prot_H-elongata_contig16938.4306.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig16938.4306.1
Unique Name	prot_H-elongata_contig16938.4306.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	132

Homology

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BLAST of mRNA_H-elongata_contig16938.4306.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 8.410e-33
Identity = 63/138 (45.65%), Postives = 89/138 (64.49%), Query Frame = 0

Query:    5 WEGMKEDVTELVPQCLHCADSGAGNVVPRRLGEILYGTEVGEVLHLDFLKLG----------DSDDGYAYVLVLVDDVSSIVSLQPAASCTSEVSARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVATKLGASHRF 132
            W  M+E VT+ V QCLHC DS AG  VPR LGE ++GT  GEV+H D+L +G          D ++G+ Y+LV++DD+S+ V L+P  +CT+ ++A+ +L W  +LG PEV+VSD A HFKN  +  + T LG    F
Sbjct: 1323 WFRMEEHVTDFVKQCLHCMDSKAGEKVPRPLGETVHGTRPGEVVHFDYLYVGASGPLGDDGLDEEEGFKYILVMMDDMSNWVWLEPTGACTACLTAQHLLTWCKILGVPEVWVSDTASHFKNHMMAALETALGVDRNF 1460

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BLAST of mRNA_H-elongata_contig16938.4306.1 vs. uniprot
Match: A0A6H5J9M0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9M0_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.740e-25
Identity = 50/114 (43.86%), Postives = 74/114 (64.91%), Query Frame = 0

Query:    8 MKEDVTELVPQCLHCADSGAGNVVPRRLGEILYGTEVGEVLHLDFLKLG----------DSDDGYAYVLVLVDDVSSIVSLQPAASCTSEVSARSILEWVSVLGTPEVFVSDGA 111
            M+E VT+ V  CL+C DS AG  VP+ LGE  +GT  GEV+  D+L +G          D +DG+ Y+LV++DD+S+ V L+P  +CT+ ++++ +L W   LG PEV+VSD A
Sbjct:    1 MEEHVTDFVKHCLNCMDSKAGEKVPQPLGETAHGTRPGEVVLFDYLYVGASGLLGKDSLDEEDGFKYILVMMDDMSNWVWLEPTGACTARLTSQHLLTWCKTLGVPEVWVSDTA 114

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BLAST of mRNA_H-elongata_contig16938.4306.1 vs. uniprot
Match: R7Q542_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q542_CHOCR)

HSP 1 Score: 100 bits (250), Expect = 3.500e-22
Identity = 49/128 (38.28%), Postives = 69/128 (53.91%), Query Frame = 0

Query:    5 WEGMKEDVTELVPQCLHCADSGAGNVVPRRLGEILYGTEVGEVLHLDFLKLGDSDDGYAYVLVLVDDVSSIVSLQPAASCTSEVSARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVATKLGASHRF 132
            W  + +DV  LV  C HC  +  G VVPR LG  ++G    EV+H+DFL +G       Y+L+L DD+SS + L P    T+  +A ++  W+ V G  E  VSD   HFKN  +K +  +L   H F
Sbjct:  316 WSSLDQDVKALVRGCYHCIVTRTGEVVPRPLGHAIHGDRPNEVVHMDFLYMGQGLSNKKYLLILRDDLSSYIWLWPTEDTTAASAAEALCVWIGVFGCMEWMVSDQGSHFKNSLIKSLTDELRTKHHF 443

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BLAST of mRNA_H-elongata_contig16938.4306.1 vs. uniprot
Match: A0A225UPK1_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UPK1_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 7.610e-22
Identity = 50/131 (38.17%), Postives = 74/131 (56.49%), Query Frame = 0

Query:    2 QVIWEGMKEDVTELVPQCLHCADSGAGNVVPRRLGEILYGTEVGEVLHLDFLKLGDSDDGYAYVLVLVDDVSSIVSLQPAASCTSEVSARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVATKLGASHRF 132
            Q +W+GM +D+   V  CLHCA S  G   PR LGE ++     E++H D+L +GDS+    YVLV+ DD SS+     A S T  +    +++W +  G    +VSD   HFKN+T++ +   +GA H F
Sbjct:  184 QSVWKGMNKDIELFVNPCLHCASSVGGPPQPRLLGEAMHAERPNELIHWDYLFMGDSETKDCYVLVIKDDASSLSGCSHAKSRTPTLYFG-LMDWFTSFGVCRTWVSDQGTHFKNKTIESLQHAMGAHHHF 313

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BLAST of mRNA_H-elongata_contig16938.4306.1 vs. uniprot
Match: A0A2P4X9C5_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X9C5_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.010e-20
Identity = 47/125 (37.60%), Postives = 73/125 (58.40%), Query Frame = 0

Query:    8 MKEDVTELVPQCLHCADSGAGNVVPRRLGEILYGTEVGEVLHLDFLKLGDSDDGYAYVLVLVDDVSSIVSLQPAASCTSEVSARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVATKLGASHRF 132
            +K+ + + + QCL C       ++PR  G +L  TE  EV+H DFL LGDS    AY+LV+ D +S    L P A+ T+ V+A  ++ W ++ GTP+  +SD   HF+NE +  +AT+L    +F
Sbjct:  107 LKDKIAQFIRQCLLCKHFKGPRLIPRPYGPLLTPTERNEVVHWDFLSLGDSYGDSAYLLVVKDGLSHYCELFPCATPTAYVAAEVLMMWHAIFGTPKTLMSDQGSHFRNEMINHLATRLKIEQKF 231

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BLAST of mRNA_H-elongata_contig16938.4306.1 vs. uniprot
Match: A0A329RCS9_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RCS9_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 8.250e-18
Identity = 47/125 (37.60%), Postives = 72/125 (57.60%), Query Frame = 0

Query:    8 MKEDVTELVPQCLHCADSGAGNVVPRRLGEILYGTEVGEVLHLDFLKLGDSDDGYAYVLVLVDDVSSIVSLQPAASCTSEVSARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVATKLGASHRF 132
            M++ V   V  CL C       ++PR  G +L  TE  EV+H +FL LGD     AY+LV+ D +S    L P ++ T+ V++ ++L W +  GTP++ +SD   HF+NET+  +AT+L    RF
Sbjct:  213 MEDKVARFVRTCLLCKHFKGPRLIPRPYGPLLTPTERNEVVHWEFLFLGDGYGNSAYLLVVKDGLSHFCELFPCSTPTAYVASEALLMWHARYGTPKMLLSDQGSHFRNETMAHLATRLKIELRF 337

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BLAST of mRNA_H-elongata_contig16938.4306.1 vs. uniprot
Match: A0A6A4YXI7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YXI7_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.910e-17
Identity = 44/123 (35.77%), Postives = 68/123 (55.28%), Query Frame = 0

Query:    8 MKEDVTELVPQCLHCADSGAGNVVPRRLGEILYGTEVGEVLHLDFLKLGDSDDGYAYVLVLVDDVSSIVSLQPAASCTSEVSARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVATKLGASH 130
            + E +   +  CL C     G ++ R  G     T   + LH D+L +G++  G  YVLVL DD++  V L    S TS+V+  +I++W ++ G PEV++SDG  HFKN  +K +A +L   H
Sbjct:  994 LDEKLAAFLRSCLLCPHIRGGKIIQRPHGNTWSATRRNQGLHFDYLFMGETWKGSKYVLVLKDDLTHFVRLIACDSPTSQVAVDAIMDWSAMFGVPEVWISDGGSHFKNNIMKALAHRLKVQH 1116

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BLAST of mRNA_H-elongata_contig16938.4306.1 vs. uniprot
Match: A0A2P4Y8M4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y8M4_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.590e-17
Identity = 45/125 (36.00%), Postives = 69/125 (55.20%), Query Frame = 0

Query:    8 MKEDVTELVPQCLHCADSGAGNVVPRRLGEILYGTEVGEVLHLDFLKLGDSDDGYAYVLVLVDDVSSIVSLQPAASCTSEVSARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVATKLGASHRF 132
            +++ + + + QCL C       ++PR  G +   TE  EVLH DFL LGDS    AY+LVL D +S    L P A+ T+ V+A  ++ W +  GT +  +SD   HF+NE +  +A +L    +F
Sbjct:  917 LEDKIAQFIRQCLLCKHFKGARLIPRPYGPLFTPTERNEVLHWDFLSLGDSYGDSAYLLVLKDGLSHYYELFPCATPTAYVAAEVLMMWDARFGTSKTLMSDQGSHFRNEMINQLAARLKIEPKF 1041

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BLAST of mRNA_H-elongata_contig16938.4306.1 vs. uniprot
Match: A0A225VA87_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VA87_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 3.310e-17
Identity = 44/125 (35.20%), Postives = 71/125 (56.80%), Query Frame = 0

Query:    8 MKEDVTELVPQCLHCADSGAGNVVPRRLGEILYGTEVGEVLHLDFLKLGDSDDGYAYVLVLVDDVSSIVSLQPAASCTSEVSARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVATKLGASHRF 132
            +++ + + + QCL C       ++PR  G +L  T+  EV+H DFL LGDS    AY+LV+ D +S    L P A+ T+ V+A  ++ W +  GTP+  +SD   HF+NE +  +A +L    +F
Sbjct:  263 LEDKIAQFIRQCLLCKHFKGPRLIPRPYGPLLTPTKRNEVVHWDFLSLGDSYGDSAYLLVVKDGLSHYCELFPCATPTAYVAAEVLMMWHARFGTPKTLMSDQGSHFRNEMINHLAARLKIEPKF 387

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BLAST of mRNA_H-elongata_contig16938.4306.1 vs. uniprot
Match: A0A6A3JAA2_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3JAA2_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 7.620e-17
Identity = 44/125 (35.20%), Postives = 69/125 (55.20%), Query Frame = 0

Query:    8 MKEDVTELVPQCLHCADSGAGNVVPRRLGEILYGTEVGEVLHLDFLKLGDSDDGYAYVLVLVDDVSSIVSLQPAASCTSEVSARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVATKLGASHRF 132
            +++ V + V QCL C       ++PR  G +L  TE  EV+H DFL LG+     AY+LV+ D +S    L P A+    V+A ++L W +  G P+  +SD   HF+NE ++ +A++L     F
Sbjct:   87 LEDKVAKFVRQCLLCKHVKGSRLIPRPYGPLLTPTERNEVVHWDFLSLGEGYGDPAYLLVVKDGLSHFCELFPCATSIVYVAAEALLMWAARYGIPKTLLSDQGTHFRNEMMRHMASRLKVEQNF 211

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig16938.4306.1 vs. uniprot

BLAST of mRNA_H-elongata_contig16938.4306.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K5A5_9PHAE	8.410e-33	45.65	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J9M0_9PHAE	1.740e-25	43.86	Integrase catalytic domain-containing protein n=1 ...	[more]
R7Q542_CHOCR	3.500e-22	38.28	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]
A0A225UPK1_9STRA	7.610e-22	38.17	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A2P4X9C5_9STRA	1.010e-20	37.60	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A329RCS9_9STRA	8.250e-18	37.60	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6A4YXI7_9STRA	1.910e-17	35.77	Uncharacterized protein n=1 Tax=Aphanomyces astaci...	[more]
A0A2P4Y8M4_9STRA	2.590e-17	36.00	Uncharacterized protein n=1 Tax=Phytophthora palmi...	[more]
A0A225VA87_9STRA	3.310e-17	35.20	Uncharacterized protein n=1 Tax=Phytophthora megak...	[more]
A0A6A3JAA2_9STRA	7.620e-17	35.20	Uncharacterized protein n=4 Tax=Phytophthora TaxID...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 39..132 e-value: 1.1E-14 score: 56.1
None	No IPR available	PANTHER	PTHR24559:SF275		coord: 5..123
None	No IPR available	PANTHER	PTHR24559	FAMILY NOT NAMED	coord: 5..123
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 28..132 score: 12.869
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 39..132

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig16938	contig	H-elongata_contig16938:1792..2187 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig16938.4306.1	mRNA_H-elongata_contig16938.4306.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig16938 1792..2187 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig16938.4306.1 ID=prot_H-elongata_contig16938.4306.1|Name=mRNA_H-elongata_contig16938.4306.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
MQVIWEGMKEDVTELVPQCLHCADSGAGNVVPRRLGEILYGTEVGEVLHL
DFLKLGDSDDGYAYVLVLVDDVSSIVSLQPAASCTSEVSARSILEWVSVL
GTPEVFVSDGAPHFKNETLKLVATKLGASHRF

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR001584	Integrase_cat-core
IPR012337	RNaseH-like_sf