prot_H-elongata_contig166652.4178.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig166652.4178.1
Unique Nameprot_H-elongata_contig166652.4178.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length63
Homology
[Close]
BLAST of mRNA_H-elongata_contig166652.4178.1 vs. uniprot
Match: D7FMV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV8_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 1.060e-14
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 0 
Query:    5 GLVVLLPIYSNGGDEADGARHLSMANLAEKSRALWAGVVFAWFFTLFFLYSMRKEFLA 62
            G+V LLPIY  G ++++GA  LSMANL E    LW+GVVFA+ FT++FLYS+RKEF A
Sbjct:  161 GMVFLLPIYEQGINDSEGASRLSMANLQEGGETLWSGVVFAYLFTIYFLYSLRKEFFA 218
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig166652.4178.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMV8_ECTSI1.060e-1460.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032880Calcium permeable stress-gated cation channel 1, N-terminal transmembrane domainPFAMPF13967RSN1_TMcoord: 6..58
e-value: 1.6E-9
score: 37.7
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 57..62
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 37..56
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..36
NoneNo IPR availableTMHMMTMhelixcoord: 37..54

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig166652contigH-elongata_contig166652:345..533 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig166652.4178.1mRNA_H-elongata_contig166652.4178.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig166652 345..533 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig166652.4178.1 ID=prot_H-elongata_contig166652.4178.1|Name=mRNA_H-elongata_contig166652.4178.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
FVPPGLVVLLPIYSNGGDEADGARHLSMANLAEKSRALWAGVVFAWFFTL
FFLYSMRKEFLA*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032880Csc1_N