mRNA_H-elongata_contig165717.4142.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig165717.4142.1
Unique NamemRNA_H-elongata_contig165717.4142.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig165717.4142.1 vs. uniprot
Match: A0A6H5JRJ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ1_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 4.450e-47
Identity = 115/293 (39.25%), Postives = 150/293 (51.19%), Query Frame = 1 
Query:  121 VANAQVWHRRLGHLHAQSLDILRKQYGTGITFEG--------------------------------VVLE----------------------------FRQYCLLTAKDQALQSLQLFVGLRVIPFRG-RIVRWRADKSGEYTGEEFRQYYLETSIIQEFAATNTPQKSGVSERVGRTLCAIVRGMLADSGFPSSMWNELFMTAAYLKNRTPHKVLKMETPLNMLHGEEGDLSHLCVIGARTLVHIKD-SKKLEAAALKEKVCGYSKEGKSYRI*NPKTRRVVESRNVTFIET 813
            + +A  WHRRLGHL+A+SLDILRK  GTG+ F                                  VV++                             ++  LL  K    +++  +  + V    G RI   R DK GE TG EFR Y   ++I  E+AATNTPQ+ GVSER G+TL  + R +L D  FP SMW EL +TAAYL NR+PH  L   TP + LH +  DLS L VIGAR  VH +   KKL+  A + K+CG+  + ++YR+ NP    VVESRNVTFIE+
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDFRDSLSPCGVCQIAKYKQSPHPKQSTRELSRPGQLVVIDNVGPVNPPAKYNGGSFPYACKITDDYTKVKEVYLLRKKSNTTEAVHTY-NICVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSRLRVIGARAFVHQERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIES 330
[Close]
BLAST of mRNA_H-elongata_contig165717.4142.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 5.050e-47
Identity = 112/292 (38.36%), Postives = 147/292 (50.34%), Query Frame = 1 
Query:  121 VANAQVWHRRLGHLHAQSLDILRKQYGTGITFEG--------------------------------VVLE----------------------------FRQYCLLTAKDQALQSLQLFVGLRVIPFRGRIVRWRADKSGEYTGEEFRQYYLETSIIQEFAATNTPQKSGVSERVGRTLCAIVRGMLADSGFPSSMWNELFMTAAYLKNRTPHKVLKMETPLNMLHGEEGDLSHLCVIGARTLVHIKD-SKKLEAAALKEKVCGYSKEGKSYRI*NPKTRRVVESRNVTFIET 813
            + +A  WHRRLGHL+A+SLDILRK  GTG+ +                                  VV++                             ++  LL  K    +++  +          RI   R DK GE TG EFR Y   ++I  E+AATNTPQ+ GVSER G+TL  + R +L D  FP SMW EL +TAAYL NR+PH  L   TP + LH +  DLS L VIGAR  VH +   KKL+  A + K+CG+  + ++YR+ NP    VVESRNVTFIE+
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIES 330
[Close]
BLAST of mRNA_H-elongata_contig165717.4142.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 1.140e-46
Identity = 112/292 (38.36%), Postives = 147/292 (50.34%), Query Frame = 1 
Query:  121 VANAQVWHRRLGHLHAQSLDILRKQYGTGITFEG--------------------------------VVLE----------------------------FRQYCLLTAKDQALQSLQLFVGLRVIPFRGRIVRWRADKSGEYTGEEFRQYYLETSIIQEFAATNTPQKSGVSERVGRTLCAIVRGMLADSGFPSSMWNELFMTAAYLKNRTPHKVLKMETPLNMLHGEEGDLSHLCVIGARTLVHIKD-SKKLEAAALKEKVCGYSKEGKSYRI*NPKTRRVVESRNVTFIET 813
            + +A  WHRRLGHL+A+SLDILRK  GTG+ +                                  VV++                             ++  LL  K    +++  +          RI   R DK GE TG EFR Y   ++I  E+AATNTPQ+ GVSER G+TL  + R +L D  FP SMW EL +TAAYL NR+PH  L   TP + LH +  DLS L VIGAR  VH +   KKL+  A + K+CG+  + ++YR+ NP    VVESRNVTFIE+
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIES 330
[Close]
BLAST of mRNA_H-elongata_contig165717.4142.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 1.170e-46
Identity = 112/292 (38.36%), Postives = 147/292 (50.34%), Query Frame = 1 
Query:  121 VANAQVWHRRLGHLHAQSLDILRKQYGTGITFEG--------------------------------VVLE----------------------------FRQYCLLTAKDQALQSLQLFVGLRVIPFRGRIVRWRADKSGEYTGEEFRQYYLETSIIQEFAATNTPQKSGVSERVGRTLCAIVRGMLADSGFPSSMWNELFMTAAYLKNRTPHKVLKMETPLNMLHGEEGDLSHLCVIGARTLVHIKD-SKKLEAAALKEKVCGYSKEGKSYRI*NPKTRRVVESRNVTFIET 813
            + +A  WHRRLGHL+A+SLDILRK  GTG+ +                                  VV++                             ++  LL  K    +++  +          RI   R DK GE TG EFR Y   ++I  E+AATNTPQ+ GVSER G+TL  + R +L D  FP SMW EL +TAAYL NR+PH  L   TP + LH +  DLS L VIGAR  VH +   KKL+  A + K+CG+  + ++YR+ NP    VVESRNVTFIE+
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIES 330
[Close]
BLAST of mRNA_H-elongata_contig165717.4142.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 6.450e-46
Identity = 111/292 (38.01%), Postives = 146/292 (50.00%), Query Frame = 1 
Query:  121 VANAQVWHRRLGHLHAQSLDILRKQYGTGITFEG--------------------------------VVLE----------------------------FRQYCLLTAKDQALQSLQLFVGLRVIPFRGRIVRWRADKSGEYTGEEFRQYYLETSIIQEFAATNTPQKSGVSERVGRTLCAIVRGMLADSGFPSSMWNELFMTAAYLKNRTPHKVLKMETPLNMLHGEEGDLSHLCVIGARTLVHIKD-SKKLEAAALKEKVCGYSKEGKSYRI*NPKTRRVVESRNVTFIET 813
            + +A  WHRRLGHL+A+SLDILRK  GTG+ +                                  VV++                             ++  LL  K    +++  +          RI   R DK GE TG EFR Y   ++I  E+AATNTPQ+ G SER G+TL  + R +L D  FP SMW EL +TAAYL NR+PH  L   TP + LH +  DLS L VIGAR  VH +   KKL+  A + K+CG+  + ++YR+ NP    VVESRNVTFIE+
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGGSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIES 330
[Close]
BLAST of mRNA_H-elongata_contig165717.4142.1 vs. uniprot
Match: A0A6H5JSL6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSL6_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 6.480e-46
Identity = 111/292 (38.01%), Postives = 146/292 (50.00%), Query Frame = 1 
Query:  121 VANAQVWHRRLGHLHAQSLDILRKQYGTGITFEG--------------------------------VVLE----------------------------FRQYCLLTAKDQALQSLQLFVGLRVIPFRGRIVRWRADKSGEYTGEEFRQYYLETSIIQEFAATNTPQKSGVSERVGRTLCAIVRGMLADSGFPSSMWNELFMTAAYLKNRTPHKVLKMETPLNMLHGEEGDLSHLCVIGARTLVHIKD-SKKLEAAALKEKVCGYSKEGKSYRI*NPKTRRVVESRNVTFIET 813
            + +A  WHRRLGHL+A+SLDILRK  GTG+ +                                  VV++                             ++  LL  K    +++  +          RI   R DK GE TG EFR Y   ++I  E+AATNTPQ+ GVSER G+TL  + R +L D  FP SMW EL +TAAYL NR+PH  L   TP + LH +  DL  L VIGAR  VH +   KKL+  A + K+CG+  + ++YR+ NP    VVESRNVTFIE+
Sbjct:  235 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRSGQLVVIDNMGPANPPAKYQGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIEAIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLLGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIES 526
[Close]
BLAST of mRNA_H-elongata_contig165717.4142.1 vs. uniprot
Match: A0A6H5KCM0_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM0_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 8.810e-46
Identity = 110/292 (37.67%), Postives = 145/292 (49.66%), Query Frame = 1 
Query:  121 VANAQVWHRRLGHLHAQSLDILRKQYGTGITFEG--------------------------------VVLE----------------------------FRQYCLLTAKDQALQSLQLFVGLRVIPFRGRIVRWRADKSGEYTGEEFRQYYLETSIIQEFAATNTPQKSGVSERVGRTLCAIVRGMLADSGFPSSMWNELFMTAAYLKNRTPHKVLKMETPLNMLHGEEGDLSHLCVIGARTLVHIKDS-KKLEAAALKEKVCGYSKEGKSYRI*NPKTRRVVESRNVTFIET 813
            + +A  WHRRLGHL+A+SLDILRK  GTG+ +                                  VV++                             ++  LL  K    +++  +          RI   R DK GE TG EFR     ++I  E+AATNTPQ+ GVSER G+TL  + R +L D  FP SMW EL +TAAYL NR+PH  L   TP + LH +  DLS L VIGAR  VH +   KKL+  A + K+CG+  + ++YR+ NP     VESRNVTFIE+
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDNCKNSAIKLEYAATNTPQQLGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERCRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAGVESRNVTFIES 330
[Close]
BLAST of mRNA_H-elongata_contig165717.4142.1 vs. uniprot
Match: A0A6H5L4X4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4X4_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 3.070e-43
Identity = 96/198 (48.48%), Postives = 119/198 (60.10%), Query Frame = 1 
Query:  223 VVLEFRQYCLLTAKDQALQSLQLFVGLRVIPFRGRIVRWRADKSGEYTGEEFRQYYLETSIIQEFAATNTPQKSGVSERVGRTLCAIVRGMLADSGFPSSMWNELFMTAAYLKNRTPHKVLKMETPLNMLHGEEGDLSHLCVIGARTLVHIKD-SKKLEAAALKEKVCGYSKEGKSYRI*NPKTRRVVESRNVTFIET 813
            V    R+  LL  + +  Q+L  +  ++V     RI   R DK GE TGEE R Y  E++I  EFAATNTPQ+ GVSER G+TL A+ R +L D  FP  MW EL MTAAYL NRTPH  L   TP + ++    DLS L  IGAR  VH +   KKL+  A + K+CGY  + K+YRI      +V ESRNVTFIET
Sbjct:  251 VFTRMREVYLLRDRTETTQALHAY-NMQVASEGYRIEILRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLRAIGARAFVHHERYKKKLDDRAFEGKLCGYGPDSKTYRIYVEGKDKVYESRNVTFIET 447
[Close]
BLAST of mRNA_H-elongata_contig165717.4142.1 vs. uniprot
Match: A0A6H5KKW6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKW6_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 5.380e-43
Identity = 94/198 (47.47%), Postives = 118/198 (59.60%), Query Frame = 1 
Query:  223 VVLEFRQYCLLTAKDQALQSLQLFVGLRVIPFRGRIVRWRADKSGEYTGEEFRQYYLETSIIQEFAATNTPQKSGVSERVGRTLCAIVRGMLADSGFPSSMWNELFMTAAYLKNRTPHKVLKMETPLNMLHGEEGDLSHLCVIGARTLVHIKD-SKKLEAAALKEKVCGYSKEGKSYRI*NPKTRRVVESRNVTFIET 813
            V    R+  LL  + +  Q+L  +  ++V     RI   R DK GE TGEE R Y  E++I  EFAATNTPQ+ GVSER  +TL A+ R +L D  FP  MW EL MTAAYL NRTPH  L   TP + ++    DLS L  IGAR  VH +   KKL+  A + K+CGY  + K+YRI      ++ ESRNVTFIET
Sbjct:  103 VFTRMREVYLLRDRTETTQALHAY-NMQVASEGYRIEVLRCDKGGENTGEEMRNYCRESAIKPEFAATNTPQEIGVSERDSKTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLRAIGARAFVHHERFKKKLDDRAFEGKLCGYGPDSKTYRIYVEGKDKMYESRNVTFIET 299
[Close]
BLAST of mRNA_H-elongata_contig165717.4142.1 vs. uniprot
Match: A0A6H5KQ40_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ40_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 1.020e-42
Identity = 84/164 (51.22%), Postives = 107/164 (65.24%), Query Frame = 1 
Query:  325 RIVRWRADKSGEYTGEEFRQYYLETSIIQEFAATNTPQKSGVSERVGRTLCAIVRGMLADSGFPSSMWNELFMTAAYLKNRTPHKVLKMETPLNMLHGEEGDLSHLCVIGARTLVHIKD-SKKLEAAALKEKVCGYSKEGKSYRI*NPKTRRVVESRNVTFIET 813
            RI   R DK GE TG EFR Y   ++I  E+AATNTPQ+ G SER G+TL  + R +L D  FP SMW +L +TAAYL NR+PH  L   TP + LH +  DLS L VIGAR  VH +   KKL+  A + K+CG+  + ++YR+ NP    VVESRN+TFIE+
Sbjct:   10 RIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGESERDGQTLAGVTRCLLKDGDFPPSMWWQLMLTAAYLFNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNLTFIES 173
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig165717.4142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRJ1_9PHAE4.450e-4739.25Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K500_9PHAE5.050e-4738.36Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JJR8_9PHAE1.140e-4638.36Integrase catalytic domain-containing protein n=11... [more]
A0A6H5KCT3_9PHAE1.170e-4638.36Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K1R7_9PHAE6.450e-4638.01Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JSL6_9PHAE6.480e-4638.01Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCM0_9PHAE8.810e-4637.67Integrase catalytic domain-containing protein n=5 ... [more]
A0A6H5L4X4_9PHAE3.070e-4348.48Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KKW6_9PHAE5.380e-4347.47Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KQ40_9PHAE1.020e-4251.22Integrase catalytic domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig165717contigH-elongata_contig165717:68..1177 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score111.7
Seed ortholog evalue5e-22
Seed eggNOG ortholog3712.Bo5g132790.1
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3884B@33090,3GZ1B@35493,3HXH8@3699,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size813
Cds size756
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig165717.4142.1prot_H-elongata_contig165717.4142.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig165717 122..1174 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929970.4814692-UTR-H-elongata_contig165717:67..1211622929970.4814692-UTR-H-elongata_contig165717:67..121Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig165717 68..121 -
1691679228.963594-UTR-H-elongata_contig165717:67..1211691679228.963594-UTR-H-elongata_contig165717:67..121Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig165717 68..121 -
1622929970.5257359-UTR-H-elongata_contig165717:1174..11771622929970.5257359-UTR-H-elongata_contig165717:1174..1177Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig165717 1175..1177 -
1691679229.0015264-UTR-H-elongata_contig165717:1174..11771691679229.0015264-UTR-H-elongata_contig165717:1174..1177Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig165717 1175..1177 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929970.4935772-CDS-H-elongata_contig165717:121..7751622929970.4935772-CDS-H-elongata_contig165717:121..775Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165717 122..775 -
1691679228.9809-CDS-H-elongata_contig165717:121..7751691679228.9809-CDS-H-elongata_contig165717:121..775Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165717 122..775 -
1622929970.5117884-CDS-H-elongata_contig165717:1072..11741622929970.5117884-CDS-H-elongata_contig165717:1072..1174Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165717 1073..1174 -
1691679228.9905252-CDS-H-elongata_contig165717:1072..11741691679228.9905252-CDS-H-elongata_contig165717:1072..1174Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165717 1073..1174 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig165717.4142.1

>prot_H-elongata_contig165717.4142.1 ID=prot_H-elongata_contig165717.4142.1|Name=mRNA_H-elongata_contig165717.4142.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=252bp
MVDSGARGHYFDDAIIRDLKHRLQDYVQLATSRKLAMNAVANAQVWHRRL
GHLHAQSLDILRKQYGTGITFEGVVLEFRQYCLLTAKDQALQSLQLFVGL
RVIPFRGRIVRWRADKSGEYTGEEFRQYYLETSIIQEFAATNTPQKSGVS
ERVGRTLCAIVRGMLADSGFPSSMWNELFMTAAYLKNRTPHKVLKMETPL
NMLHGEEGDLSHLCVIGARTLVHIKDSKKLEAAALKEKVCGYSKEGKSYR
I*
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mRNA from alignment at H-elongata_contig165717:68..1177-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig165717.4142.1 ID=mRNA_H-elongata_contig165717.4142.1|Name=mRNA_H-elongata_contig165717.4142.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1110bp|location=Sequence derived from alignment at H-elongata_contig165717:68..1177- (Himanthalia elongata Himel1 dioecious)
ATCATGGTGGACAGCGGAGCGCGAGGACACTACTTCGACGACGCTATCAT
CCGTGACCTCAAGCATCGTCTTCAGGACTACGTGCAGCTCGCTACGTCCC
GCAAGGTTTTTACTGCAGGGGGGACTCTGCTGAACGGCACGGCGGAAGGC
GTGCTGCAAGAACTTGTCACCAACAACTACGGCGACCAAATTATCGTTCG
GATCGATATCGTGGTGGTGCCCAGGATTGGGCGCAACCTGTTCTCGGTGA
TAGCAGCAGCCAAAAAGAGCATTGCCACCATCTTTGACTTCAAAACTCCC
AGGCTGGAGGGATTAAACGTCACCGTGCCGCTCCTGAGCGAGAGCGGCAA
CCTCTACTCGTTCGTGCTGGACTTGATTGCAGACGGATATGGCGCCAAGA
AGTTAGCGATGAACGCAGTCGCCAATGCCCAGGTGTGGCATCGACGGCTG
GGTCACCTCCATGCGCAGAGCCTGGATATTCTACGCAAGCAATACGGCAC
TGGAATCACCTTTGAAGGGGTCGTTTTGGAGTTCCGGCAGTACTGCTTGT
TGACTGCTAAGGACCAAGCTCTTCAGTCGCTTCAACTGTTCGTCGGCTTG
AGAGTCATTCCCTTCCGCGGCCGCATTGTTCGTTGGCGCGCCGACAAGAG
CGGCGAGTACACCGGGGAGGAGTTCCGGCAGTACTACTTGGAGACCAGTA
TTATCCAAGAGTTTGCCGCAACCAATACGCCACAGAAAAGCGGTGTGTCC
GAACGAGTGGGGAGGACTCTGTGCGCGATAGTTCGGGGAATGCTCGCAGA
CAGCGGCTTCCCATCGTCCATGTGGAATGAGCTGTTCATGACGGCTGCGT
ATCTCAAGAACAGGACTCCGCACAAGGTGCTTAAGATGGAGACGCCGTTA
AACATGCTTCACGGCGAGGAAGGCGACCTCTCGCACCTTTGCGTTATCGG
AGCCAGAACCTTAGTGCACATCAAGGACTCTAAAAAGCTTGAAGCCGCGG
CTTTGAAAGAGAAGGTGTGCGGCTACAGTAAGGAGGGAAAATCCTACCGA
ATCTGAAACCCGAAGACTCGCCGCGTCGTGGAGAGCAGGAACGTCACCTT
CATCGAGACA
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Coding sequence (CDS) from alignment at H-elongata_contig165717:68..1177-

>mRNA_H-elongata_contig165717.4142.1 ID=mRNA_H-elongata_contig165717.4142.1|Name=mRNA_H-elongata_contig165717.4142.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1512bp|location=Sequence derived from alignment at H-elongata_contig165717:68..1177- (Himanthalia elongata Himel1 dioecious)
ATGGTGGACAGCGGAGCGCGAGGACACTACTTCGACGACGCTATCATCCG
TGACCTCAAGCATCGTCTTCAGGACTACGTGCAGCTCGCTACGTCCCGCA
AGATGGTGGACAGCGGAGCGCGAGGACACTACTTCGACGACGCTATCATC
CGTGACCTCAAGCATCGTCTTCAGGACTACGTGCAGCTCGCTACGTCCCG
CAAGTTAGCGATGAACGCAGTCGCCAATGCCCAGGTGTGGCATCGACGGC
TGGGTCACCTCCATGCGCAGAGCCTGGATATTCTACGCAAGCAATACGGC
ACTGGAATCACCTTTGAAGGGGTCGTTTTGGAGTTCCGGCAGTACTGCTT
GTTGACTGCTAAGGACCAAGCTCTTCAGTCGCTTCAACTGTTCGTCGGCT
TGAGAGTCATTCCCTTCCGCGGCCGCATTGTTCGTTGGCGCGCCGACAAG
AGCGGCGAGTACACCGGGGAGGAGTTCCGGCAGTACTACTTGGAGACCAG
TATTATCCAAGAGTTTGCCGCAACCAATACGCCACAGAAAAGCGGTGTGT
CCGAACGAGTGGGGAGGACTCTGTGCGCGATAGTTCGGGGAATGCTCGCA
GACAGCGGCTTCCCATCGTCCATGTGGAATGAGCTGTTCATGACGGCTGC
GTATCTCAAGAACAGGACTCCGCACAAGGTGCTTAAGATGGAGACGCCGT
TAAACATGCTTCACGGCGAGGAAGGCGACCTCTCGCACCTTTGCGTTATC
GGAGCCAGAACCTTAGTGCACATCAAGGACTCTAAAAAGCTTGAAGCCGC
GGCTTTGAAAGAGAAGGTGTGCGGCTACAGTAAGGAGGGAAAATCCTACC
GAATCTGATTAGCGATGAACGCAGTCGCCAATGCCCAGGTGTGGCATCGA
CGGCTGGGTCACCTCCATGCGCAGAGCCTGGATATTCTACGCAAGCAATA
CGGCACTGGAATCACCTTTGAAGGGGTCGTTTTGGAGTTCCGGCAGTACT
GCTTGTTGACTGCTAAGGACCAAGCTCTTCAGTCGCTTCAACTGTTCGTC
GGCTTGAGAGTCATTCCCTTCCGCGGCCGCATTGTTCGTTGGCGCGCCGA
CAAGAGCGGCGAGTACACCGGGGAGGAGTTCCGGCAGTACTACTTGGAGA
CCAGTATTATCCAAGAGTTTGCCGCAACCAATACGCCACAGAAAAGCGGT
GTGTCCGAACGAGTGGGGAGGACTCTGTGCGCGATAGTTCGGGGAATGCT
CGCAGACAGCGGCTTCCCATCGTCCATGTGGAATGAGCTGTTCATGACGG
CTGCGTATCTCAAGAACAGGACTCCGCACAAGGTGCTTAAGATGGAGACG
CCGTTAAACATGCTTCACGGCGAGGAAGGCGACCTCTCGCACCTTTGCGT
TATCGGAGCCAGAACCTTAGTGCACATCAAGGACTCTAAAAAGCTTGAAG
CCGCGGCTTTGAAAGAGAAGGTGTGCGGCTACAGTAAGGAGGGAAAATCC
TACCGAATCTGA
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