mRNA_H-elongata_contig16938.4306.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig16938.4306.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 131 bits (329), Expect = 8.410e-33 Identity = 63/138 (45.65%), Postives = 89/138 (64.49%), Query Frame = 1
Query: 13 WEGMKEDVTELVPQCLHCADSGAGNVVPRRLGEILYGTEVGEVLHLDFLKLG----------DSDDGYAYVLVLVDDVSSIVSLQPAASCTSEVSARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVATKLGASHRF 396
W M+E VT+ V QCLHC DS AG VPR LGE ++GT GEV+H D+L +G D ++G+ Y+LV++DD+S+ V L+P +CT+ ++A+ +L W +LG PEV+VSD A HFKN + + T LG F
Sbjct: 1323 WFRMEEHVTDFVKQCLHCMDSKAGEKVPRPLGETVHGTRPGEVVHFDYLYVGASGPLGDDGLDEEEGFKYILVMMDDMSNWVWLEPTGACTACLTAQHLLTWCKILGVPEVWVSDTASHFKNHMMAALETALGVDRNF 1460
BLAST of mRNA_H-elongata_contig16938.4306.1 vs. uniprot
Match: A0A6H5J9M0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9M0_9PHAE) HSP 1 Score: 102 bits (253), Expect = 1.740e-25 Identity = 50/114 (43.86%), Postives = 74/114 (64.91%), Query Frame = 1
Query: 22 MKEDVTELVPQCLHCADSGAGNVVPRRLGEILYGTEVGEVLHLDFLKLG----------DSDDGYAYVLVLVDDVSSIVSLQPAASCTSEVSARSILEWVSVLGTPEVFVSDGA 333
M+E VT+ V CL+C DS AG VP+ LGE +GT GEV+ D+L +G D +DG+ Y+LV++DD+S+ V L+P +CT+ ++++ +L W LG PEV+VSD A
Sbjct: 1 MEEHVTDFVKHCLNCMDSKAGEKVPQPLGETAHGTRPGEVVLFDYLYVGASGLLGKDSLDEEDGFKYILVMMDDMSNWVWLEPTGACTARLTSQHLLTWCKTLGVPEVWVSDTA 114
BLAST of mRNA_H-elongata_contig16938.4306.1 vs. uniprot
Match: R7Q542_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q542_CHOCR) HSP 1 Score: 100 bits (250), Expect = 3.500e-22 Identity = 49/128 (38.28%), Postives = 69/128 (53.91%), Query Frame = 1
Query: 13 WEGMKEDVTELVPQCLHCADSGAGNVVPRRLGEILYGTEVGEVLHLDFLKLGDSDDGYAYVLVLVDDVSSIVSLQPAASCTSEVSARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVATKLGASHRF 396
W + +DV LV C HC + G VVPR LG ++G EV+H+DFL +G Y+L+L DD+SS + L P T+ +A ++ W+ V G E VSD HFKN +K + +L H F
Sbjct: 316 WSSLDQDVKALVRGCYHCIVTRTGEVVPRPLGHAIHGDRPNEVVHMDFLYMGQGLSNKKYLLILRDDLSSYIWLWPTEDTTAASAAEALCVWIGVFGCMEWMVSDQGSHFKNSLIKSLTDELRTKHHF 443
BLAST of mRNA_H-elongata_contig16938.4306.1 vs. uniprot
Match: A0A225UPK1_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UPK1_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 7.610e-22 Identity = 50/131 (38.17%), Postives = 74/131 (56.49%), Query Frame = 1
Query: 4 QVIWEGMKEDVTELVPQCLHCADSGAGNVVPRRLGEILYGTEVGEVLHLDFLKLGDSDDGYAYVLVLVDDVSSIVSLQPAASCTSEVSARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVATKLGASHRF 396
Q +W+GM +D+ V CLHCA S G PR LGE ++ E++H D+L +GDS+ YVLV+ DD SS+ A S T + +++W + G +VSD HFKN+T++ + +GA H F
Sbjct: 184 QSVWKGMNKDIELFVNPCLHCASSVGGPPQPRLLGEAMHAERPNELIHWDYLFMGDSETKDCYVLVIKDDASSLSGCSHAKSRTPTLYFG-LMDWFTSFGVCRTWVSDQGTHFKNKTIESLQHAMGAHHHF 313
BLAST of mRNA_H-elongata_contig16938.4306.1 vs. uniprot
Match: A0A2P4X9C5_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X9C5_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 1.010e-20 Identity = 47/125 (37.60%), Postives = 73/125 (58.40%), Query Frame = 1
Query: 22 MKEDVTELVPQCLHCADSGAGNVVPRRLGEILYGTEVGEVLHLDFLKLGDSDDGYAYVLVLVDDVSSIVSLQPAASCTSEVSARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVATKLGASHRF 396
+K+ + + + QCL C ++PR G +L TE EV+H DFL LGDS AY+LV+ D +S L P A+ T+ V+A ++ W ++ GTP+ +SD HF+NE + +AT+L +F
Sbjct: 107 LKDKIAQFIRQCLLCKHFKGPRLIPRPYGPLLTPTERNEVVHWDFLSLGDSYGDSAYLLVVKDGLSHYCELFPCATPTAYVAAEVLMMWHAIFGTPKTLMSDQGSHFRNEMINHLATRLKIEQKF 231
BLAST of mRNA_H-elongata_contig16938.4306.1 vs. uniprot
Match: A0A329RCS9_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RCS9_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 8.250e-18 Identity = 47/125 (37.60%), Postives = 72/125 (57.60%), Query Frame = 1
Query: 22 MKEDVTELVPQCLHCADSGAGNVVPRRLGEILYGTEVGEVLHLDFLKLGDSDDGYAYVLVLVDDVSSIVSLQPAASCTSEVSARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVATKLGASHRF 396
M++ V V CL C ++PR G +L TE EV+H +FL LGD AY+LV+ D +S L P ++ T+ V++ ++L W + GTP++ +SD HF+NET+ +AT+L RF
Sbjct: 213 MEDKVARFVRTCLLCKHFKGPRLIPRPYGPLLTPTERNEVVHWEFLFLGDGYGNSAYLLVVKDGLSHFCELFPCSTPTAYVASEALLMWHARYGTPKMLLSDQGSHFRNETMAHLATRLKIELRF 337
BLAST of mRNA_H-elongata_contig16938.4306.1 vs. uniprot
Match: A0A6A4YXI7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YXI7_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 1.910e-17 Identity = 44/123 (35.77%), Postives = 68/123 (55.28%), Query Frame = 1
Query: 22 MKEDVTELVPQCLHCADSGAGNVVPRRLGEILYGTEVGEVLHLDFLKLGDSDDGYAYVLVLVDDVSSIVSLQPAASCTSEVSARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVATKLGASH 390
+ E + + CL C G ++ R G T + LH D+L +G++ G YVLVL DD++ V L S TS+V+ +I++W ++ G PEV++SDG HFKN +K +A +L H
Sbjct: 994 LDEKLAAFLRSCLLCPHIRGGKIIQRPHGNTWSATRRNQGLHFDYLFMGETWKGSKYVLVLKDDLTHFVRLIACDSPTSQVAVDAIMDWSAMFGVPEVWISDGGSHFKNNIMKALAHRLKVQH 1116
BLAST of mRNA_H-elongata_contig16938.4306.1 vs. uniprot
Match: A0A2P4Y8M4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y8M4_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 2.590e-17 Identity = 45/125 (36.00%), Postives = 69/125 (55.20%), Query Frame = 1
Query: 22 MKEDVTELVPQCLHCADSGAGNVVPRRLGEILYGTEVGEVLHLDFLKLGDSDDGYAYVLVLVDDVSSIVSLQPAASCTSEVSARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVATKLGASHRF 396
+++ + + + QCL C ++PR G + TE EVLH DFL LGDS AY+LVL D +S L P A+ T+ V+A ++ W + GT + +SD HF+NE + +A +L +F
Sbjct: 917 LEDKIAQFIRQCLLCKHFKGARLIPRPYGPLFTPTERNEVLHWDFLSLGDSYGDSAYLLVLKDGLSHYYELFPCATPTAYVAAEVLMMWDARFGTSKTLMSDQGSHFRNEMINQLAARLKIEPKF 1041
BLAST of mRNA_H-elongata_contig16938.4306.1 vs. uniprot
Match: A0A225VA87_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VA87_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 3.310e-17 Identity = 44/125 (35.20%), Postives = 71/125 (56.80%), Query Frame = 1
Query: 22 MKEDVTELVPQCLHCADSGAGNVVPRRLGEILYGTEVGEVLHLDFLKLGDSDDGYAYVLVLVDDVSSIVSLQPAASCTSEVSARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVATKLGASHRF 396
+++ + + + QCL C ++PR G +L T+ EV+H DFL LGDS AY+LV+ D +S L P A+ T+ V+A ++ W + GTP+ +SD HF+NE + +A +L +F
Sbjct: 263 LEDKIAQFIRQCLLCKHFKGPRLIPRPYGPLLTPTKRNEVVHWDFLSLGDSYGDSAYLLVVKDGLSHYCELFPCATPTAYVAAEVLMMWHARFGTPKTLMSDQGSHFRNEMINHLAARLKIEPKF 387
BLAST of mRNA_H-elongata_contig16938.4306.1 vs. uniprot
Match: A0A6A3JAA2_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3JAA2_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 7.620e-17 Identity = 44/125 (35.20%), Postives = 69/125 (55.20%), Query Frame = 1
Query: 22 MKEDVTELVPQCLHCADSGAGNVVPRRLGEILYGTEVGEVLHLDFLKLGDSDDGYAYVLVLVDDVSSIVSLQPAASCTSEVSARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVATKLGASHRF 396
+++ V + V QCL C ++PR G +L TE EV+H DFL LG+ AY+LV+ D +S L P A+ V+A ++L W + G P+ +SD HF+NE ++ +A++L F
Sbjct: 87 LEDKVAKFVRQCLLCKHVKGSRLIPRPYGPLLTPTERNEVVHWDFLSLGEGYGDPAYLLVVKDGLSHFCELFPCATSIVYVAAEALLMWAARYGIPKTLLSDQGTHFRNEMMRHMASRLKVEQNF 211 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16938.4306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig16938.4306.1 >prot_H-elongata_contig16938.4306.1 ID=prot_H-elongata_contig16938.4306.1|Name=mRNA_H-elongata_contig16938.4306.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp MQVIWEGMKEDVTELVPQCLHCADSGAGNVVPRRLGEILYGTEVGEVLHLback to top mRNA from alignment at H-elongata_contig16938:1792..2187+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig16938.4306.1 ID=mRNA_H-elongata_contig16938.4306.1|Name=mRNA_H-elongata_contig16938.4306.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=396bp|location=Sequence derived from alignment at H-elongata_contig16938:1792..2187+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig16938:1792..2187+ >mRNA_H-elongata_contig16938.4306.1 ID=mRNA_H-elongata_contig16938.4306.1|Name=mRNA_H-elongata_contig16938.4306.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig16938:1792..2187+ (Himanthalia elongata Himel1 dioecious)back to top |