mRNA_H-elongata_contig187168.5101.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig187168.5101.1
Unique NamemRNA_H-elongata_contig187168.5101.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig187168.5101.1 vs. uniprot
Match: D8LMC3_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMC3_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 4.120e-24
Identity = 52/78 (66.67%), Postives = 62/78 (79.49%), Query Frame = 1 
Query:    1 MFALGGAYEAKHLPLPAVLGAIAGLLVARYIAPALVWGD--IVGEAEGILPDSNAKLWNRRREKLTNDYVARIAAQAQ 228
            M  LGGAYE+K++PLPAVLGAIAGLL ARY+APALVWG   + G   GI+PDS AK W  RRE LT+ YV+R+AA+AQ
Sbjct:  202 MLPLGGAYESKNIPLPAVLGAIAGLLAARYLAPALVWGGGPLEGGVAGIIPDSKAKSWAVRREALTHQYVSRLAAEAQ 279
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig187168.5101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMC3_ECTSI4.120e-2466.67Cellulose synthase (UDP-forming), family GT2 n=2 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig187168contigH-elongata_contig187168:602..1047 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size245
Cds size243
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930069.889236-CDS-H-elongata_contig187168:601..6591622930069.889236-CDS-H-elongata_contig187168:601..659Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187168 602..659 +
1691679269.2880497-CDS-H-elongata_contig187168:601..6591691679269.2880497-CDS-H-elongata_contig187168:601..659Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187168 602..659 +
1622930069.9063852-CDS-H-elongata_contig187168:862..10471622930069.9063852-CDS-H-elongata_contig187168:862..1047Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187168 863..1047 +
1691679269.2962785-CDS-H-elongata_contig187168:862..10471691679269.2962785-CDS-H-elongata_contig187168:862..1047Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187168 863..1047 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig187168.5101.1prot_H-elongata_contig187168.5101.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig187168 602..1047 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig187168.5101.1

>prot_H-elongata_contig187168.5101.1 ID=prot_H-elongata_contig187168.5101.1|Name=mRNA_H-elongata_contig187168.5101.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
MFALGGAYEAKHLPLPAVLGAIAGLLVARYIAPALVWGDIVGEAEGILPD
SNAKLWNRRREKLTNDYVARIAAQAQGRVNL
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mRNA from alignment at H-elongata_contig187168:602..1047+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig187168.5101.1 ID=mRNA_H-elongata_contig187168.5101.1|Name=mRNA_H-elongata_contig187168.5101.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=446bp|location=Sequence derived from alignment at H-elongata_contig187168:602..1047+ (Himanthalia elongata Himel1 dioecious)
ATGTTCGCCCTTGGGGGCGCCTACGAGGCCAAGCATCTCCCCCTTCCGGC
TGTGCTGGGTGAGGGATGCTTCTAAGGGGGAATATGAGGGGGTATACCAA
CTGCATTTTGTGTGTTATTATATATAGGAGACCTTTGGAGGGTAAAGTGG
GGGAGGCTAAGGGATATCGACCGATGTAATGCTTTCTAGAGGTAAAAAGT
ATACAGTATATATAGACTTACCTATTTTATCTTGCTTGTCTTCTTTGCTT
CTACCTCGTAGGCGCAATCGCTGGCCTTCTTGTCGCCCGCTATATCGCCC
CAGCCCTTGTGTGGGGCGACATCGTGGGAGAAGCGGAAGGCATCCTTCCG
GATTCGAACGCAAAGTTGTGGAATAGGAGGCGCGAAAAGCTCACCAACGA
CTACGTCGCGAGGATTGCAGCCCAGGCACAGGGTCGGGTAAATCTT
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Coding sequence (CDS) from alignment at H-elongata_contig187168:602..1047+

>mRNA_H-elongata_contig187168.5101.1 ID=mRNA_H-elongata_contig187168.5101.1|Name=mRNA_H-elongata_contig187168.5101.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig187168:602..1047+ (Himanthalia elongata Himel1 dioecious)
ATGTTCGCCCTTGGGGGCGCCTACGAGGCCAAGCATCTCCCCCTTCCGGC
TGTGCTGGATGTTCGCCCTTGGGGGCGCCTACGAGGCCAAGCATCTCCCC
CTTCCGGCTGTGCTGGGCGCAATCGCTGGCCTTCTTGTCGCCCGCTATAT
CGCCCCAGCCCTTGTGTGGGGCGACATCGTGGGAGAAGCGGAAGGCATCC
TTCCGGATTCGAACGCAAAGTTGTGGAATAGGAGGCGCGAAAAGCTCACC
AACGACTACGTCGCGAGGATTGCAGCCCAGGCACAGGGTCGGGTAAATCT
TGCGCAATCGCTGGCCTTCTTGTCGCCCGCTATATCGCCCCAGCCCTTGT
GTGGGGCGACATCGTGGGAGAAGCGGAAGGCATCCTTCCGGATTCGAACG
CAAAGTTGTGGAATAGGAGGCGCGAAAAGCTCACCAACGACTACGTCGCG
AGGATTGCAGCCCAGGCACAGGGTCGGGTAAATCTT
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