prot_H-elongata_contig189592.5216.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig189592.5216.1
Unique Nameprot_H-elongata_contig189592.5216.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length46
Homology
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BLAST of mRNA_H-elongata_contig189592.5216.1 vs. uniprot
Match: D7G019_ECTSI (Similar to importin 11 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G019_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 1.190e-8
Identity = 28/45 (62.22%), Postives = 35/45 (77.78%), Query Frame = 0 
Query:    2 RVLSLLGLLLEAFLRLTDSDLAEWRDYPEQYYILQDSLEPRESVR 46
            RV +LLGLLLE +L LT  +L +W D PE Y++LQDS+E RESVR
Sbjct:  471 RVEALLGLLLEGYLPLTPVELGDWEDQPEDYFLLQDSMEARESVR 515
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig189592.5216.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G019_ECTSI1.190e-862.22Similar to importin 11 n=1 Tax=Ectocarpus siliculo... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 16..46
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 12..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..15
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.699

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig189592contigH-elongata_contig189592:852..989 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig189592.5216.1mRNA_H-elongata_contig189592.5216.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig189592 852..989 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig189592.5216.1 ID=prot_H-elongata_contig189592.5216.1|Name=mRNA_H-elongata_contig189592.5216.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
NRVLSLLGLLLEAFLRLTDSDLAEWRDYPEQYYILQDSLEPRESVR
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