prot_H-elongata_contig183746.4946.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig183746.4946.1
Unique Nameprot_H-elongata_contig183746.4946.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length87
Homology
BLAST of mRNA_H-elongata_contig183746.4946.1 vs. uniprot
Match: T1IUK0_STRMM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1IUK0_STRMM)

HSP 1 Score: 72.0 bits (175), Expect = 3.700e-13
Identity = 38/81 (46.91%), Postives = 53/81 (65.43%), Query Frame = 0
Query:    1 MDGQIARGVWQVVERSKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVTQGFRQVKGIHYEESSSLTPAQASIRMVLSIIAAL 81
            M+ Q  RG WQ+V RS    V+G+R +FK+KID  G   K+K RLV QGFR  KG  +EES +L    ++IRM++++ A L
Sbjct:   49 MEAQKQRGTWQLVSRSTNHKVIGSRWIFKQKIDLTGSSPKFKVRLVAQGFRITKGADFEESFALVVQPSTIRMLIAMAAKL 129          
BLAST of mRNA_H-elongata_contig183746.4946.1 vs. uniprot
Match: A0A540MBJ7_MALBA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540MBJ7_MALBA)

HSP 1 Score: 70.5 bits (171), Expect = 1.610e-12
Identity = 32/80 (40.00%), Postives = 53/80 (66.25%), Query Frame = 0
Query:    7 RGVWQVVERSKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVTQGFRQVKGIHYEESSSLTPAQASIRMVLSIIAALGWEAR 86
            +G W++V     + V+G++ V+K K D+DG++ +YK RLV  G+ Q +G+ Y+E+ SL     ++R+VLS+ A  GWE R
Sbjct:  165 QGTWELVPPPVDRNVIGSKWVYKIKKDQDGKVSRYKARLVAHGYSQEQGLDYDETFSLVVRHTTVRLVLSLAAMKGWELR 244          
BLAST of mRNA_H-elongata_contig183746.4946.1 vs. uniprot
Match: A0A540NMU0_MALBA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540NMU0_MALBA)

HSP 1 Score: 67.8 bits (164), Expect = 3.490e-12
Identity = 31/80 (38.75%), Postives = 52/80 (65.00%), Query Frame = 0
Query:    7 RGVWQVVERSKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVTQGFRQVKGIHYEESSSLTPAQASIRMVLSIIAALGWEAR 86
            +G W++V   + + V+G++ V+K K D+DG++ +YK RLV QGF Q  G+ Y+E+ S      ++R+VLS+ A   W+ R
Sbjct:   79 QGTWELVPVPQNRNVIGSKWVYKLKKDQDGKVSRYKARLVAQGFSQEHGLEYDETFSPVVRHTTVRLVLSLAAMNKWDLR 158          
BLAST of mRNA_H-elongata_contig183746.4946.1 vs. uniprot
Match: T1IMU7_STRMM (Integrase catalytic domain-containing protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1IMU7_STRMM)

HSP 1 Score: 69.3 bits (168), Expect = 7.600e-12
Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = 0
Query:    5 IARGVWQVVERSKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVTQGFRQVKGIHYEESSSLTPAQASIRMVLSIIA 79
            I RG W+++ +     V+G + ++KRK D  G I KYK RLV QGF+Q+KGI YEES S      +IR++L++ A
Sbjct:  484 IKRGTWELISKPPMARVIGCKWIYKRKTDPAGHIIKYKARLVAQGFKQIKGIDYEESYSPVVRLTTIRVILALAA 558          
BLAST of mRNA_H-elongata_contig183746.4946.1 vs. uniprot
Match: A0A5N5FUF0_9ROSA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5FUF0_9ROSA)

HSP 1 Score: 68.6 bits (166), Expect = 1.450e-11
Identity = 32/80 (40.00%), Postives = 52/80 (65.00%), Query Frame = 0
Query:    7 RGVWQVVERSKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVTQGFRQVKGIHYEESSSLTPAQASIRMVLSIIAALGWEAR 86
            +G W++V   + + V+G++ V+K K D+DG++ +YK RLV QGF Q  G+ YEE+ S      ++R+VLS+ A   W+ R
Sbjct:  642 QGTWELVPVPQNRNVIGSKWVYKLKKDQDGKVSRYKARLVAQGFSQEHGLDYEETFSPVVRHTTVRLVLSLAAMNKWDLR 721          
BLAST of mRNA_H-elongata_contig183746.4946.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 68.2 bits (165), Expect = 2.010e-11
Identity = 34/77 (44.16%), Postives = 51/77 (66.23%), Query Frame = 0
Query:    8 GVWQVVERSKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVTQGFRQVKGIHYEESSSLTPAQASIRMVLSIIAALGWE 84
            GV++ V R + + ++G++ VFK K   DG++EKYK RLV QGF QV+GI Y E+ +      SIR++L++ A   WE
Sbjct: 1025 GVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWE 1101          
BLAST of mRNA_H-elongata_contig183746.4946.1 vs. uniprot
Match: A0A075B0V5_ROZAC (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075B0V5_ROZAC)

HSP 1 Score: 67.8 bits (164), Expect = 2.660e-11
Identity = 33/76 (43.42%), Postives = 52/76 (68.42%), Query Frame = 0
Query:    5 IARGVWQVVERSKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVTQGFRQVKGIHYEESSSLTPAQASIRMVLSIIAA 80
            ++ G W+++E    +  +G++ VFK K ++ G +EKYK RLV QGF+QVKG+ YEE+ S      SIR++L+I +A
Sbjct:  126 MSNGTWELMELPPDRKAIGSKWVFKTKYNERGEVEKYKARLVAQGFKQVKGVDYEETFSPVAKLNSIRIILAIASA 201          
BLAST of mRNA_H-elongata_contig183746.4946.1 vs. uniprot
Match: UPI00073A0C34 (uncharacterized protein LOC107063294 n=1 Tax=Solanum tuberosum TaxID=4113 RepID=UPI00073A0C34)

HSP 1 Score: 67.8 bits (164), Expect = 2.670e-11
Identity = 32/75 (42.67%), Postives = 50/75 (66.67%), Query Frame = 0
Query:   10 WQVVERSKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVTQGFRQVKGIHYEESSSLTPAQASIRMVLSIIAALGWE 84
            W++V+  K K V+G R V+K K   DG I+K+K RLV +G+ Q +G+ ++E+ SL     ++R V+S+ AA GWE
Sbjct:  412 WEIVDLPKGKKVIGCRWVYKIKYKADGSIDKFKARLVAKGYNQREGLDFQETFSLVVKMVTVRTVISMAAAKGWE 486          
BLAST of mRNA_H-elongata_contig183746.4946.1 vs. uniprot
Match: A0A5N5FXC4_9ROSA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5FXC4_9ROSA)

HSP 1 Score: 67.4 bits (163), Expect = 3.680e-11
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = 0
Query:    7 RGVWQVVERSKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVTQGFRQVKGIHYEESSSLTPAQASIRMVLSIIAALGWEAR 86
            +G W++V     + V+G++ V+K K D+DG++ +YK RLV QGF Q  G+ YEE+ S      ++R+VLS+ A   W+ R
Sbjct:  606 QGTWELVPVPPNRNVIGSKWVYKIKKDQDGKVSRYKARLVAQGFSQEHGLDYEETFSPVVRHTTVRLVLSLAAMNKWDLR 685          
BLAST of mRNA_H-elongata_contig183746.4946.1 vs. uniprot
Match: A0A4S4K4Q2_9APHY (Uncharacterized protein n=2 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4K4Q2_9APHY)

HSP 1 Score: 67.0 bits (162), Expect = 5.110e-11
Identity = 38/84 (45.24%), Postives = 50/84 (59.52%), Query Frame = 0
Query:    1 MDGQIARGVWQVVERSKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVTQGFRQVKGIHYEESSSLTPAQASIRMVLSIIAALGWE 84
            ++  I    W VVER     V+G++ V + K D  G I+KYK RLV QGF QV G+ Y E+ +     ASIR+VL+I A  GWE
Sbjct:  986 LESLIRNDTWTVVERPLGVNVVGSKWVLRIKKDATGAIDKYKARLVAQGFTQVYGVDYFETFAPVAKIASIRLVLAIAARNGWE 1069          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig183746.4946.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
T1IUK0_STRMM3.700e-1346.91Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A540MBJ7_MALBA1.610e-1240.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A540NMU0_MALBA3.490e-1238.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
T1IMU7_STRMM7.600e-1245.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A5N5FUF0_9ROSA1.450e-1140.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0C2WN23_AMAMK2.010e-1144.16Integrase catalytic domain-containing protein (Fra... [more]
A0A075B0V5_ROZAC2.660e-1143.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI00073A0C342.670e-1142.67uncharacterized protein LOC107063294 n=1 Tax=Solan... [more]
A0A5N5FXC4_9ROSA3.680e-1140.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4S4K4Q2_9APHY5.110e-1145.24Uncharacterized protein n=2 Tax=Hermanssonia centr... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 9..83
e-value: 4.5E-14
score: 52.7
NoneNo IPR availablePANTHERPTHR11439:SF265coord: 10..83
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 10..83

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig183746contigH-elongata_contig183746:257..517 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig183746.4946.1mRNA_H-elongata_contig183746.4946.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig183746 182..1246 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig183746.4946.1 ID=prot_H-elongata_contig183746.4946.1|Name=mRNA_H-elongata_contig183746.4946.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
MDGQIARGVWQVVERSKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVTQGF
RQVKGIHYEESSSLTPAQASIRMVLSIIAALGWEAR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like