mRNA_H-elongata_contig175696.4584.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig175696.4584.1
Unique NamemRNA_H-elongata_contig175696.4584.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig175696.4584.1 vs. uniprot
Match: D7G280_ECTSI (TAFII55_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G280_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 9.750e-19
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:    1 FTMDDKVYPARLVDLPCVLETQKTLDKTTFFKSGDVGQMLIVYK 132
            FTMD K YPARLVD+PCVLETQKTLDK TFFKSGDVGQMLIVYK
Sbjct:   47 FTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYK 90
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BLAST of mRNA_H-elongata_contig175696.4584.1 vs. uniprot
Match: A0A835YLK6_9STRA (TAFII55 protein conserved region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLK6_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.340e-11
Identity = 29/44 (65.91%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    1 FTMDDKVYPARLVDLPCVLETQKTLDKTTFFKSGDVGQMLIVYK 132
            FT+D + YPARLV+LPC LET KT D T ++KS D+GQMLIVY+
Sbjct:   50 FTIDGERYPARLVNLPCNLETLKTTDNTMYYKSADIGQMLIVYE 93
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BLAST of mRNA_H-elongata_contig175696.4584.1 vs. uniprot
Match: A0A2V3IJD7_9FLOR (Transcription initiation factor TFIID subunit 7 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJD7_9FLOR)

HSP 1 Score: 63.9 bits (154), Expect = 9.270e-11
Identity = 27/42 (64.29%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    1 FTMDDKVYPARLVDLPCVLETQKTLDKTTFFKSGDVGQMLIV 126
            FT+D K YPA L+DLPC++ET KT DK TF+KSGD+ Q+L+V
Sbjct:   52 FTIDGKHYPASLMDLPCIVETHKTADKRTFYKSGDLHQVLVV 93
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BLAST of mRNA_H-elongata_contig175696.4584.1 vs. uniprot
Match: A0A4D9CRB1_9STRA (TAFII55_N domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CRB1_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 6.530e-10
Identity = 26/39 (66.67%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:   16 KVYPARLVDLPCVLETQKTLDKTTFFKSGDVGQMLIVYK 132
            +V+PARLV+LPCV+E  KT+D  T FKS DVGQM++VYK
Sbjct:   85 RVFPARLVNLPCVVEVHKTVDYVTLFKSADVGQMVVVYK 123
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BLAST of mRNA_H-elongata_contig175696.4584.1 vs. uniprot
Match: A0A5J4WMP9_9EUKA (Putative ATP-dependent RNA helicase eIF4A n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4WMP9_9EUKA)

HSP 1 Score: 61.2 bits (147), Expect = 8.920e-10
Identity = 23/42 (54.76%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    7 MDDKVYPARLVDLPCVLETQKTLDKTTFFKSGDVGQMLIVYK 132
            MD +++PA LV+LPC++E+QKT DK TF+K+ D+ QMLI+++
Sbjct:  305 MDGEIFPATLVNLPCIIESQKTYDKKTFYKTADISQMLIIHE 346
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BLAST of mRNA_H-elongata_contig175696.4584.1 vs. uniprot
Match: A0A152A3L8_9MYCE (Transcription initiation factor TFIID subunit n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A3L8_9MYCE)

HSP 1 Score: 60.8 bits (146), Expect = 1.220e-9
Identity = 22/43 (51.16%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 FTMDDKVYPARLVDLPCVLETQKTLDKTTFFKSGDVGQMLIVY 129
            F + D+++ + LVDLPC++E+QKT+DK  FFK+ D+GQM++V+
Sbjct:   67 FKLGDEIFESTLVDLPCIVESQKTIDKVNFFKTSDIGQMILVH 109
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BLAST of mRNA_H-elongata_contig175696.4584.1 vs. uniprot
Match: UPI0006449B83 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006449B83)

HSP 1 Score: 60.5 bits (145), Expect = 1.670e-9
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 FTMDDKVYPARLVDLPCVLETQKTLDKTTFFKSGDVGQMLIVY 129
            FT+ D+ Y   L+DLPCVLE+ KTLDKTT++K+ D+GQ + VY
Sbjct:  112 FTIGDQEYEGALLDLPCVLESHKTLDKTTYYKTADIGQKIQVY 154
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BLAST of mRNA_H-elongata_contig175696.4584.1 vs. uniprot
Match: D3B1R5_POLPP (Transcription initiation factor TFIID subunit n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B1R5_POLPP)

HSP 1 Score: 59.7 bits (143), Expect = 3.110e-9
Identity = 24/44 (54.55%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 FTMDDKVYPARLVDLPCVLETQKTLDKTTFFKSGDVGQMLIVYK 132
            F + D+ + A L DLPC+LE+ KTLDKTT++K+ D+GQM+ VY+
Sbjct:  105 FKIGDQEFDASLFDLPCILESHKTLDKTTYYKTADIGQMIEVYE 148
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BLAST of mRNA_H-elongata_contig175696.4584.1 vs. uniprot
Match: A0A7S4HTG7_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HTG7_9EUKA)

HSP 1 Score: 58.9 bits (141), Expect = 5.820e-9
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    7 MDDKVYPARLVDLPCVLETQKTLDKTTFFKSGDVGQMLIV 126
            +D +  P RL DLPCV+ET KT+D+  FFK+GDVGQM+IV
Sbjct:   68 VDGEKLPMRLADLPCVIETHKTVDRVGFFKTGDVGQMIIV 107
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BLAST of mRNA_H-elongata_contig175696.4584.1 vs. uniprot
Match: A0A7S2RHU4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RHU4_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 9.430e-9
Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 FTMDDKVYPARLVDLPCVLETQKTLDKTTFFKSGDVGQMLIVYK 132
            F + D +YP  LV+LPC +E+ KT D+ T FKS D+GQMLIV++
Sbjct:   64 FQLGDMIYPGLLVNLPCPVESHKTFDRITTFKSADIGQMLIVFE 107
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig175696.4584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G280_ECTSI9.750e-1990.91TAFII55_N domain-containing protein n=2 Tax=Ectoca... [more]
A0A835YLK6_9STRA2.340e-1165.91TAFII55 protein conserved region-domain-containing... [more]
A0A2V3IJD7_9FLOR9.270e-1164.29Transcription initiation factor TFIID subunit 7 n=... [more]
A0A4D9CRB1_9STRA6.530e-1066.67TAFII55_N domain-containing protein n=2 Tax=Monodo... [more]
A0A5J4WMP9_9EUKA8.920e-1054.76Putative ATP-dependent RNA helicase eIF4A n=1 Tax=... [more]
A0A152A3L8_9MYCE1.220e-951.16Transcription initiation factor TFIID subunit n=1 ... [more]
UPI0006449B831.670e-958.14hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
D3B1R5_POLPP3.110e-954.55Transcription initiation factor TFIID subunit n=1 ... [more]
A0A7S4HTG7_9EUKA5.820e-962.50Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A7S2RHU4_9STRA9.430e-954.55Hypothetical protein (Fragment) n=2 Tax=Rhizochrom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig175696contigH-elongata_contig175696:1114..1245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue9.3e-14
Seed eggNOG ortholog2880.D7G280
Preferred nameTAF7
KEGG koko:K03132,ko:K19721
KEGG Pathwayko03022,ko04974,map03022,map04974
GOsGO:0000003,GO:0000122,GO:0000123,GO:0000296,GO:0000428,GO:0001067,GO:0001932,GO:0001933,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0003712,GO:0003713,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005737,GO:0005794,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006469,GO:0006725,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006928,GO:0007154,GO:0007165,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009755,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010639,GO:0010646,GO:0012505,GO:0014070,GO:0015696,GO:0015846,GO:0015893,GO:0016043,GO:0016070,GO:0016591,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019899,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0030154,GO:0030234,GO:0030317,GO:0030518,GO:0030520,GO:0030522,GO:0030880,GO:0031056,GO:0031057,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032870,GO:0032991,GO:0033043,GO:0033044,GO:0033276,GO:0033673,GO:0033993,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0035034,GO:0035035,GO:0035065,GO:0035067,GO:0035097,GO:0035257,GO:0040011,GO:0042221,GO:0042325,GO:0042326,GO:0042493,GO:0042809,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043401,GO:0043549,GO:0043933,GO:0044085,GO:0044087,GO:0044092,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044665,GO:0044703,GO:0044798,GO:0045859,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045936,GO:0045944,GO:0046483,GO:0046966,GO:0046982,GO:0046983,GO:0048232,GO:0048468,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048583,GO:0048609,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051123,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051338,GO:0051348,GO:0051427,GO:0051674,GO:0051704,GO:0051716,GO:0055029,GO:0060255,GO:0060260,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0070461,GO:0070887,GO:0070897,GO:0071310,GO:0071339,GO:0071383,GO:0071396,GO:0071407,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0097722,GO:0098772,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901796,GO:1901983,GO:1901984,GO:1902275,GO:1902493,GO:1902494,GO:1902531,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1905268,GO:1990234,GO:2000112,GO:2000113,GO:2000142,GO:2000756,GO:2000757,GO:2001141,GO:2001251
EggNOG free text desc.chromosome segregation
EggNOG OGsCOG5414@1,KOG4011@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko03021,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size126
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930018.6372654-CDS-H-elongata_contig175696:1113..12391622930018.6372654-CDS-H-elongata_contig175696:1113..1239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig175696 1114..1239 -
1691679248.227954-CDS-H-elongata_contig175696:1113..12391691679248.227954-CDS-H-elongata_contig175696:1113..1239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig175696 1114..1239 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930018.6539638-UTR-H-elongata_contig175696:1239..12451622930018.6539638-UTR-H-elongata_contig175696:1239..1245Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig175696 1240..1245 -
1691679248.2498856-UTR-H-elongata_contig175696:1239..12451691679248.2498856-UTR-H-elongata_contig175696:1239..1245Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig175696 1240..1245 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig175696.4584.1prot_H-elongata_contig175696.4584.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig175696 1114..1239 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig175696.4584.1

>prot_H-elongata_contig175696.4584.1 ID=prot_H-elongata_contig175696.4584.1|Name=mRNA_H-elongata_contig175696.4584.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
MDDKVYPARLVDLPCVLETQKTLDKTTFFKSGDVGQMLIVYK
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mRNA from alignment at H-elongata_contig175696:1114..1245-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig175696.4584.1 ID=mRNA_H-elongata_contig175696.4584.1|Name=mRNA_H-elongata_contig175696.4584.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=132bp|location=Sequence derived from alignment at H-elongata_contig175696:1114..1245- (Himanthalia elongata Himel1 dioecious)
TTTACAATGGACGACAAGGTGTACCCAGCCCGCCTGGTCGACCTCCCGTG
CGTGCTGGAGACCCAAAAAACTTTGGACAAGACTACGTTCTTCAAGAGCG
GAGACGTCGGTCAGATGCTCATTGTCTACAAG
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Coding sequence (CDS) from alignment at H-elongata_contig175696:1114..1245-

>mRNA_H-elongata_contig175696.4584.1 ID=mRNA_H-elongata_contig175696.4584.1|Name=mRNA_H-elongata_contig175696.4584.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig175696:1114..1245- (Himanthalia elongata Himel1 dioecious)
ATGGACGACAAGGTGTACCCAGCCCGCCTGGTCGACCTCCCGTGCGTGCT
GGAGACCCAAAAAACTTTGGACAAGACTACGTTCTTCAAGAGCGGAGACG
TCGGTCAGATGCTCATTGTCTACAAGATGGACGACAAGGTGTACCCAGCC
CGCCTGGTCGACCTCCCGTGCGTGCTGGAGACCCAAAAAACTTTGGACAA
GACTACGTTCTTCAAGAGCGGAGACGTCGGTCAGATGCTCATTGTCTACA
AG
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