prot_H-elongata_contig181298.4847.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig181298.4847.1
Unique Nameprot_H-elongata_contig181298.4847.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length48
Homology
BLAST of mRNA_H-elongata_contig181298.4847.1 vs. uniprot
Match: D7G2P6_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2P6_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 8.190e-19
Identity = 38/42 (90.48%), Postives = 42/42 (100.00%), Query Frame = 0
Query:    3 YAFIEYDNEDDMRLAYKRGDGRKIDGRRVLVDVERGRTVRDW 44
            YAF+EY+NEDDMR+AYKRGDGRKIDGRRVLVDVERGRTVR+W
Sbjct:  163 YAFVEYENEDDMRVAYKRGDGRKIDGRRVLVDVERGRTVRNW 204          
BLAST of mRNA_H-elongata_contig181298.4847.1 vs. uniprot
Match: A0A7S0NZK7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NZK7_9EUKA)

HSP 1 Score: 79.0 bits (193), Expect = 9.470e-17
Identity = 36/47 (76.60%), Postives = 42/47 (89.36%), Query Frame = 0
Query:    1 KRYAFIEYDNEDDMRLAYKRGDGRKIDGRRVLVDVERGRTVRDWKVR 47
            K YAFIEY+ E DM+ AYK+GDG+KIDGRRVLVDVERGRTVR+W+ R
Sbjct:  143 KGYAFIEYEQERDMKTAYKQGDGKKIDGRRVLVDVERGRTVRNWRPR 189          
BLAST of mRNA_H-elongata_contig181298.4847.1 vs. uniprot
Match: A0A7S0PVJ7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PVJ7_9EUKA)

HSP 1 Score: 77.8 bits (190), Expect = 3.600e-16
Identity = 35/45 (77.78%), Postives = 41/45 (91.11%), Query Frame = 0
Query:    3 YAFIEYDNEDDMRLAYKRGDGRKIDGRRVLVDVERGRTVRDWKVR 47
            YAFIEY+ E DM+ AYK+GDG+KIDGRRVLVDVERGRTVR+W+ R
Sbjct:  159 YAFIEYEQERDMKTAYKQGDGKKIDGRRVLVDVERGRTVRNWRPR 203          
BLAST of mRNA_H-elongata_contig181298.4847.1 vs. uniprot
Match: F0XZV6_AURAN (RRM domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZV6_AURAN)

HSP 1 Score: 77.0 bits (188), Expect = 4.300e-16
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 0
Query:    3 YAFIEYDNEDDMRLAYKRGDGRKIDGRRVLVDVERGRTVRDWKVR 47
            YAF+E++ E DMR AYKR DGRKIDGRRVLVDVERGRTVR+W+ R
Sbjct:  155 YAFVEFERESDMRDAYKRADGRKIDGRRVLVDVERGRTVRNWRPR 199          
BLAST of mRNA_H-elongata_contig181298.4847.1 vs. uniprot
Match: A0A7S3AB59_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AB59_9EUKA)

HSP 1 Score: 77.4 bits (189), Expect = 5.120e-16
Identity = 34/45 (75.56%), Postives = 42/45 (93.33%), Query Frame = 0
Query:    3 YAFIEYDNEDDMRLAYKRGDGRKIDGRRVLVDVERGRTVRDWKVR 47
            YAF+EY++E DM+ AYK+GDG+KIDGRRVLVDVERGRTVR+W+ R
Sbjct:  145 YAFLEYEHERDMKTAYKQGDGKKIDGRRVLVDVERGRTVRNWRPR 189          
BLAST of mRNA_H-elongata_contig181298.4847.1 vs. uniprot
Match: F0YP89_AURAN (RRM domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YP89_AURAN)

HSP 1 Score: 77.0 bits (188), Expect = 5.440e-16
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 0
Query:    3 YAFIEYDNEDDMRLAYKRGDGRKIDGRRVLVDVERGRTVRDWKVR 47
            YAF+E++ E DMR AYKR DGRKIDGRRVLVDVERGRTVR+W+ R
Sbjct:  101 YAFVEFERESDMRDAYKRADGRKIDGRRVLVDVERGRTVRNWRPR 145          
BLAST of mRNA_H-elongata_contig181298.4847.1 vs. uniprot
Match: A0A2D4BHZ3_PYTIN (RRM domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BHZ3_PYTIN)

HSP 1 Score: 78.2 bits (191), Expect = 6.860e-16
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 0
Query:    3 YAFIEYDNEDDMRLAYKRGDGRKIDGRRVLVDVERGRTVRDWKVR 47
            YAFIEY+ E DM+ AYK+ DG+KIDGRRV+VDVERGRTVRDWK R
Sbjct:  160 YAFIEYERESDMKAAYKQADGKKIDGRRVVVDVERGRTVRDWKPR 204          
BLAST of mRNA_H-elongata_contig181298.4847.1 vs. uniprot
Match: A0A7S2Y0A0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0A0_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.030e-15
Identity = 36/42 (85.71%), Postives = 37/42 (88.10%), Query Frame = 0
Query:    3 YAFIEYDNEDDMRLAYKRGDGRKIDGRRVLVDVERGRTVRDW 44
            YAFIEYD E DMR+AYKR DG KIDGRRVLVDVERGRTVR W
Sbjct:  158 YAFIEYDRESDMRMAYKRADGCKIDGRRVLVDVERGRTVRGW 199          
BLAST of mRNA_H-elongata_contig181298.4847.1 vs. uniprot
Match: A0A818CE15_9BILA (Hypothetical protein n=2 Tax=Bdelloidea TaxID=44578 RepID=A0A818CE15_9BILA)

HSP 1 Score: 75.1 bits (183), Expect = 1.230e-15
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 0
Query:    3 YAFIEYDNEDDMRLAYKRGDGRKIDGRRVLVDVERGRTVRDWKVR 47
            YAFIEY+ E DM  AYKR DGRKIDGRRV+VDVERGRTV+ W+ R
Sbjct:   20 YAFIEYEKESDMHAAYKRADGRKIDGRRVVVDVERGRTVKGWRPR 64          
BLAST of mRNA_H-elongata_contig181298.4847.1 vs. uniprot
Match: A0A287DG89_ICTTR (RRM domain-containing protein n=6 Tax=Rodentia TaxID=9989 RepID=A0A287DG89_ICTTR)

HSP 1 Score: 72.4 bits (176), Expect = 1.480e-15
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 0
Query:    3 YAFIEYDNEDDMRLAYKRGDGRKIDGRRVLVDVERGRTVRDWKVR 47
            YAFIEY++E DM  AYK  DG+KIDGRRVLVDVERGRTV+ W+ R
Sbjct:   15 YAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPR 59          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig181298.4847.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2P6_ECTSI8.190e-1990.48RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S0NZK7_9EUKA9.470e-1776.60Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A7S0PVJ7_9EUKA3.600e-1677.78Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
F0XZV6_AURAN4.300e-1677.78RRM domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A7S3AB59_9EUKA5.120e-1675.56Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
F0YP89_AURAN5.440e-1677.78RRM domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A2D4BHZ3_PYTIN6.860e-1677.78RRM domain-containing protein n=1 Tax=Pythium insi... [more]
A0A7S2Y0A0_9STRA1.030e-1585.71Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A818CE15_9BILA1.230e-1575.56Hypothetical protein n=2 Tax=Bdelloidea TaxID=4457... [more]
A0A287DG89_ICTTR1.480e-1573.33RRM domain-containing protein n=6 Tax=Rodentia Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 1..31
e-value: 9.9E-6
score: 25.3
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..48
e-value: 5.8E-10
score: 41.4
IPR040252U1 small nuclear ribonucleoprotein 70kDaPANTHERPTHR13952:SF5U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDAcoord: 1..47
NoneNo IPR availablePANTHERPTHR13952U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDcoord: 1..47
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 1..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig181298contigH-elongata_contig181298:845..988 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig181298.4847.1mRNA_H-elongata_contig181298.4847.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig181298 845..988 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig181298.4847.1 ID=prot_H-elongata_contig181298.4847.1|Name=mRNA_H-elongata_contig181298.4847.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
KRYAFIEYDNEDDMRLAYKRGDGRKIDGRRVLVDVERGRTVRDWKVRW
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR040252SNRNP70
IPR035979RBD_domain_sf