prot_H-elongata_contig175696.4584.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig175696.4584.1
Unique Nameprot_H-elongata_contig175696.4584.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length42
Homology
BLAST of mRNA_H-elongata_contig175696.4584.1 vs. uniprot
Match: D7G280_ECTSI (TAFII55_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G280_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 3.240e-17
Identity = 38/42 (90.48%), Postives = 39/42 (92.86%), Query Frame = 0
Query:    1 MDDKVYPARLVDLPCVLETQKTLDKTTFFKSGDVGQMLIVYK 42
            MD K YPARLVD+PCVLETQKTLDK TFFKSGDVGQMLIVYK
Sbjct:   49 MDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYK 90          
BLAST of mRNA_H-elongata_contig175696.4584.1 vs. uniprot
Match: A0A4D9CRB1_9STRA (TAFII55_N domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CRB1_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 5.970e-10
Identity = 26/39 (66.67%), Postives = 33/39 (84.62%), Query Frame = 0
Query:    4 KVYPARLVDLPCVLETQKTLDKTTFFKSGDVGQMLIVYK 42
            +V+PARLV+LPCV+E  KT+D  T FKS DVGQM++VYK
Sbjct:   85 RVFPARLVNLPCVVEVHKTVDYVTLFKSADVGQMVVVYK 123          
BLAST of mRNA_H-elongata_contig175696.4584.1 vs. uniprot
Match: A0A835YLK6_9STRA (TAFII55 protein conserved region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLK6_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 7.260e-10
Identity = 27/42 (64.29%), Postives = 34/42 (80.95%), Query Frame = 0
Query:    1 MDDKVYPARLVDLPCVLETQKTLDKTTFFKSGDVGQMLIVYK 42
            +D + YPARLV+LPC LET KT D T ++KS D+GQMLIVY+
Sbjct:   52 IDGERYPARLVNLPCNLETLKTTDNTMYYKSADIGQMLIVYE 93          
BLAST of mRNA_H-elongata_contig175696.4584.1 vs. uniprot
Match: A0A5J4WMP9_9EUKA (Putative ATP-dependent RNA helicase eIF4A n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4WMP9_9EUKA)

HSP 1 Score: 61.2 bits (147), Expect = 8.150e-10
Identity = 23/42 (54.76%), Postives = 36/42 (85.71%), Query Frame = 0
Query:    1 MDDKVYPARLVDLPCVLETQKTLDKTTFFKSGDVGQMLIVYK 42
            MD +++PA LV+LPC++E+QKT DK TF+K+ D+ QMLI+++
Sbjct:  305 MDGEIFPATLVNLPCIIESQKTYDKKTFYKTADISQMLIIHE 346          
BLAST of mRNA_H-elongata_contig175696.4584.1 vs. uniprot
Match: A0A2V3IJD7_9FLOR (Transcription initiation factor TFIID subunit 7 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJD7_9FLOR)

HSP 1 Score: 59.7 bits (143), Expect = 2.750e-9
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 0
Query:    1 MDDKVYPARLVDLPCVLETQKTLDKTTFFKSGDVGQMLIV 40
            +D K YPA L+DLPC++ET KT DK TF+KSGD+ Q+L+V
Sbjct:   54 IDGKHYPASLMDLPCIVETHKTADKRTFYKSGDLHQVLVV 93          
BLAST of mRNA_H-elongata_contig175696.4584.1 vs. uniprot
Match: A0A152A3L8_9MYCE (Transcription initiation factor TFIID subunit n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A3L8_9MYCE)

HSP 1 Score: 58.9 bits (141), Expect = 5.320e-9
Identity = 21/41 (51.22%), Postives = 35/41 (85.37%), Query Frame = 0
Query:    1 MDDKVYPARLVDLPCVLETQKTLDKTTFFKSGDVGQMLIVY 41
            + D+++ + LVDLPC++E+QKT+DK  FFK+ D+GQM++V+
Sbjct:   69 LGDEIFESTLVDLPCIVESQKTIDKVNFFKTSDIGQMILVH 109          
BLAST of mRNA_H-elongata_contig175696.4584.1 vs. uniprot
Match: A0A7S4HTG7_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HTG7_9EUKA)

HSP 1 Score: 58.9 bits (141), Expect = 5.320e-9
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 0
Query:    1 MDDKVYPARLVDLPCVLETQKTLDKTTFFKSGDVGQMLIV 40
            +D +  P RL DLPCV+ET KT+D+  FFK+GDVGQM+IV
Sbjct:   68 VDGEKLPMRLADLPCVIETHKTVDRVGFFKTGDVGQMIIV 107          
BLAST of mRNA_H-elongata_contig175696.4584.1 vs. uniprot
Match: D3B1R5_POLPP (Transcription initiation factor TFIID subunit n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B1R5_POLPP)

HSP 1 Score: 57.8 bits (138), Expect = 1.360e-8
Identity = 23/40 (57.50%), Postives = 33/40 (82.50%), Query Frame = 0
Query:    3 DKVYPARLVDLPCVLETQKTLDKTTFFKSGDVGQMLIVYK 42
            D+ + A L DLPC+LE+ KTLDKTT++K+ D+GQM+ VY+
Sbjct:  109 DQEFDASLFDLPCILESHKTLDKTTYYKTADIGQMIEVYE 148          
BLAST of mRNA_H-elongata_contig175696.4584.1 vs. uniprot
Match: A0A1D1UUJ5_RAMVA (TAFII55_N domain-containing protein n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1UUJ5_RAMVA)

HSP 1 Score: 56.2 bits (134), Expect = 3.850e-8
Identity = 24/40 (60.00%), Postives = 33/40 (82.50%), Query Frame = 0
Query:    1 MDDKVYPARLVDLPCVLETQKTLDKTTFFKSGDVGQMLIV 40
            +D   + A+LVDLPCV+E+ KT+DK TF+K+GDV QML+V
Sbjct:   74 VDSMEFSAKLVDLPCVVESLKTIDKKTFYKTGDVCQMLVV 113          
BLAST of mRNA_H-elongata_contig175696.4584.1 vs. uniprot
Match: A0A7S2RHU4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RHU4_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 4.270e-8
Identity = 23/42 (54.76%), Postives = 32/42 (76.19%), Query Frame = 0
Query:    1 MDDKVYPARLVDLPCVLETQKTLDKTTFFKSGDVGQMLIVYK 42
            + D +YP  LV+LPC +E+ KT D+ T FKS D+GQMLIV++
Sbjct:   66 LGDMIYPGLLVNLPCPVESHKTFDRITTFKSADIGQMLIVFE 107          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig175696.4584.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G280_ECTSI3.240e-1790.48TAFII55_N domain-containing protein n=2 Tax=Ectoca... [more]
A0A4D9CRB1_9STRA5.970e-1066.67TAFII55_N domain-containing protein n=2 Tax=Monodo... [more]
A0A835YLK6_9STRA7.260e-1064.29TAFII55 protein conserved region-domain-containing... [more]
A0A5J4WMP9_9EUKA8.150e-1054.76Putative ATP-dependent RNA helicase eIF4A n=1 Tax=... [more]
A0A2V3IJD7_9FLOR2.750e-962.50Transcription initiation factor TFIID subunit 7 n=... [more]
A0A152A3L8_9MYCE5.320e-951.22Transcription initiation factor TFIID subunit n=1 ... [more]
A0A7S4HTG7_9EUKA5.320e-962.50Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
D3B1R5_POLPP1.360e-857.50Transcription initiation factor TFIID subunit n=1 ... [more]
A0A1D1UUJ5_RAMVA3.850e-860.00TAFII55_N domain-containing protein n=1 Tax=Ramazz... [more]
A0A7S2RHU4_9STRA4.270e-854.76Hypothetical protein (Fragment) n=2 Tax=Rhizochrom... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006751TAFII55 protein, conserved regionPFAMPF04658TAFII55_Ncoord: 2..40
e-value: 4.6E-15
score: 55.7
IPR037817Transcription initiation factor TFIID subunit 7PANTHERPTHR12228TRANSCRIPTION INITIATION FACTOR TFIID 55 KD SUBUNIT-RELATEDcoord: 2..42

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig175696contigH-elongata_contig175696:1114..1239 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig175696.4584.1mRNA_H-elongata_contig175696.4584.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig175696 1114..1245 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig175696.4584.1 ID=prot_H-elongata_contig175696.4584.1|Name=mRNA_H-elongata_contig175696.4584.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
MDDKVYPARLVDLPCVLETQKTLDKTTFFKSGDVGQMLIVYK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006751TAFII55_prot_cons_reg
IPR037817TAF7