  AG G+ GD  +L +++      GV   G+  LS++A  + QP+   R  WSL+ L  E +  ++ KP   R SDWE+ PLS DQ  YAA+DAYA LRL+QV+  +     R   +  P       E+N  V     G       E                         G EP S              A IP +P       SK++ HR+ + DG+++E IA  + ++ +TV  YL +  +AGL Y W RL ++      I RA+
Sbjct:  375 LTSSLRALLDEQSVGKAGAGIYGDAQKLRRDF------GVSMGGLRDLSDLANERLQPKDGPR-KWSLTALAQEAMLQQVEKPPKQRISDWERLPLSPDQRQYAATDAYASLRLYQVLMSLPAPPPRPILRPLPQS-----ELNSLVNP---GFXXXPXXELX----------------------PGAEPTS-------------EAWIPAVPEPSYLAPSKMDVHRL-HLDGLTIEEIAVKKGVRVTTVESYLVEATQAGLAYAWHRLGVSDAVRERIERAV 606
[Close]
BLAST of mRNA_H-elongata_contig18962.5219.1 vs. uniprot
Match: A0A7S0ZVH3_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S0ZVH3_NOCSC)

HSP 1 Score: 89.7 bits (221), Expect = 2.440e-15
Identity = 81/283 (28.62%), Postives = 124/283 (43.82%), Query Frame = 1 
Query:  298 LPESLVRVLSDPKIVLAGVGVAGDVCRLEKEYPQLRYNGV-----KGIVCLSEMAKRK---SQPERRRRGMWSLSDLCAEMLHLELAKPADVRTSDWEKRPLSVDQLFYAASDAYAGLRLWQVMREMDDTMLRQSEPNGRHAVCEINHFVGDQQGGTVDDTGVERCRAKDDETAKERARSSEAARAGTVGGEPQSGVGATSVRVTGERPANIPRLPSSKLETHRMWYGDGMSVESIAEVRCIKTSTVLGYLSDCIEAGLPYTWERLNIASDTEADIVRALVTM 1122
            LP  L  +L++  ++  GVG  GD  +L  +Y     +G      + +V L+E+A R    +QP  R R   SL  LC E+L   LAK  +VR  +WE  PLS  Q+ YAA+DA+AG R ++V+  +         P    A    + F   +         V + +A  D                          G TS  V     + I  LP +K   HR++  +G++ +SIAE+R ++  TV  YL+D I AG  Y      +++D    I  A   +
Sbjct:  217 LPGPLAALLANEDVIKVGVGAEGDAHKLAADYSLKVIDGTSPFRARSVVDLNEVAWRALHGAQPGTRERK--SLRTLCFELLSQNLAKDEEVRCGNWEAVPLSQTQVDYAATDAWAGYRCFEVLHSL--------APKSLDASLATSSFGKGEPSAPC----VRKRKAPGD--------------------------GCTSEPVA--EASTILDLPPAKRLCHRLFCENGLTADSIAELRGVQAGTVRSYLADAIAAGHAYDLADFELSADDRTAITVAFAAI 457
[Close]
BLAST of mRNA_H-elongata_contig18962.5219.1 vs. uniprot
Match: A0A5J4XJR2_9CHLO (Werner Syndrome-like exonuclease-like (Fragment) n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XJR2_9CHLO)

HSP 1 Score: 83.2 bits (204), Expect = 4.240e-14
Identity = 50/119 (42.02%), Postives = 72/119 (60.50%), Query Frame = 1 
Query:  298 LPESLVRVLSDPKIVLAGVGVAGDVCRLEKEYPQLRYNGVK--GIVCLSEMAKRK--SQPERRRRGMWSLSDLCAEMLHLELAKPADVRTSDWEKRPLSVDQLFYAASDAYAGLRLWQV 642
            L  +L+++L   +I   GVG+ GD  +L +++      GV+  G+VCLSE A  +  S    R    WSL+ L  E+LHL L K  D+R S+WE  PLS +Q  YAA+DAYA ++L+QV
Sbjct:  157 LTPALIQILECEEIKKIGVGICGDAHKLHRDF------GVQCVGLVCLSEEANVRLCSSANGRMPQKWSLAGLMQELLHLTLDKGTDIRCSNWETCPLSSEQRAYAATDAYAAVKLYQV 269
[Close]
BLAST of mRNA_H-elongata_contig18962.5219.1 vs. uniprot
Match: A0A2K1JPS4_PHYPA (3'-5' exonuclease domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JPS4_PHYPA)

HSP 1 Score: 83.2 bits (204), Expect = 1.780e-13
Identity = 48/116 (41.38%), Postives = 73/116 (62.93%), Query Frame = 1 
Query:  298 LPESLVRVLSDPKIVLAGVGVAGDVCRLEKEYPQLRYNGVKGIVCLSEMAKRKSQPERRRRGMWSLSDLCAEMLHLELAKPADVRTSDWEKRPLSVDQLFYAASDAYAGLRLWQVM 645
            +P SL  +L DP I+  GVG+ GDV +L+++Y +L+   ++G+V LSE+A +K      R   WSLS L   +   ++ K  ++R  DWE  PLS  QL YAA+DA+A L L+Q++
Sbjct:  279 IPSSLYAILEDPTILKTGVGIHGDVSKLQRDY-KLK---IQGVVNLSEIANQKLG----RWQSWSLSSLSQALTCKQVEKVPNIRCGDWEACPLSPPQLQYAATDAFASLYLYQIL 386
[Close]
BLAST of mRNA_H-elongata_contig18962.5219.1 vs. uniprot
Match: A0A087H2C2_ARAAL (3'-5' exonuclease domain-containing protein n=1 Tax=Arabis alpina TaxID=50452 RepID=A0A087H2C2_ARAAL)

HSP 1 Score: 77.8 bits (190), Expect = 1.730e-12
Identity = 49/132 (37.12%), Postives = 74/132 (56.06%), Query Frame = 1 
Query:  298 LPESLVRVLSDPKIVLAGVGVAGDVCRLEKEYPQLRYNGVKGIVCLSEMAKRKSQPERRRRGMWSLSDLCAEMLHLELAKPADVRTSDWEKRPLSVDQLFYAASDAYAGLRLWQVMREMDDTMLRQSEPNGR 693
            +P+ L  ++ D  +V  GVG+ GD  +L  +Y       +KGI  LS +A +K     ++   W L+ L   ++  EL KP  +R  +WE  PLSV QL YAA+DAYA   L+QV++++ D   R +E  GR
Sbjct:  109 IPQGLKDLIEDSTLVKVGVGIDGDSVKLFNDYGV----SIKGIEDLSVLANKKLGGVWKQ---WGLASLTKTLVCKELLKPNHIRLGNWEAYPLSVIQLQYAATDAYASWNLYQVLKDLPDAT-RFAELGGR 232
[Close]
BLAST of mRNA_H-elongata_contig18962.5219.1 vs. uniprot
Match: A0A6I8Q2N7_XENTR (DNA helicase n=7 Tax=Xenopus tropicalis TaxID=8364 RepID=A0A6I8Q2N7_XENTR)

HSP 1 Score: 81.3 bits (199), Expect = 2.680e-12
Identity = 47/119 (39.50%), Postives = 72/119 (60.50%), Query Frame = 1 
Query:  301 PESLVRVLSDPKIVLAGVGVAGDVCRLEKEYPQLRYNGVKGIVCLSEMAKRKSQPERRRRGMWSLSDLCAEMLHLELAKPADVRTSDWEKRPLSVDQLFYAASDAYAGLRLWQVMREMD 657
            P+ L R+L D  +   GVG+ GD  +L  +Y +L+   +KG + LSE+A +K + + +    WSL+ L   +   +L K + +R S+W+  PLS DQ  YAASDAYAGL ++Q +  MD
Sbjct:  115 PKGLRRLLEDESVKKVGVGIEGDQWKLMSDY-ELK---LKGFIELSEVANQKLRCKEK----WSLNGLVKHLFKKQLLKDSSIRCSNWDIFPLSTDQKLYAASDAYAGLLIYQKLECMD 225
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18962.5219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM66_ECTSI3.760e-5952.48WRNEXO (WERNER SYNDROME-LIKE EXONUCLEASE) 3\'-5\' ... [more]
A0A7S0A073_9DINO1.520e-2030.39Hypothetical protein (Fragment) n=1 Tax=Pyrodinium... [more]
A0A7S2H6Y7_9STRA1.790e-2030.12Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A6H5KKF2_9PHAE1.940e-2041.77HTH_40 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A1Y1IE41_KLENI1.090e-1630.39Werner syndrome-like exonuclease n=1 Tax=Klebsormi... [more]
A0A7S0ZVH3_NOCSC2.440e-1528.62Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A5J4XJR2_9CHLO4.240e-1442.02Werner Syndrome-like exonuclease-like (Fragment) n... [more]
A0A2K1JPS4_PHYPA1.780e-1341.383'-5' exonuclease domain-containing protein n=2 Ta... [more]
A0A087H2C2_ARAAL1.730e-1237.123'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6I8Q2N7_XENTR2.680e-1239.50DNA helicase n=7 Tax=Xenopus tropicalis TaxID=8364... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18962contigH-elongata_contig18962:2459..5504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score210.7
Seed ortholog evalue1.5e-51
Seed eggNOG ortholog2880.D7FM66
Preferred nameWRN
KEGG koko:K10900,ko:K20777
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
EggNOG free text desc.3'-5' exonuclease activity
EggNOG OGsKOG4373@1,KOG4373@2759
EC3.1.11.1,3.6.4.12
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons5
Model size1636
Cds size1449
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930083.895193-UTR-H-elongata_contig18962:2458..25841622930083.895193-UTR-H-elongata_contig18962:2458..2584Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18962 2459..2584 +
1691679274.5843616-UTR-H-elongata_contig18962:2458..25841691679274.5843616-UTR-H-elongata_contig18962:2458..2584Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18962 2459..2584 +
1622930083.978213-UTR-H-elongata_contig18962:5443..55041622930083.978213-UTR-H-elongata_contig18962:5443..5504Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18962 5444..5504 +
1691679274.6641085-UTR-H-elongata_contig18962:5443..55041691679274.6641085-UTR-H-elongata_contig18962:5443..5504Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18962 5444..5504 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930083.9079967-CDS-H-elongata_contig18962:2584..29141622930083.9079967-CDS-H-elongata_contig18962:2584..2914Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18962 2585..2914 +
1691679274.6089017-CDS-H-elongata_contig18962:2584..29141691679274.6089017-CDS-H-elongata_contig18962:2584..2914Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18962 2585..2914 +
1622930083.9243212-CDS-H-elongata_contig18962:3237..34201622930083.9243212-CDS-H-elongata_contig18962:3237..3420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18962 3238..3420 +
1691679274.6176095-CDS-H-elongata_contig18962:3237..34201691679274.6176095-CDS-H-elongata_contig18962:3237..3420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18962 3238..3420 +
1622930083.9421232-CDS-H-elongata_contig18962:3774..39971622930083.9421232-CDS-H-elongata_contig18962:3774..3997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18962 3775..3997 +
1691679274.632903-CDS-H-elongata_contig18962:3774..39971691679274.632903-CDS-H-elongata_contig18962:3774..3997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18962 3775..3997 +
1622930083.9571836-CDS-H-elongata_contig18962:4402..45701622930083.9571836-CDS-H-elongata_contig18962:4402..4570Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18962 4403..4570 +
1691679274.6445248-CDS-H-elongata_contig18962:4402..45701691679274.6445248-CDS-H-elongata_contig18962:4402..4570Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18962 4403..4570 +
1622930083.9680786-CDS-H-elongata_contig18962:4898..54431622930083.9680786-CDS-H-elongata_contig18962:4898..5443Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18962 4899..5443 +
1691679274.654921-CDS-H-elongata_contig18962:4898..54431691679274.654921-CDS-H-elongata_contig18962:4898..5443Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18962 4899..5443 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18962.5219.1prot_H-elongata_contig18962.5219.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18962 2585..5443 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18962.5219.1

>prot_H-elongata_contig18962.5219.1 ID=prot_H-elongata_contig18962.5219.1|Name=mRNA_H-elongata_contig18962.5219.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=483bp
MGANTSRIQADADYLGAQGQKAFVDATRSSRQNGATKTGDGGQGALGVGV
TDGDERVLPESLVRVLSDPKIVLAGVGVAGDVCRLEKEYPQLRYNGVKGI
VCLSEMAKRKSQPERRRRGMWSLSDLCAEMLHLELAKPADVRTSDWEKRP
LSVDQLFYAASDAYAGLRLWQVMREMDDTMLRQSEPNGRHAVCEINHFVG
DQQGGTVDDTGVERCRAKDDETAKERARSSEAARAGTVGGEPQSGVGATS
VRVTGERPANIPRLPSSKLETHRMWYGDGMSVESIAEVRCIKTSTVLGYL
SDCIEAGLPYTWERLNIASDTEADIVRALVTMVGAKRSGWGGTVFAKGGV
TTDHAHLLNEATDAKDAVSGAESLSTEGEGIHRYSRVNLPVQATSEATLD
ETIASRCSLVPRSNEISRQDKIKQDETTYQDVISSHTRERERRWGYVKLK
DVKNLVPKADYWQIRLVMARCKSSQESFSSFV*
back to top

mRNA from alignment at H-elongata_contig18962:2459..5504+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18962.5219.1 ID=mRNA_H-elongata_contig18962.5219.1|Name=mRNA_H-elongata_contig18962.5219.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3046bp|location=Sequence derived from alignment at H-elongata_contig18962:2459..5504+ (Himanthalia elongata Himel1 dioecious)
CAGGCACCGCGTCGGACCGCCACCCTGCAGCTGTGCGCTCCGGACCGAGC
CGACTCCTCCAAGGAATCTTTTAATTGTTCCACTTCTTCAGTGTGGGGCA
CGACGTTTATCTTTCACCTCTGCCACATGGGCGCTAACACCTCTAGAATT
CAGGCAGATGCTGATTATCTCGGTGCGCAAGGGCAGAAGGCATTCGTTGA
TGCCACACGTAGCTCTAGACAGAACGGTGCGACGAAGACCGGCGACGGAG
GCCAGGGTGCTTTGGGGGTTGGCGTTACCGATGGGGACGAGCGCGTGTTG
CCGGAGTCTCTAGTCCGCGTTCTCTCGGATCCCAAAATTGTATTGGCCGG
GGTTGGTGTGGCGGGAGATGTGTGCCGCCTGGAAAAGGAGTACCCGCAGC
TGCGGTACAATGGTGTGAAGGGCATCGTTTGCCTTTCGGAGATGGCCAAG
CGGAAGGTCAGAGTGCTCCGTCTTCTTGTACCTGTAGCTTTGTGCTCTGA
GGTGCAGTCAGTCCGTAATATACTAATATACTATACCGTAAGATATAGAC
AATGTGCCGTAATGCCCATTTTCTCGGTGTACAGTGTTAGTAATAGGATT
AGTAATAGCAGTAGTAGAGCGATGTCACGAAAGAGAGCACGTTAATAAAA
ACTCGTGCACTGCACTCGCGTCTGGTATTATGTTCCACCATTAAACGGCC
AAGCACTTGGGTGTGGTGTGGTGTGGCATGGTTAATATCCCTGCTCCGCT
TCCGACGCCTGCCCCTGGGTCGTAAGCAGTCGCAGCCTGAAAGGAGAAGA
CGTGGAATGTGGTCCTTGTCAGACCTCTGTGCCGAAATGCTTCACCTAGA
GCTGGCCAAACCTGCCGACGTTAGAACTAGCGACTGGGAAAAGCGCCCGC
TAAGCGTGGACCAACTATTCTATGCTGCGTCGGATGCCTACGCCGGTTTG
AGGCTGTGGCAGGTACGTTTGAGGCTGTGGCAATCTGAGTCTACCTCCTT
GGGTTCTGCGTATAACCATTACCATTAATATTTAAAAGACTTTAGGCTCA
TTCTCACATTGTACCCCGATGCGTGTGTTTTCGCTATGCGATCAAAGGGG
CATTCGTGCCGTCTTGGCGATGAAAGGAGAGACTTGTGGCACTTTTTGTA
GGGCCATGGGCTCTAATGCTTTCTCTTCGCTATCCCCATGCTCTCATGCT
TTCTCAAACGGTTCGATATTGATGTTGCTGTGTTGTACAGTCTTCGAAAG
TCGCACCCCCTCAGTTTCTTCCCAGCTGACATGATGGATGATGCATGATA
TGGGATCCGTCCTCAGGTGATGAGAGAAATGGACGACACGATGCTTCGGC
AGTCGGAGCCAAATGGCCGACACGCCGTTTGCGAAATCAACCATTTCGTG
GGAGATCAGCAAGGCGGCACTGTCGATGATACCGGAGTAGAACGATGTCG
GGCAAAAGACGATGAAACTGCGAAAGAGCGGGCAAGGTCGAGCGAGGCTG
CCCGGGCAGGGACCGTCGGAGGCGAGCCCCAGAGCGGAGGTAAGGCTGTT
GTCATTCCGTTGACTGAGTATCGTGAAGGGGGAAGATGTGAGGCCCCATT
TACATACTTTAAAGTGCAAAGGCATACCATACGCCAAACGCCCCTCCTAA
TTGACAATGAAGATGGGCTGCACAGCGTGTCATGATCGGTTTGGATAATT
TAATTTTTGGCCAGTAGCTCGCCAGTACGATTGTTTTATGCGAAGCACTC
TCGTACTGATAATCTCAGGCATCAACCATCGCCAAAACTAAACTGCGCTG
GTAGTGCCCCCTCTATAGTCTATAGTATGTCCCTAAATATCTCTATAAAT
AATAAATAGTGTTGGGTTTATCGCGTCTTACTATCCAACACCCCCCTATA
TCCCTAAATATCTTTGCGCCCCTCATATATCTCTATAATTGGAGTCGGGG
CGACATCCGTACGTGTGACAGGGGAGAGGCCTGCCAACATCCCGCGGTTG
CCGTCGTCAAAGCTGGAAACACACCGAATGTGGTACGGAGATGGAATGTC
CGTGGAATCCATTGCCGAAGTTCGATGCATCAAAACGTCCACAGTGTTGG
GATATTTATCAGGTAAATACACAGACACACATATACTTGACTTAATATCA
TCGCGGCTTGTCAACACTACAATATCGGCTGTAGTTTAACAAGTCTAATC
CAGTGGCAGACGTTGCGTATACCTTATAACGTATACTGTACGTTCTCGTG
TCGTCCAGTTGTTGGTACTAAAAGGGTCGTCCAGTTGTTGTTGTTGAGTT
GATTTCAAATCATTTGGATTTGCCTATATTATGTCCAGTTCGACGATACT
ACAACTGGAACCGTTACTGGGATTTAAAAGGGGGGTTATATTTTTGTGTT
TTTATTTTCAACACGCTTTCGATCGTGTCCGTTCTAACAGATTGCATCGA
GGCAGGCTTGCCGTACACTTGGGAAAGGCTTAACATAGCCTCTGACACCG
AGGCTGACATTGTAAGAGCGTTGGTCACCATGGTTGGAGCAAAACGGTCT
GGTTGGGGTGGCACGGTCTTTGCGAAGGGCGGTGTTACCACGGATCATGC
ACACCTTCTCAACGAAGCCACAGACGCGAAGGACGCAGTTTCGGGAGCAG
AGTCGTTATCGACGGAGGGCGAAGGGATCCACAGGTACAGCAGAGTCAAC
CTACCTGTACAAGCGACTAGCGAAGCAACTTTAGACGAAACCATTGCAAG
TCGTTGTTCACTGGTGCCGCGAAGTAATGAAATTTCAAGGCAAGACAAGA
TCAAGCAAGATGAAACGACATACCAGGATGTGATCAGCTCCCACACGAGG
GAACGAGAAAGGCGATGGGGATATGTAAAGCTCAAGGACGTCAAGAACCT
TGTGCCCAAAGCAGACTACTGGCAGATCAGATTGGTGATGGCTAGGTGCA
AGTCAAGTCAAGAGAGTTTCTCTAGCTTCGTGTGACCCTGTTCAAGTTGC
GTTGTAGTGTAGTGTTGTTTCTCACATTCAGCGCATTGGTTGCCAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig18962:2459..5504+

>mRNA_H-elongata_contig18962.5219.1 ID=mRNA_H-elongata_contig18962.5219.1|Name=mRNA_H-elongata_contig18962.5219.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2898bp|location=Sequence derived from alignment at H-elongata_contig18962:2459..5504+ (Himanthalia elongata Himel1 dioecious)
ATGGGCGCTAACACCTCTAGAATTCAGGCAGATGCTGATTATCTCGGTGC
GCAAGGGCAGAAGGCATTCGTTGATGCCACACGTAGCTCTAGACAGAACG
GTGCGACGAAGACCGGCGACGGAGGCCAGGGTGCTTTGGGGGTTGGCGTT
ACCGATGGGGACGAGCGCGTGTTGCCGGAGTCTCTAGTCCGCGTTCTCTC
GGATCCCAAAATTGTATTGGCCGGGGTTGGTGTGGCGGGAGATGTGTGCC
GCCTGGAAAAGGAGTACCCGCAGCTGCGGTACAATGGTGTGAAGGGCATC
GTTTGCCTTTCGGAGATGGCCAAGCGGAAGATGGGCGCTAACACCTCTAG
AATTCAGGCAGATGCTGATTATCTCGGTGCGCAAGGGCAGAAGGCATTCG
TTGATGCCACACGTAGCTCTAGACAGAACGGTGCGACGAAGACCGGCGAC
GGAGGCCAGGGTGCTTTGGGGGTTGGCGTTACCGATGGGGACGAGCGCGT
GTTGCCGGAGTCTCTAGTCCGCGTTCTCTCGGATCCCAAAATTGTATTGG
CCGGGGTTGGTGTGGCGGGAGATGTGTGCCGCCTGGAAAAGGAGTACCCG
CAGCTGCGGTACAATGGTGTGAAGGGCATCGTTTGCCTTTCGGAGATGGC
CAAGCGGAAGTCGCAGCCTGAAAGGAGAAGACGTGGAATGTGGTCCTTGT
CAGACCTCTGTGCCGAAATGCTTCACCTAGAGCTGGCCAAACCTGCCGAC
GTTAGAACTAGCGACTGGGAAAAGCGCCCGCTAAGCGTGGACCAACTATT
CTATGCTGCGTCGGATGCCTACGCCGGTTTGAGGCTGTGGCAGTCGCAGC
CTGAAAGGAGAAGACGTGGAATGTGGTCCTTGTCAGACCTCTGTGCCGAA
ATGCTTCACCTAGAGCTGGCCAAACCTGCCGACGTTAGAACTAGCGACTG
GGAAAAGCGCCCGCTAAGCGTGGACCAACTATTCTATGCTGCGTCGGATG
CCTACGCCGGTTTGAGGCTGTGGCAGGTGATGAGAGAAATGGACGACACG
ATGCTTCGGCAGTCGGAGCCAAATGGCCGACACGCCGTTTGCGAAATCAA
CCATTTCGTGGGAGATCAGCAAGGCGGCACTGTCGATGATACCGGAGTAG
AACGATGTCGGGCAAAAGACGATGAAACTGCGAAAGAGCGGGCAAGGTCG
AGCGAGGCTGCCCGGGCAGGGACCGTCGGAGGCGAGCCCCAGAGCGGAGG
TGATGAGAGAAATGGACGACACGATGCTTCGGCAGTCGGAGCCAAATGGC
CGACACGCCGTTTGCGAAATCAACCATTTCGTGGGAGATCAGCAAGGCGG
CACTGTCGATGATACCGGAGTAGAACGATGTCGGGCAAAAGACGATGAAA
CTGCGAAAGAGCGGGCAAGGTCGAGCGAGGCTGCCCGGGCAGGGACCGTC
GGAGGCGAGCCCCAGAGCGGAGTCGGGGCGACATCCGTACGTGTGACAGG
GGAGAGGCCTGCCAACATCCCGCGGTTGCCGTCGTCAAAGCTGGAAACAC
ACCGAATGTGGTACGGAGATGGAATGTCCGTGGAATCCATTGCCGAAGTT
CGATGCATCAAAACGTCCACAGTGTTGGGATATTTATCAGTCGGGGCGAC
ATCCGTACGTGTGACAGGGGAGAGGCCTGCCAACATCCCGCGGTTGCCGT
CGTCAAAGCTGGAAACACACCGAATGTGGTACGGAGATGGAATGTCCGTG
GAATCCATTGCCGAAGTTCGATGCATCAAAACGTCCACAGTGTTGGGATA
TTTATCAGATTGCATCGAGGCAGGCTTGCCGTACACTTGGGAAAGGCTTA
ACATAGCCTCTGACACCGAGGCTGACATTGTAAGAGCGTTGGTCACCATG
GTTGGAGCAAAACGGTCTGGTTGGGGTGGCACGGTCTTTGCGAAGGGCGG
TGTTACCACGGATCATGCACACCTTCTCAACGAAGCCACAGACGCGAAGG
ACGCAGTTTCGGGAGCAGAGTCGTTATCGACGGAGGGCGAAGGGATCCAC
AGGTACAGCAGAGTCAACCTACCTGTACAAGCGACTAGCGAAGCAACTTT
AGACGAAACCATTGCAAGTCGTTGTTCACTGGTGCCGCGAAGTAATGAAA
TTTCAAGGCAAGACAAGATCAAGCAAGATGAAACGACATACCAGGATGTG
ATCAGCTCCCACACGAGGGAACGAGAAAGGCGATGGGGATATGTAAAGCT
CAAGGACGTCAAGAACCTTGTGCCCAAAGCAGACTACTGGCAGATCAGAT
TGGTGATGGCTAGGTGCAAGTCAAGTCAAGAGAGTTTCTCTAGCTTCGTG
TGAATTGCATCGAGGCAGGCTTGCCGTACACTTGGGAAAGGCTTAACATA
GCCTCTGACACCGAGGCTGACATTGTAAGAGCGTTGGTCACCATGGTTGG
AGCAAAACGGTCTGGTTGGGGTGGCACGGTCTTTGCGAAGGGCGGTGTTA
CCACGGATCATGCACACCTTCTCAACGAAGCCACAGACGCGAAGGACGCA
GTTTCGGGAGCAGAGTCGTTATCGACGGAGGGCGAAGGGATCCACAGGTA
CAGCAGAGTCAACCTACCTGTACAAGCGACTAGCGAAGCAACTTTAGACG
AAACCATTGCAAGTCGTTGTTCACTGGTGCCGCGAAGTAATGAAATTTCA
AGGCAAGACAAGATCAAGCAAGATGAAACGACATACCAGGATGTGATCAG
CTCCCACACGAGGGAACGAGAAAGGCGATGGGGATATGTAAAGCTCAAGG
ACGTCAAGAACCTTGTGCCCAAAGCAGACTACTGGCAGATCAGATTGGTG
ATGGCTAGGTGCAAGTCAAGTCAAGAGAGTTTCTCTAGCTTCGTGTGA
back to top