mRNA_H-elongata_contig181298.4847.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig181298.4847.1
Unique NamemRNA_H-elongata_contig181298.4847.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig181298.4847.1 vs. uniprot
Match: D7G2P6_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2P6_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 8.190e-19
Identity = 38/42 (90.48%), Postives = 42/42 (100.00%), Query Frame = 1 
Query:    7 YAFIEYDNEDDMRLAYKRGDGRKIDGRRVLVDVERGRTVRDW 132
            YAF+EY+NEDDMR+AYKRGDGRKIDGRRVLVDVERGRTVR+W
Sbjct:  163 YAFVEYENEDDMRVAYKRGDGRKIDGRRVLVDVERGRTVRNW 204
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BLAST of mRNA_H-elongata_contig181298.4847.1 vs. uniprot
Match: A0A7S0NZK7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NZK7_9EUKA)

HSP 1 Score: 79.0 bits (193), Expect = 9.470e-17
Identity = 36/47 (76.60%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    1 KRYAFIEYDNEDDMRLAYKRGDGRKIDGRRVLVDVERGRTVRDWKVR 141
            K YAFIEY+ E DM+ AYK+GDG+KIDGRRVLVDVERGRTVR+W+ R
Sbjct:  143 KGYAFIEYEQERDMKTAYKQGDGKKIDGRRVLVDVERGRTVRNWRPR 189
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BLAST of mRNA_H-elongata_contig181298.4847.1 vs. uniprot
Match: A0A7S0PVJ7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PVJ7_9EUKA)

HSP 1 Score: 77.8 bits (190), Expect = 3.600e-16
Identity = 35/45 (77.78%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    7 YAFIEYDNEDDMRLAYKRGDGRKIDGRRVLVDVERGRTVRDWKVR 141
            YAFIEY+ E DM+ AYK+GDG+KIDGRRVLVDVERGRTVR+W+ R
Sbjct:  159 YAFIEYEQERDMKTAYKQGDGKKIDGRRVLVDVERGRTVRNWRPR 203
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BLAST of mRNA_H-elongata_contig181298.4847.1 vs. uniprot
Match: F0XZV6_AURAN (RRM domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZV6_AURAN)

HSP 1 Score: 77.0 bits (188), Expect = 4.300e-16
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    7 YAFIEYDNEDDMRLAYKRGDGRKIDGRRVLVDVERGRTVRDWKVR 141
            YAF+E++ E DMR AYKR DGRKIDGRRVLVDVERGRTVR+W+ R
Sbjct:  155 YAFVEFERESDMRDAYKRADGRKIDGRRVLVDVERGRTVRNWRPR 199
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BLAST of mRNA_H-elongata_contig181298.4847.1 vs. uniprot
Match: A0A7S3AB59_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AB59_9EUKA)

HSP 1 Score: 77.4 bits (189), Expect = 5.120e-16
Identity = 34/45 (75.56%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    7 YAFIEYDNEDDMRLAYKRGDGRKIDGRRVLVDVERGRTVRDWKVR 141
            YAF+EY++E DM+ AYK+GDG+KIDGRRVLVDVERGRTVR+W+ R
Sbjct:  145 YAFLEYEHERDMKTAYKQGDGKKIDGRRVLVDVERGRTVRNWRPR 189
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BLAST of mRNA_H-elongata_contig181298.4847.1 vs. uniprot
Match: F0YP89_AURAN (RRM domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YP89_AURAN)

HSP 1 Score: 77.0 bits (188), Expect = 5.440e-16
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    7 YAFIEYDNEDDMRLAYKRGDGRKIDGRRVLVDVERGRTVRDWKVR 141
            YAF+E++ E DMR AYKR DGRKIDGRRVLVDVERGRTVR+W+ R
Sbjct:  101 YAFVEFERESDMRDAYKRADGRKIDGRRVLVDVERGRTVRNWRPR 145
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BLAST of mRNA_H-elongata_contig181298.4847.1 vs. uniprot
Match: A0A2D4BHZ3_PYTIN (RRM domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BHZ3_PYTIN)

HSP 1 Score: 78.2 bits (191), Expect = 6.860e-16
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    7 YAFIEYDNEDDMRLAYKRGDGRKIDGRRVLVDVERGRTVRDWKVR 141
            YAFIEY+ E DM+ AYK+ DG+KIDGRRV+VDVERGRTVRDWK R
Sbjct:  160 YAFIEYERESDMKAAYKQADGKKIDGRRVVVDVERGRTVRDWKPR 204
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BLAST of mRNA_H-elongata_contig181298.4847.1 vs. uniprot
Match: A0A7S2Y0A0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0A0_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.030e-15
Identity = 36/42 (85.71%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    7 YAFIEYDNEDDMRLAYKRGDGRKIDGRRVLVDVERGRTVRDW 132
            YAFIEYD E DMR+AYKR DG KIDGRRVLVDVERGRTVR W
Sbjct:  158 YAFIEYDRESDMRMAYKRADGCKIDGRRVLVDVERGRTVRGW 199
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BLAST of mRNA_H-elongata_contig181298.4847.1 vs. uniprot
Match: A0A818CE15_9BILA (Hypothetical protein n=2 Tax=Bdelloidea TaxID=44578 RepID=A0A818CE15_9BILA)

HSP 1 Score: 75.1 bits (183), Expect = 1.230e-15
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    7 YAFIEYDNEDDMRLAYKRGDGRKIDGRRVLVDVERGRTVRDWKVR 141
            YAFIEY+ E DM  AYKR DGRKIDGRRV+VDVERGRTV+ W+ R
Sbjct:   20 YAFIEYEKESDMHAAYKRADGRKIDGRRVVVDVERGRTVKGWRPR 64
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BLAST of mRNA_H-elongata_contig181298.4847.1 vs. uniprot
Match: A0A287DG89_ICTTR (RRM domain-containing protein n=6 Tax=Rodentia TaxID=9989 RepID=A0A287DG89_ICTTR)

HSP 1 Score: 72.4 bits (176), Expect = 1.480e-15
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    7 YAFIEYDNEDDMRLAYKRGDGRKIDGRRVLVDVERGRTVRDWKVR 141
            YAFIEY++E DM  AYK  DG+KIDGRRVLVDVERGRTV+ W+ R
Sbjct:   15 YAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPR 59
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig181298.4847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2P6_ECTSI8.190e-1990.48RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S0NZK7_9EUKA9.470e-1776.60Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A7S0PVJ7_9EUKA3.600e-1677.78Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
F0XZV6_AURAN4.300e-1677.78RRM domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A7S3AB59_9EUKA5.120e-1675.56Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
F0YP89_AURAN5.440e-1677.78RRM domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A2D4BHZ3_PYTIN6.860e-1677.78RRM domain-containing protein n=1 Tax=Pythium insi... [more]
A0A7S2Y0A0_9STRA1.030e-1585.71Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A818CE15_9BILA1.230e-1575.56Hypothetical protein n=2 Tax=Bdelloidea TaxID=4457... [more]
A0A287DG89_ICTTR1.480e-1573.33RRM domain-containing protein n=6 Tax=Rodentia Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig181298contigH-elongata_contig181298:845..988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue5.7e-15
Seed eggNOG ortholog2880.D7G2P6
KEGG koko:K11093
KEGG Pathwayko03040,map03040
KEGG ModuleM00351
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005847,GO:0005849,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006379,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016604,GO:0018130,GO:0019438,GO:0031123,GO:0031124,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071920,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0097659,GO:0098787,GO:0098789,GO:1901360,GO:1901362,GO:1901363,GO:1901576
EggNOG free text desc.snRNA binding
EggNOG OGsCOG0724@1,KOG0113@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size144
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930044.9556296-CDS-H-elongata_contig181298:844..9881622930044.9556296-CDS-H-elongata_contig181298:844..988Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181298 845..988 +
1691679259.3964198-CDS-H-elongata_contig181298:844..9881691679259.3964198-CDS-H-elongata_contig181298:844..988Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181298 845..988 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig181298.4847.1prot_H-elongata_contig181298.4847.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig181298 845..988 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig181298.4847.1

>prot_H-elongata_contig181298.4847.1 ID=prot_H-elongata_contig181298.4847.1|Name=mRNA_H-elongata_contig181298.4847.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
KRYAFIEYDNEDDMRLAYKRGDGRKIDGRRVLVDVERGRTVRDWKVRW
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mRNA from alignment at H-elongata_contig181298:845..988+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig181298.4847.1 ID=mRNA_H-elongata_contig181298.4847.1|Name=mRNA_H-elongata_contig181298.4847.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=144bp|location=Sequence derived from alignment at H-elongata_contig181298:845..988+ (Himanthalia elongata Himel1 dioecious)
AAAAGGTACGCCTTCATCGAGTACGACAATGAGGACGACATGCGCCTTGC
CTACAAGCGTGGGGACGGGCGGAAGATCGACGGCCGACGCGTTCTTGTAG
ATGTCGAGCGCGGACGGACCGTGCGCGACTGGAAGGTGAGGTGG
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Coding sequence (CDS) from alignment at H-elongata_contig181298:845..988+

>mRNA_H-elongata_contig181298.4847.1 ID=mRNA_H-elongata_contig181298.4847.1|Name=mRNA_H-elongata_contig181298.4847.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig181298:845..988+ (Himanthalia elongata Himel1 dioecious)
AAAAGGTACGCCTTCATCGAGTACGACAATGAGGACGACATGCGCCTTGC
CTACAAGCGTGGGGACGGGCGGAAGATCGACGGCCGACGCGTTCTTGTAG
ATGTCGAGCGCGGACGGACCGTGCGCGACTGGAAGGTGAGGTGGAAAAGG
TACGCCTTCATCGAGTACGACAATGAGGACGACATGCGCCTTGCCTACAA
GCGTGGGGACGGGCGGAAGATCGACGGCCGACGCGTTCTTGTAGATGTCG
AGCGCGGACGGACCGTGCGCGACTGGAAGGTGAGGTGG
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