prot_H-elongata_contig172438.4459.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig172438.4459.1
Unique Nameprot_H-elongata_contig172438.4459.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length228
Homology
BLAST of mRNA_H-elongata_contig172438.4459.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 8.040e-38
Identity = 89/249 (35.74%), Postives = 141/249 (56.63%), Query Frame = 0
Query:    1 MLSATTAAKDGELRNFDAEQTFLKADINEELYREISEKYQKFPGAVGQLNKAIYGL---------------------QGKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTIDRFAAELGQKSKLKDMGDVRYYMGCHITRNRKARKLKIDQHLYVESMVEKFDAEKVRKIPATSGVPTLSKTDEPRNPEKEEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKKNGPAHKKAAMNIMQY 228
            +L+A    ++  LR+FD +Q F+++D++E+++  + E   +  G + +LNK++YGL                     Q  AD CVFR + +G   V +VVHVDDI +  +++   D+F  +L     +K++GD+R+Y GC   R+  A  LKI Q  Y E +  +F  E  ++IP   G+  LS+ D     + EE+  +P+RE +G+LMW AT TRPDIA+AVRAVAR+C       H +A + I+ Y
Sbjct:   23 LLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEE-RCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFD-----QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPK-EIHWRAGLGILGY 263          
BLAST of mRNA_H-elongata_contig172438.4459.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 2.310e-37
Identity = 89/249 (35.74%), Postives = 138/249 (55.42%), Query Frame = 0
Query:    1 MLSATTAAKDGELRNFDAEQTFLKADINEELYREISEKYQKFPGAVGQLNKAIYGL---------------------QGKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTIDRFAAELGQKSKLKDMGDVRYYMGCHITRNRKARKLKIDQHLYVESMVEKFDAEKVRKIPATSGVPTLSKTDEPRNPEKEEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKKNGPAHKKAAMNIMQY 228
            ML+A     + +L +FD EQ F+++++ E++Y  + +      G + +L K++YGL                     Q  AD CVFR + DG   +++VVHVDDI A   ++   D+F A+L +   +K++G++R+Y GC   RN++  +L I Q  + + +  ++     R +P +SGV  LS  D       E   +FP+RE VG+LMW AT TRPDIA+AVRAVAR+C       H  AAM+I+ Y
Sbjct:   47 MLAALACELNLDLCHFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGV-KLSDFD-----ADEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPK-LVHWNAAMDILGY 287          
BLAST of mRNA_H-elongata_contig172438.4459.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 6.920e-37
Identity = 89/249 (35.74%), Postives = 141/249 (56.63%), Query Frame = 0
Query:    1 MLSATTAAKDGELRNFDAEQTFLKADINEELYREISEKYQKFPGAVGQLNKAIYGL---------------------QGKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTIDRFAAELGQKSKLKDMGDVRYYMGCHITRNRKARKLKIDQHLYVESMVEKFDAEKVRKIPATSGVPTLSKTDEPRNPEKEEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKKNGPAHKKAAMNIMQY 228
            +L+A    ++  LR+FD +Q F+++D++E+++  + E   +  G + +LNK++YGL                     Q  AD CVFR + +G   V +VVHVDDI +  +++   D+F  +L     +K++GD+R+Y GC   R+  A  LKI Q  Y E +  +F  E  ++IP   G+  LS+ D     + EE+  +P+RE +G+LMW AT TRPDIA+AVRAVAR+C       H +A + I+ Y
Sbjct:  197 LLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEE-RCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFD-----QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPK-EIHWRAGLGILGY 437          
BLAST of mRNA_H-elongata_contig172438.4459.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 1.960e-36
Identity = 89/249 (35.74%), Postives = 141/249 (56.63%), Query Frame = 0
Query:    1 MLSATTAAKDGELRNFDAEQTFLKADINEELYREISEKYQKFPGAVGQLNKAIYGL---------------------QGKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTIDRFAAELGQKSKLKDMGDVRYYMGCHITRNRKARKLKIDQHLYVESMVEKFDAEKVRKIPATSGVPTLSKTDEPRNPEKEEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKKNGPAHKKAAMNIMQY 228
            +L+A    ++  LR+FD +Q F+++D++E+++  + E   +  G + +LNK++YGL                     Q  AD CVFR + +G   V +VVHVDDI +  +++   D+F  +L     +K++GD+R+Y GC   R+  A  LKI Q  Y E +  +F  E  ++IP   G+  LS+ D     + EE+  +P+RE +G+LMW AT TRPDIA+AVRAVAR+C       H +A + I+ Y
Sbjct:  718 LLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEE-RCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFD-----QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPK-EIHWRAGLGILGY 958          
BLAST of mRNA_H-elongata_contig172438.4459.1 vs. uniprot
Match: A0A6H5J4N2_9PHAE (Integrase catalytic domain-containing protein n=18 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4N2_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 3.860e-36
Identity = 89/249 (35.74%), Postives = 138/249 (55.42%), Query Frame = 0
Query:    1 MLSATTAAKDGELRNFDAEQTFLKADINEELYREISEKYQKFPGAVGQLNKAIYGL---------------------QGKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTIDRFAAELGQKSKLKDMGDVRYYMGCHITRNRKARKLKIDQHLYVESMVEKFDAEKVRKIPATSGVPTLSKTDEPRNPEKEEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKKNGPAHKKAAMNIMQY 228
            ML+A     + +L +FD EQ F+++++ E++Y  + +      G + +L K++YGL                     Q  AD CVFR + DG   +++VVHVDDI A   ++   D+F A+L +   +K++G++R+Y GC   RN++  +L I Q  + + +  ++     R +P +SGV  LS  D       E   +FP+RE VG+LMW AT TRPDIA+AVRAVAR+C       H  AAM+I+ Y
Sbjct: 1383 MLAALACELNLDLCHFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGV-KLSDFD-----ADEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPK-LVHWNAAMDILGY 1623          
BLAST of mRNA_H-elongata_contig172438.4459.1 vs. uniprot
Match: A0A6H5L867_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L867_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 3.860e-36
Identity = 89/249 (35.74%), Postives = 138/249 (55.42%), Query Frame = 0
Query:    1 MLSATTAAKDGELRNFDAEQTFLKADINEELYREISEKYQKFPGAVGQLNKAIYGL---------------------QGKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTIDRFAAELGQKSKLKDMGDVRYYMGCHITRNRKARKLKIDQHLYVESMVEKFDAEKVRKIPATSGVPTLSKTDEPRNPEKEEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKKNGPAHKKAAMNIMQY 228
            ML+A     + +L +FD EQ F+++++ E++Y  + +      G + +L K++YGL                     Q  AD CVFR + DG   +++VVHVDDI A   ++   D+F A+L +   +K++G++R+Y GC   RN++  +L I Q  + + +  ++     R +P +SGV  LS  D       E   +FP+RE VG+LMW AT TRPDIA+AVRAVAR+C       H  AAM+I+ Y
Sbjct: 1169 MLAALACELNLDLCHFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGV-KLSDFD-----ADEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPK-LVHWNAAMDILGY 1409          
BLAST of mRNA_H-elongata_contig172438.4459.1 vs. uniprot
Match: A0A6H5KBD4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD4_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 3.990e-36
Identity = 89/249 (35.74%), Postives = 138/249 (55.42%), Query Frame = 0
Query:    1 MLSATTAAKDGELRNFDAEQTFLKADINEELYREISEKYQKFPGAVGQLNKAIYGL---------------------QGKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTIDRFAAELGQKSKLKDMGDVRYYMGCHITRNRKARKLKIDQHLYVESMVEKFDAEKVRKIPATSGVPTLSKTDEPRNPEKEEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKKNGPAHKKAAMNIMQY 228
            ML+A     + +L +FD EQ F+++++ E++Y  + +      G + +L K++YGL                     Q  AD CVFR + DG   +++VVHVDDI A   ++   D+F A+L +   +K++G++R+Y GC   RN++  +L I Q  + + +  ++     R +P +SGV  LS  D       E   +FP+RE VG+LMW AT TRPDIA+AVRAVAR+C       H  AAM+I+ Y
Sbjct: 1237 MLAALACELNLDLCHFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGV-KLSDFD-----ADEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPK-LVHWNAAMDILGY 1477          
BLAST of mRNA_H-elongata_contig172438.4459.1 vs. uniprot
Match: A0A6H5JG40_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG40_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 9.360e-36
Identity = 89/249 (35.74%), Postives = 137/249 (55.02%), Query Frame = 0
Query:    1 MLSATTAAKDGELRNFDAEQTFLKADINEELYREISEKYQKFPGAVGQLNKAIYGL---------------------QGKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTIDRFAAELGQKSKLKDMGDVRYYMGCHITRNRKARKLKIDQHLYVESMVEKFDAEKVRKIPATSGVPTLSKTDEPRNPEKEEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKKNGPAHKKAAMNIMQY 228
            ML+A     + +L +FD EQ F+++++ E++Y  + +      G + +L K++YGL                     Q  AD CVFR + DG   +++VVHVDDI A   ++   D+F A+L +   +K++G++R+Y GC   RN++  +L I Q  + + +  ++     R +P +SGV  LS  D       E    FP+RE VG+LMW AT TRPDIA+AVRAVAR+C       H  AAM+I+ Y
Sbjct:  877 MLAALACELNLDLCHFDIEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGV-KLSDFD-----ADEVATDFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPK-LVHWNAAMDILGY 1117          
BLAST of mRNA_H-elongata_contig172438.4459.1 vs. uniprot
Match: A0A6H5J9U0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9U0_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 1.410e-34
Identity = 87/249 (34.94%), Postives = 136/249 (54.62%), Query Frame = 0
Query:    1 MLSATTAAKDGELRNFDAEQTFLKADINEELYREISEKYQKFPGAVGQLNKAIYGL---------------------QGKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTIDRFAAELGQKSKLKDMGDVRYYMGCHITRNRKARKLKIDQHLYVESMVEKFDAEKVRKIPATSGVPTLSKTDEPRNPEKEEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKKNGPAHKKAAMNIMQY 228
            ML+A     + +L +FD EQ F+++++ E++Y  + +      G + +L K++YGL                     Q  AD CVFR + DG   +++VVHVDDI A   ++   D+F A+L +   +K++G++R+Y GC   RN++  +L I Q  + + +  ++     + +P +SGV  LS  D       E    FP+RE VG+LMW AT TRP IA+AVRAVAR+C       H  AAM+I+ Y
Sbjct:  517 MLAALACELNLDLCHFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGKSVPMSSGV-KLSDFD-----ADEVATDFPFRELVGSLMWLATQTRPGIANAVRAVARYCASPK-LVHWNAAMDILGY 757          
BLAST of mRNA_H-elongata_contig172438.4459.1 vs. uniprot
Match: A0A6H5KJF9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJF9_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.840e-34
Identity = 83/249 (33.33%), Postives = 133/249 (53.41%), Query Frame = 0
Query:    1 MLSATTAAKDGELRNFDAEQTFLKADINEELYREISEKYQKFPGAVGQLNKAIYGL---------------------QGKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTIDRFAAELGQKSKLKDMGDVRYYMGCHITRNRKARKLKIDQHLYVESMVEKFDAEKVRKIPATSGVPTLSKTDEPRNPEKEEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKKNGPAHKKAAMNIMQY 228
            ML+A     + +L +FD EQ F+++++ E++Y  + +      G + +L K++YGL                     Q  AD CVFR +  G   +++VVHVDDI A   ++   D+F A+L +   +K++G++R+Y GC   R+++  +L I Q  + + +  ++     + +P +SGV  LS  D       EE   FP+ E VG+LMW AT  RPDIA+A+RAVAR+C       H   AM I+ Y
Sbjct:    1 MLAALACELNLDLCHFDIEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEGGCVVLILVVHVDDIFA-VGEREKCDKFGADLNKSVPVKNLGELRWYSGCFYERSKETGRLTISQQTFTDELAAEYGVAGGKSVPMSSGV-KLSDFD-----ADEEATDFPFCELVGSLMWLATQIRPDIANAIRAVARYCASPKR-VHWDTAMGILGY 241          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig172438.4459.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLN0_9PHAE8.040e-3835.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JFG2_9PHAE2.310e-3735.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE6.920e-3735.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K2R1_9PHAE1.960e-3635.74Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5J4N2_9PHAE3.860e-3635.74Integrase catalytic domain-containing protein n=18... [more]
A0A6H5L867_9PHAE3.860e-3635.74Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KBD4_9PHAE3.990e-3635.74Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JG40_9PHAE9.360e-3635.74Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5J9U0_9PHAE1.410e-3434.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJF9_9PHAE1.840e-3433.33Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 70..149
e-value: 9.0E-12
score: 45.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig172438contigH-elongata_contig172438:587..1333 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig172438.4459.1mRNA_H-elongata_contig172438.4459.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig172438 299..1333 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig172438.4459.1 ID=prot_H-elongata_contig172438.4459.1|Name=mRNA_H-elongata_contig172438.4459.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=228bp
MLSATTAAKDGELRNFDAEQTFLKADINEELYREISEKYQKFPGAVGQLN
KAIYGLQGKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTIDRFAAE
LGQKSKLKDMGDVRYYMGCHITRNRKARKLKIDQHLYVESMVEKFDAEKV
RKIPATSGVPTLSKTDEPRNPEKEEMRKFPYREAVGALMWTATMTRPDIA
SAVRAVARFCEKKNGPAHKKAAMNIMQY
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2