prot_H-elongata_contig182270.4885.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig182270.4885.1
Unique Nameprot_H-elongata_contig182270.4885.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length57
Homology
BLAST of mRNA_H-elongata_contig182270.4885.1 vs. uniprot
Match: A0A1Y1MJE9_PHOPY (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1MJE9_PHOPY)

HSP 1 Score: 62.0 bits (149), Expect = 8.500e-10
Identity = 27/56 (48.21%), Postives = 40/56 (71.43%), Query Frame = 0
Query:    1 MRTTNRFSSRRTRHVDVKHHIVRDTVESVVVRIHYVKSREQHADVLTKALDINTFE 56
            +R  +   +RRT+H+D+KHH +RD VES  + I Y+ S EQ AD+LTK+L ++ FE
Sbjct:  922 IRMASTLETRRTKHIDIKHHYIRDCVESERIHIQYIPSNEQQADILTKSLSLSKFE 977          
BLAST of mRNA_H-elongata_contig182270.4885.1 vs. uniprot
Match: A0A0A9YPH4_LYGHE (Copia protein n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9YPH4_LYGHE)

HSP 1 Score: 60.5 bits (145), Expect = 2.750e-9
Identity = 25/52 (48.08%), Postives = 41/52 (78.85%), Query Frame = 0
Query:    5 NRFSSRRTRHVDVKHHIVRDTVESVVVRIHYVKSREQHADVLTKALDINTFE 56
            NR +S+R +H+D+KHH +R+ V+  V++++YV + EQ+AD+LTK LD  +FE
Sbjct:  283 NRENSKRIKHIDIKHHFIREKVDEGVIKLNYVSTSEQNADILTKGLDKQSFE 334          
BLAST of mRNA_H-elongata_contig182270.4885.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 2.970e-9
Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 0
Query:    1 MRTTNRFSSRRTRHVDVKHHIVRDTVESVVVRIHYVKSREQHADVLTKALDINTFE 56
            +R  N  SS R++H+DV+HH +R+  E  V+ + +V S+EQHAD+LTKAL  N FE
Sbjct:  908 LRPKNPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRNLFE 963          
BLAST of mRNA_H-elongata_contig182270.4885.1 vs. uniprot
Match: A0A6H5JRE7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE7_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.010e-8
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 0
Query:    5 NRFSSRRTRHVDVKHHIVRDTVESVVVRIHYVKSREQHADVLTKALDINTFE 56
            N  SS R++H+DV+HH +R+  E  V+ + +V S+EQHAD+LTKAL  N FE
Sbjct:  323 NPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRNLFE 374          
BLAST of mRNA_H-elongata_contig182270.4885.1 vs. uniprot
Match: A0A6H5JP36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP36_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.040e-8
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 0
Query:    5 NRFSSRRTRHVDVKHHIVRDTVESVVVRIHYVKSREQHADVLTKALDINTFE 56
            N  SS R++H+DV+HH +R+  E  V+ + +V S+EQHAD+LTKAL  N FE
Sbjct:  490 NPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRNLFE 541          
BLAST of mRNA_H-elongata_contig182270.4885.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.040e-8
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 0
Query:    5 NRFSSRRTRHVDVKHHIVRDTVESVVVRIHYVKSREQHADVLTKALDINTFE 56
            N  SS R++H+DV+HH +R+  E  V+ + +V S+EQHAD+LTKAL  N FE
Sbjct: 1218 NPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRNLFE 1269          
BLAST of mRNA_H-elongata_contig182270.4885.1 vs. uniprot
Match: A0A392RX51_9FABA (Peroxidase 4-like (Fragment) n=2 Tax=Trifolium medium TaxID=97028 RepID=A0A392RX51_9FABA)

HSP 1 Score: 55.5 bits (132), Expect = 1.110e-8
Identity = 23/46 (50.00%), Postives = 34/46 (73.91%), Query Frame = 0
Query:   11 RTRHVDVKHHIVRDTVESVVVRIHYVKSREQHADVLTKALDINTFE 56
            RT+H+D++HH +RD VE  +V + +V + EQ +D+ TKALD N FE
Sbjct:   36 RTKHIDIRHHFIRDFVEEKIVTLEHVATEEQLSDIFTKALDANQFE 81          
BLAST of mRNA_H-elongata_contig182270.4885.1 vs. uniprot
Match: A0A251TG59_HELAN (Uncharacterized protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251TG59_HELAN)

HSP 1 Score: 55.1 bits (131), Expect = 1.210e-8
Identity = 23/46 (50.00%), Postives = 36/46 (78.26%), Query Frame = 0
Query:   12 TRHVDVKHHIVRDTVESVVVRIHYVKSREQHADVLTKALDINTFET 57
            T+++D++HH VRD  E  ++ +H+V +++Q ADVLTKALD  TFE+
Sbjct:   20 TKYIDIRHHFVRDCYEKGLISLHHVPTKDQLADVLTKALDTTTFES 65          
BLAST of mRNA_H-elongata_contig182270.4885.1 vs. uniprot
Match: A0A392MTL3_9FABA (Putative gag-pol polyprotein n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392MTL3_9FABA)

HSP 1 Score: 58.2 bits (139), Expect = 1.680e-8
Identity = 25/46 (54.35%), Postives = 35/46 (76.09%), Query Frame = 0
Query:   11 RTRHVDVKHHIVRDTVESVVVRIHYVKSREQHADVLTKALDINTFE 56
            RT+H+D++HH +RD VE  VV + ++ + EQ AD+LTKALD N FE
Sbjct:  244 RTKHIDIRHHYIRDLVEDKVVTLEHIATEEQLADILTKALDANRFE 289          
BLAST of mRNA_H-elongata_contig182270.4885.1 vs. uniprot
Match: A0A2K3MMX0_TRIPR (Retrotransposon-related protein (Fragment) n=2 Tax=Trifolium TaxID=3898 RepID=A0A2K3MMX0_TRIPR)

HSP 1 Score: 58.2 bits (139), Expect = 1.950e-8
Identity = 25/46 (54.35%), Postives = 35/46 (76.09%), Query Frame = 0
Query:   11 RTRHVDVKHHIVRDTVESVVVRIHYVKSREQHADVLTKALDINTFE 56
            RT+H+D++HH +RD VE  VV + ++ + EQ AD+LTKALD N FE
Sbjct: 1244 RTKHIDIRHHYIRDLVEDKVVTLEHIATEEQLADILTKALDANMFE 1289          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig182270.4885.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y1MJE9_PHOPY8.500e-1048.21Integrase catalytic domain-containing protein (Fra... [more]
A0A0A9YPH4_LYGHE2.750e-948.08Copia protein n=1 Tax=Lygus hesperus TaxID=30085 R... [more]
A0A6H5J594_9PHAE2.970e-950.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JRE7_9PHAE1.010e-851.92Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JP36_9PHAE1.040e-851.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH25_9PHAE1.040e-851.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A392RX51_9FABA1.110e-850.00Peroxidase 4-like (Fragment) n=2 Tax=Trifolium med... [more]
A0A251TG59_HELAN1.210e-850.00Uncharacterized protein n=1 Tax=Helianthus annuus ... [more]
A0A392MTL3_9FABA1.680e-854.35Putative gag-pol polyprotein n=1 Tax=Trifolium med... [more]
A0A2K3MMX0_TRIPR1.950e-854.35Retrotransposon-related protein (Fragment) n=2 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig182270contigH-elongata_contig182270:538..708 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig182270.4885.1mRNA_H-elongata_contig182270.4885.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig182270 538..726 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig182270.4885.1 ID=prot_H-elongata_contig182270.4885.1|Name=mRNA_H-elongata_contig182270.4885.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
MRTTNRFSSRRTRHVDVKHHIVRDTVESVVVRIHYVKSREQHADVLTKAL
DINTFET
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