prot_H-elongata_contig187168.5101.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig187168.5101.1
Unique Nameprot_H-elongata_contig187168.5101.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length81
Homology
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BLAST of mRNA_H-elongata_contig187168.5101.1 vs. uniprot
Match: D8LMC3_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMC3_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 4.120e-24
Identity = 52/78 (66.67%), Postives = 62/78 (79.49%), Query Frame = 0 
Query:    1 MFALGGAYEAKHLPLPAVLGAIAGLLVARYIAPALVWGD--IVGEAEGILPDSNAKLWNRRREKLTNDYVARIAAQAQ 76
            M  LGGAYE+K++PLPAVLGAIAGLL ARY+APALVWG   + G   GI+PDS AK W  RRE LT+ YV+R+AA+AQ
Sbjct:  202 MLPLGGAYESKNIPLPAVLGAIAGLLAARYLAPALVWGGGPLEGGVAGIIPDSKAKSWAVRREALTHQYVSRLAAEAQ 279
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig187168.5101.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMC3_ECTSI4.120e-2466.67Cellulose synthase (UDP-forming), family GT2 n=2 T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 33..81
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..32
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availableTMHMMTMhelixcoord: 15..37

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig187168contigH-elongata_contig187168:602..1047 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig187168.5101.1mRNA_H-elongata_contig187168.5101.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig187168 602..1047 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig187168.5101.1 ID=prot_H-elongata_contig187168.5101.1|Name=mRNA_H-elongata_contig187168.5101.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
MFALGGAYEAKHLPLPAVLGAIAGLLVARYIAPALVWGDIVGEAEGILPD
SNAKLWNRRREKLTNDYVARIAAQAQGRVNL
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