prot_H-elongata_contig184906.4990.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig184906.4990.1
Unique Nameprot_H-elongata_contig184906.4990.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length84
Homology
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BLAST of mRNA_H-elongata_contig184906.4990.1 vs. uniprot
Match: D7FZX0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZX0_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 4.260e-28
Identity = 72/82 (87.80%), Postives = 75/82 (91.46%), Query Frame = 0 
Query:    1 MQRDLGQVKADVMQEEKFDIAKVHDEITELEKRVFQRRETDEVRFTQXXXXXXXXXXXVILQYGIGFFGSIIALGLAVARIA 82
            MQRDL QVKADV  EEKFD AK+HDEITELEKRVFQRRETDEVR   XXXXXXXXXXXVILQYGIGFFGS+IA+GLAVARIA
Sbjct:  120 MQRDLMQVKADVRSEEKFDFAKLHDEITELEKRVFQRRETDEVRXXXXXXXXXXXXXXVILQYGIGFFGSVIAMGLAVARIA 201
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BLAST of mRNA_H-elongata_contig184906.4990.1 vs. uniprot
Match: A0A6H5KWP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWP7_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 5.850e-28
Identity = 72/82 (87.80%), Postives = 75/82 (91.46%), Query Frame = 0 
Query:    1 MQRDLGQVKADVMQEEKFDIAKVHDEITELEKRVFQRRETDEVRFTQXXXXXXXXXXXVILQYGIGFFGSIIALGLAVARIA 82
            MQRDL QVKADV  EEKFD AK+HDEITELEKRVFQRRETDEVR   XXXXXXXXXXXVILQYGIGFFGS+IA+GLAVARIA
Sbjct:  134 MQRDLMQVKADVRSEEKFDFAKLHDEITELEKRVFQRRETDEVRXXXXXXXXXXXXXXVILQYGIGFFGSVIAMGLAVARIA 215
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig184906.4990.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZX0_ECTSI4.260e-2887.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWP7_9PHAE5.850e-2887.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 13..33
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 83..83
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 60..82
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..59
NoneNo IPR availableTMHMMTMhelixcoord: 59..81

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig184906contigH-elongata_contig184906:93..1048 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig184906.4990.1mRNA_H-elongata_contig184906.4990.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig184906 93..1078 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig184906.4990.1 ID=prot_H-elongata_contig184906.4990.1|Name=mRNA_H-elongata_contig184906.4990.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
MQRDLGQVKADVMQEEKFDIAKVHDEITELEKRVFQRRETDEVRFTQVHT
EIAALERRVILQYGIGFFGSIIALGLAVARIAM*
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