prot_H-elongata_contig165717.4142.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig165717.4142.1
Unique Name	prot_H-elongata_contig165717.4142.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	252

Homology

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BLAST of mRNA_H-elongata_contig165717.4142.1 vs. uniprot
Match: A0A6H5JRJ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ1_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 1.410e-39
Identity = 102/274 (37.23%), Postives = 136/274 (49.64%), Query Frame = 0

Query:   40 VANAQVWHRRLGHLHAQSLDILRKQYGTGITFEG--------------------------------VVLE----------------------------FRQYCLLTAKDQALQSLQLFVGLRVIPFRG-RIVRWRADKSGEYTGEEFRQYYLETSIIQEFAATNTPQKSGVSERVGRTLCAIVRGMLADSGFPSSMWNELFMTAAYLKNRTPHKVLKMETPLNMLHGEEGDLSHLCVIGARTLVHIKD-SKKLEAAALKEKVCGYSKEGKSYRI 251
            + +A  WHRRLGHL+A+SLDILRK  GTG+ F                                  VV++                             ++  LL  K    +++  +  + V    G RI   R DK GE TG EFR Y   ++I  E+AATNTPQ+ GVSER G+TL  + R +L D  FP SMW EL +TAAYL NR+PH  L   TP + LH +  DLS L VIGAR  VH +   KKL+  A + K+CG+  + ++YR+
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDFRDSLSPCGVCQIAKYKQSPHPKQSTRELSRPGQLVVIDNVGPVNPPAKYNGGSFPYACKITDDYTKVKEVYLLRKKSNTTEAVHTY-NICVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSRLRVIGARAFVHQERYRKKLDDRAFEGKLCGFGLDSQTYRV 311

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BLAST of mRNA_H-elongata_contig165717.4142.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 2.590e-39
Identity = 99/273 (36.26%), Postives = 133/273 (48.72%), Query Frame = 0

Query:   40 VANAQVWHRRLGHLHAQSLDILRKQYGTGITFEG--------------------------------VVLE----------------------------FRQYCLLTAKDQALQSLQLFVGLRVIPFRGRIVRWRADKSGEYTGEEFRQYYLETSIIQEFAATNTPQKSGVSERVGRTLCAIVRGMLADSGFPSSMWNELFMTAAYLKNRTPHKVLKMETPLNMLHGEEGDLSHLCVIGARTLVHIKD-SKKLEAAALKEKVCGYSKEGKSYRI 251
            + +A  WHRRLGHL+A+SLDILRK  GTG+ +                                  VV++                             ++  LL  K    +++  +          RI   R DK GE TG EFR Y   ++I  E+AATNTPQ+ GVSER G+TL  + R +L D  FP SMW EL +TAAYL NR+PH  L   TP + LH +  DLS L VIGAR  VH +   KKL+  A + K+CG+  + ++YR+
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRV 311

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BLAST of mRNA_H-elongata_contig165717.4142.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 3.560e-39
Identity = 99/273 (36.26%), Postives = 133/273 (48.72%), Query Frame = 0

Query:   40 VANAQVWHRRLGHLHAQSLDILRKQYGTGITFEG--------------------------------VVLE----------------------------FRQYCLLTAKDQALQSLQLFVGLRVIPFRGRIVRWRADKSGEYTGEEFRQYYLETSIIQEFAATNTPQKSGVSERVGRTLCAIVRGMLADSGFPSSMWNELFMTAAYLKNRTPHKVLKMETPLNMLHGEEGDLSHLCVIGARTLVHIKD-SKKLEAAALKEKVCGYSKEGKSYRI 251
            + +A  WHRRLGHL+A+SLDILRK  GTG+ +                                  VV++                             ++  LL  K    +++  +          RI   R DK GE TG EFR Y   ++I  E+AATNTPQ+ GVSER G+TL  + R +L D  FP SMW EL +TAAYL NR+PH  L   TP + LH +  DLS L VIGAR  VH +   KKL+  A + K+CG+  + ++YR+
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRV 311

[Close]

BLAST of mRNA_H-elongata_contig165717.4142.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 3.610e-39
Identity = 99/273 (36.26%), Postives = 133/273 (48.72%), Query Frame = 0

Query:   40 VANAQVWHRRLGHLHAQSLDILRKQYGTGITFEG--------------------------------VVLE----------------------------FRQYCLLTAKDQALQSLQLFVGLRVIPFRGRIVRWRADKSGEYTGEEFRQYYLETSIIQEFAATNTPQKSGVSERVGRTLCAIVRGMLADSGFPSSMWNELFMTAAYLKNRTPHKVLKMETPLNMLHGEEGDLSHLCVIGARTLVHIKD-SKKLEAAALKEKVCGYSKEGKSYRI 251
            + +A  WHRRLGHL+A+SLDILRK  GTG+ +                                  VV++                             ++  LL  K    +++  +          RI   R DK GE TG EFR Y   ++I  E+AATNTPQ+ GVSER G+TL  + R +L D  FP SMW EL +TAAYL NR+PH  L   TP + LH +  DLS L VIGAR  VH +   KKL+  A + K+CG+  + ++YR+
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRV 311

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BLAST of mRNA_H-elongata_contig165717.4142.1 vs. uniprot
Match: A0A6H5KCM0_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM0_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 9.530e-39
Identity = 98/273 (35.90%), Postives = 132/273 (48.35%), Query Frame = 0

Query:   40 VANAQVWHRRLGHLHAQSLDILRKQYGTGITFEG--------------------------------VVLE----------------------------FRQYCLLTAKDQALQSLQLFVGLRVIPFRGRIVRWRADKSGEYTGEEFRQYYLETSIIQEFAATNTPQKSGVSERVGRTLCAIVRGMLADSGFPSSMWNELFMTAAYLKNRTPHKVLKMETPLNMLHGEEGDLSHLCVIGARTLVHIKDS-KKLEAAALKEKVCGYSKEGKSYRI 251
            + +A  WHRRLGHL+A+SLDILRK  GTG+ +                                  VV++                             ++  LL  K    +++  +          RI   R DK GE TG EFR     ++I  E+AATNTPQ+ GVSER G+TL  + R +L D  FP SMW EL +TAAYL NR+PH  L   TP + LH +  DLS L VIGAR  VH +   KKL+  A + K+CG+  + ++YR+
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDNCKNSAIKLEYAATNTPQQLGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERCRKKLDDRAFEGKLCGFGLDSQTYRV 311

[Close]

BLAST of mRNA_H-elongata_contig165717.4142.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 2.150e-38
Identity = 98/272 (36.03%), Postives = 131/272 (48.16%), Query Frame = 0

Query:   40 VANAQVWHRRLGHLHAQSLDILRKQYGTGITFEG--------------------------------VVLE----------------------------FRQYCLLTAKDQALQSLQLFVGLRVIPFRGRIVRWRADKSGEYTGEEFRQYYLETSIIQEFAATNTPQKSGVSERVGRTLCAIVRGMLADSGFPSSMWNELFMTAAYLKNRTPHKVLKMETPLNMLHGEEGDLSHLCVIGARTLVHIKD-SKKLEAAALKEKVCGYSKEGKSYR 250
            + +A  WHRRLGHL+A+SLDILRK  GTG+ +                                  VV++                             ++  LL  K    +++  +          RI   R DK GE TG EFR Y   ++I  E+AATNTPQ+ G SER G+TL  + R +L D  FP SMW EL +TAAYL NR+PH  L   TP + LH +  DLS L VIGAR  VH +   KKL+  A + K+CG+  + ++YR
Sbjct:  415 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGASERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYR 686

[Close]

BLAST of mRNA_H-elongata_contig165717.4142.1 vs. uniprot
Match: A0A6H5JSL6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSL6_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 2.180e-38
Identity = 98/273 (35.90%), Postives = 132/273 (48.35%), Query Frame = 0

Query:   40 VANAQVWHRRLGHLHAQSLDILRKQYGTGITFEG--------------------------------VVLE----------------------------FRQYCLLTAKDQALQSLQLFVGLRVIPFRGRIVRWRADKSGEYTGEEFRQYYLETSIIQEFAATNTPQKSGVSERVGRTLCAIVRGMLADSGFPSSMWNELFMTAAYLKNRTPHKVLKMETPLNMLHGEEGDLSHLCVIGARTLVHIKD-SKKLEAAALKEKVCGYSKEGKSYRI 251
            + +A  WHRRLGHL+A+SLDILRK  GTG+ +                                  VV++                             ++  LL  K    +++  +          RI   R DK GE TG EFR Y   ++I  E+AATNTPQ+ GVSER G+TL  + R +L D  FP SMW EL +TAAYL NR+PH  L   TP + LH +  DL  L VIGAR  VH +   KKL+  A + K+CG+  + ++YR+
Sbjct:  235 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRSGQLVVIDNMGPANPPAKYQGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIEAIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLLGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRV 507

[Close]

BLAST of mRNA_H-elongata_contig165717.4142.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 2.660e-38
Identity = 98/273 (35.90%), Postives = 132/273 (48.35%), Query Frame = 0

Query:   40 VANAQVWHRRLGHLHAQSLDILRKQYGTGITFEG--------------------------------VVLE----------------------------FRQYCLLTAKDQALQSLQLFVGLRVIPFRGRIVRWRADKSGEYTGEEFRQYYLETSIIQEFAATNTPQKSGVSERVGRTLCAIVRGMLADSGFPSSMWNELFMTAAYLKNRTPHKVLKMETPLNMLHGEEGDLSHLCVIGARTLVHIKD-SKKLEAAALKEKVCGYSKEGKSYRI 251
            + +A  WHRRLGHL+A+SLDILRK  GTG+ +                                  VV++                             ++  LL  K    +++  +          RI   R DK GE TG EFR Y   ++I  E+AATNTPQ+ G SER G+TL  + R +L D  FP SMW EL +TAAYL NR+PH  L   TP + LH +  DLS L VIGAR  VH +   KKL+  A + K+CG+  + ++YR+
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGGSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRV 311

[Close]

BLAST of mRNA_H-elongata_contig165717.4142.1 vs. uniprot
Match: A0A6H5KKW6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKW6_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 7.180e-38
Identity = 84/179 (46.93%), Postives = 106/179 (59.22%), Query Frame = 0

Query:   74 VVLEFRQYCLLTAKDQALQSLQLFVGLRVIPFRGRIVRWRADKSGEYTGEEFRQYYLETSIIQEFAATNTPQKSGVSERVGRTLCAIVRGMLADSGFPSSMWNELFMTAAYLKNRTPHKVLKMETPLNMLHGEEGDLSHLCVIGARTLVHIKD-SKKLEAAALKEKVCGYSKEGKSYRI 251
            V    R+  LL  + +  Q+L  +  ++V     RI   R DK GE TGEE R Y  E++I  EFAATNTPQ+ GVSER  +TL A+ R +L D  FP  MW EL MTAAYL NRTPH  L   TP + ++    DLS L  IGAR  VH +   KKL+  A + K+CGY  + K+YRI
Sbjct:  103 VFTRMREVYLLRDRTETTQALHAY-NMQVASEGYRIEVLRCDKGGENTGEEMRNYCRESAIKPEFAATNTPQEIGVSERDSKTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLRAIGARAFVHHERFKKKLDDRAFEGKLCGYGPDSKTYRI 280

[Close]

BLAST of mRNA_H-elongata_contig165717.4142.1 vs. uniprot
Match: A0A6H5L4X4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4X4_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 8.670e-38
Identity = 85/179 (47.49%), Postives = 107/179 (59.78%), Query Frame = 0

Query:   74 VVLEFRQYCLLTAKDQALQSLQLFVGLRVIPFRGRIVRWRADKSGEYTGEEFRQYYLETSIIQEFAATNTPQKSGVSERVGRTLCAIVRGMLADSGFPSSMWNELFMTAAYLKNRTPHKVLKMETPLNMLHGEEGDLSHLCVIGARTLVHIKD-SKKLEAAALKEKVCGYSKEGKSYRI 251
            V    R+  LL  + +  Q+L  +  ++V     RI   R DK GE TGEE R Y  E++I  EFAATNTPQ+ GVSER G+TL A+ R +L D  FP  MW EL MTAAYL NRTPH  L   TP + ++    DLS L  IGAR  VH +   KKL+  A + K+CGY  + K+YRI
Sbjct:  251 VFTRMREVYLLRDRTETTQALHAY-NMQVASEGYRIEILRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLRAIGARAFVHHERYKKKLDDRAFEGKLCGYGPDSKTYRI 428

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig165717.4142.1 vs. uniprot

BLAST of mRNA_H-elongata_contig165717.4142.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JRJ1_9PHAE	1.410e-39	37.23	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5K500_9PHAE	2.590e-39	36.26	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JJR8_9PHAE	3.560e-39	36.26	Integrase catalytic domain-containing protein n=11...	[more]
A0A6H5KCT3_9PHAE	3.610e-39	36.26	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KCM0_9PHAE	9.530e-39	35.90	Integrase catalytic domain-containing protein n=5 ...	[more]
A0A6H5KT84_9PHAE	2.150e-38	36.03	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JSL6_9PHAE	2.180e-38	35.90	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5K1R7_9PHAE	2.660e-38	35.90	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6H5KKW6_9PHAE	7.180e-38	46.93	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5L4X4_9PHAE	8.670e-38	47.49	Integrase catalytic domain-containing protein n=1 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 77..238 e-value: 1.2E-13 score: 52.7
None	No IPR available	PANTHER	PTHR11439:SF265		coord: 111..228
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 111..228
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 37..207 score: 12.163
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 101..201

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig165717	contig	H-elongata_contig165717:122..1174 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig165717.4142.1	mRNA_H-elongata_contig165717.4142.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig165717 68..1177 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig165717.4142.1 ID=prot_H-elongata_contig165717.4142.1|Name=mRNA_H-elongata_contig165717.4142.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=252bp
MVDSGARGHYFDDAIIRDLKHRLQDYVQLATSRKLAMNAVANAQVWHRRL
GHLHAQSLDILRKQYGTGITFEGVVLEFRQYCLLTAKDQALQSLQLFVGL
RVIPFRGRIVRWRADKSGEYTGEEFRQYYLETSIIQEFAATNTPQKSGVS
ERVGRTLCAIVRGMLADSGFPSSMWNELFMTAAYLKNRTPHKVLKMETPL
NMLHGEEGDLSHLCVIGARTLVHIKDSKKLEAAALKEKVCGYSKEGKSYR
I*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR039537	Retrotran_Ty1/copia-like
IPR001584	Integrase_cat-core
IPR012337	RNaseH-like_sf