mRNA_H-elongata_contig166652.4178.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig166652.4178.1
Unique NamemRNA_H-elongata_contig166652.4178.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig166652.4178.1 vs. uniprot
Match: D7FMV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV8_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 1.060e-14
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:   13 GLVVLLPIYSNGGDEADGARHLSMANLAEKSRALWAGVVFAWFFTLFFLYSMRKEFLA 186
            G+V LLPIY  G ++++GA  LSMANL E    LW+GVVFA+ FT++FLYS+RKEF A
Sbjct:  161 GMVFLLPIYEQGINDSEGASRLSMANLQEGGETLWSGVVFAYLFTIYFLYSLRKEFFA 218
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig166652.4178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMV8_ECTSI1.060e-1460.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig166652contigH-elongata_contig166652:345..533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.3
Seed ortholog evalue5.9e-12
Seed eggNOG ortholog2880.D7FMV8
EggNOG free text desc.ion transport
EggNOG OGsCOG5594@1,KOG1134@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons1
Model size189
Cds size189
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929974.711487-CDS-H-elongata_contig166652:344..5331622929974.711487-CDS-H-elongata_contig166652:344..533Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig166652 345..533 -
1691679230.7893426-CDS-H-elongata_contig166652:344..5331691679230.7893426-CDS-H-elongata_contig166652:344..533Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig166652 345..533 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig166652.4178.1prot_H-elongata_contig166652.4178.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig166652 345..533 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig166652.4178.1

>prot_H-elongata_contig166652.4178.1 ID=prot_H-elongata_contig166652.4178.1|Name=mRNA_H-elongata_contig166652.4178.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
FVPPGLVVLLPIYSNGGDEADGARHLSMANLAEKSRALWAGVVFAWFFTL
FFLYSMRKEFLA*
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mRNA from alignment at H-elongata_contig166652:345..533-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig166652.4178.1 ID=mRNA_H-elongata_contig166652.4178.1|Name=mRNA_H-elongata_contig166652.4178.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=189bp|location=Sequence derived from alignment at H-elongata_contig166652:345..533- (Himanthalia elongata Himel1 dioecious)
TTCGTTCCTCCAGGGCTTGTCGTGCTGCTTCCGATCTACTCAAACGGGGG
AGACGAGGCAGACGGTGCGCGCCATCTCTCCATGGCAAACCTCGCAGAGA
AGAGTCGGGCGCTGTGGGCTGGCGTGGTGTTCGCATGGTTCTTCACGCTG
TTTTTTCTTTACAGCATGCGGAAGGAGTTTTTGGCGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig166652:345..533-

>mRNA_H-elongata_contig166652.4178.1 ID=mRNA_H-elongata_contig166652.4178.1|Name=mRNA_H-elongata_contig166652.4178.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig166652:345..533- (Himanthalia elongata Himel1 dioecious)
TTCGTTCCTCCAGGGCTTGTCGTGCTGCTTCCGATCTACTCAAACGGGGG
AGACGAGGCAGACGGTGCGCGCCATCTCTCCATGGCAAACCTCGCAGAGA
AGAGTCGGGCGCTGTGGGCTGGCGTGGTGTTCGCATGGTTCTTCACGCTG
TTTTTTCTTTACAGCATGCGGAAGGAGTTTTTGGCGTGATTCGTTCCTCC
AGGGCTTGTCGTGCTGCTTCCGATCTACTCAAACGGGGGAGACGAGGCAG
ACGGTGCGCGCCATCTCTCCATGGCAAACCTCGCAGAGAAGAGTCGGGCG
CTGTGGGCTGGCGTGGTGTTCGCATGGTTCTTCACGCTGTTTTTTCTTTA
CAGCATGCGGAAGGAGTTTTTGGCGTGA
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