mRNA_H-elongata_contig189592.5216.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig189592.5216.1
Unique NamemRNA_H-elongata_contig189592.5216.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig189592.5216.1 vs. uniprot
Match: D7G019_ECTSI (Similar to importin 11 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G019_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 1.190e-8
Identity = 28/45 (62.22%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    4 RVLSLLGLLLEAFLRLTDSDLAEWRDYPEQYYILQDSLEPRESVR 138
            RV +LLGLLLE +L LT  +L +W D PE Y++LQDS+E RESVR
Sbjct:  471 RVEALLGLLLEGYLPLTPVELGDWEDQPEDYFLLQDSMEARESVR 515
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig189592.5216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G019_ECTSI1.190e-862.22Similar to importin 11 n=1 Tax=Ectocarpus siliculo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig189592contigH-elongata_contig189592:852..989 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930083.5791914-CDS-H-elongata_contig189592:851..9891622930083.5791914-CDS-H-elongata_contig189592:851..989Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189592 852..989 -
1691679274.448021-CDS-H-elongata_contig189592:851..9891691679274.448021-CDS-H-elongata_contig189592:851..989Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189592 852..989 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig189592.5216.1prot_H-elongata_contig189592.5216.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig189592 852..989 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig189592.5216.1

>prot_H-elongata_contig189592.5216.1 ID=prot_H-elongata_contig189592.5216.1|Name=mRNA_H-elongata_contig189592.5216.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
NRVLSLLGLLLEAFLRLTDSDLAEWRDYPEQYYILQDSLEPRESVR
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mRNA from alignment at H-elongata_contig189592:852..989-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig189592.5216.1 ID=mRNA_H-elongata_contig189592.5216.1|Name=mRNA_H-elongata_contig189592.5216.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig189592:852..989- (Himanthalia elongata Himel1 dioecious)
AACAGGGTACTGAGTCTGCTGGGGCTCCTGCTGGAGGCGTTTCTACGTCT
GACTGACTCTGACTTGGCGGAGTGGAGAGACTATCCCGAACAGTACTATA
TCTTGCAGGACAGCCTCGAACCTCGTGAGAGTGTACGG
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Coding sequence (CDS) from alignment at H-elongata_contig189592:852..989-

>mRNA_H-elongata_contig189592.5216.1 ID=mRNA_H-elongata_contig189592.5216.1|Name=mRNA_H-elongata_contig189592.5216.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig189592:852..989- (Himanthalia elongata Himel1 dioecious)
AACAGGGTACTGAGTCTGCTGGGGCTCCTGCTGGAGGCGTTTCTACGTCT
GACTGACTCTGACTTGGCGGAGTGGAGAGACTATCCCGAACAGTACTATA
TCTTGCAGGACAGCCTCGAACCTCGTGAGAGTGTACGGAACAGGGTACTG
AGTCTGCTGGGGCTCCTGCTGGAGGCGTTTCTACGTCTGACTGACTCTGA
CTTGGCGGAGTGGAGAGACTATCCCGAACAGTACTATATCTTGCAGGACA
GCCTCGAACCTCGTGAGAGTGTACGG
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