prot_H-elongata_contig165267.4108.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig165267.4108.1
Unique Nameprot_H-elongata_contig165267.4108.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length77
Homology
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BLAST of mRNA_H-elongata_contig165267.4108.1 vs. uniprot
Match: D8LKN7_ECTSI (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKN7_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 2.710e-27
Identity = 62/71 (87.32%), Postives = 65/71 (91.55%), Query Frame = 0 
Query:    5 RVLLRNKRLAEALGIRAALGAGAAIGGAKVGTTAEGATVAMGIGGGLDVIREHLERTNYSTFLVSWARYDR 75
            R LLRNKRLA+ALGIRAALGAGAAIGGAKVGTTA GATVAMGIG GLD IREHL RTNYST+LVSWAR +R
Sbjct:  595 RQLLRNKRLADALGIRAALGAGAAIGGAKVGTTASGATVAMGIGDGLDAIREHLTRTNYSTYLVSWARANR 665
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BLAST of mRNA_H-elongata_contig165267.4108.1 vs. uniprot
Match: A0A6H5JGR2_9PHAE (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGR2_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.280e-26
Identity = 61/71 (85.92%), Postives = 64/71 (90.14%), Query Frame = 0 
Query:    5 RVLLRNKRLAEALGIRAALGAGAAIGGAKVGTTAEGATVAMGIGGGLDVIREHLERTNYSTFLVSWARYDR 75
            R LLRNKRLA+ALGIRAALGAGAAIGGAKVGTTA GA VAMGIG GLD IREHL RTNYST+LVSWAR +R
Sbjct:  650 RQLLRNKRLADALGIRAALGAGAAIGGAKVGTTASGAAVAMGIGDGLDAIREHLTRTNYSTYLVSWARANR 720
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig165267.4108.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKN7_ECTSI2.710e-2787.32RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A6H5JGR2_9PHAE1.280e-2685.92RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig165267contigH-elongata_contig165267:45..1345 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig165267.4108.1mRNA_H-elongata_contig165267.4108.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig165267 45..1345 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig165267.4108.1 ID=prot_H-elongata_contig165267.4108.1|Name=mRNA_H-elongata_contig165267.4108.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
DDEKRVLLRNKRLAEALGIRAALGAGAAIGGAKVGTTAEGATVAMGIGGG
LDVIREHLERTNYSTFLVSWARYDRRQ
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