mRNA_H-elongata_contig165267.4108.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig165267.4108.1
Unique NamemRNA_H-elongata_contig165267.4108.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig165267.4108.1 vs. uniprot
Match: D8LKN7_ECTSI (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKN7_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 2.710e-27
Identity = 62/71 (87.32%), Postives = 65/71 (91.55%), Query Frame = 1 
Query:   13 RVLLRNKRLAEALGIRAALGAGAAIGGAKVGTTAEGATVAMGIGGGLDVIREHLERTNYSTFLVSWARYDR 225
            R LLRNKRLA+ALGIRAALGAGAAIGGAKVGTTA GATVAMGIG GLD IREHL RTNYST+LVSWAR +R
Sbjct:  595 RQLLRNKRLADALGIRAALGAGAAIGGAKVGTTASGATVAMGIGDGLDAIREHLTRTNYSTYLVSWARANR 665
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BLAST of mRNA_H-elongata_contig165267.4108.1 vs. uniprot
Match: A0A6H5JGR2_9PHAE (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGR2_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.280e-26
Identity = 61/71 (85.92%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:   13 RVLLRNKRLAEALGIRAALGAGAAIGGAKVGTTAEGATVAMGIGGGLDVIREHLERTNYSTFLVSWARYDR 225
            R LLRNKRLA+ALGIRAALGAGAAIGGAKVGTTA GA VAMGIG GLD IREHL RTNYST+LVSWAR +R
Sbjct:  650 RQLLRNKRLADALGIRAALGAGAAIGGAKVGTTASGAAVAMGIGDGLDAIREHLTRTNYSTYLVSWARANR 720
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig165267.4108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKN7_ECTSI2.710e-2787.32RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A6H5JGR2_9PHAE1.280e-2685.92RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig165267contigH-elongata_contig165267:45..1345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.8
Seed ortholog evalue6.9e-23
Seed eggNOG ortholog2880.D8LKN7
Preferred nameZNF598
KEGG koko:K22381
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006325,GO:0006412,GO:0006414,GO:0006417,GO:0006464,GO:0006513,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016043,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016740,GO:0019222,GO:0019538,GO:0019787,GO:0030163,GO:0031323,GO:0031326,GO:0032268,GO:0032446,GO:0034248,GO:0034641,GO:0034645,GO:0036205,GO:0036211,GO:0043021,GO:0043022,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0044877,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0051276,GO:0060255,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0071704,GO:0071840,GO:0072344,GO:0080090,GO:0097159,GO:0140096,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:2000112,GO:2000765
EggNOG free text desc.rescue of stalled ribosome
EggNOG OGsCOG5236@1,KOG2231@2759
EC2.3.2.27
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929967.2087817-CDS-H-elongata_contig165267:44..1431622929967.2087817-CDS-H-elongata_contig165267:44..143Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165267 45..143 +
1691679227.639438-CDS-H-elongata_contig165267:44..1431691679227.639438-CDS-H-elongata_contig165267:44..143Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165267 45..143 +
1622929967.2254198-CDS-H-elongata_contig165267:1213..13451622929967.2254198-CDS-H-elongata_contig165267:1213..1345Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165267 1214..1345 +
1691679227.651464-CDS-H-elongata_contig165267:1213..13451691679227.651464-CDS-H-elongata_contig165267:1213..1345Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165267 1214..1345 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig165267.4108.1prot_H-elongata_contig165267.4108.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig165267 45..1345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig165267.4108.1

>prot_H-elongata_contig165267.4108.1 ID=prot_H-elongata_contig165267.4108.1|Name=mRNA_H-elongata_contig165267.4108.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
DDEKRVLLRNKRLAEALGIRAALGAGAAIGGAKVGTTAEGATVAMGIGGG
LDVIREHLERTNYSTFLVSWARYDRRQ
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mRNA from alignment at H-elongata_contig165267:45..1345+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig165267.4108.1 ID=mRNA_H-elongata_contig165267.4108.1|Name=mRNA_H-elongata_contig165267.4108.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1301bp|location=Sequence derived from alignment at H-elongata_contig165267:45..1345+ (Himanthalia elongata Himel1 dioecious)
GATGACGAAAAGCGCGTGCTGCTGAGAAACAAGCGCCTAGCGGAAGCTCT
GGGCATCAGGGCGGCGCTCGGGGCTGGAGCGGCCATCGGGGGCGCCAAGG
TGGGGATTGATAATGTCATACGTAATGTGGTGATAATGTGATCAATTGAA
TAATTTACTGCTTGTGCAAAATATTTCTAAAATAACATATGAATACATGC
GAACCCTCCGAAGATCCACACCTTCTTAGCGCCGTGAGAGGTGCAGTCCA
GGGGACCAACTATCGTCAGGTTCGAATGTGGACATTACTACCTTTGAGCA
CAAAATCGTCACACTAATGATACATCGTATTCCCCACTAGTAAATTTATA
AAGTAAACGAAAAAATGTCAGGGATCCCATTATTATCCTTTATACTTATT
ACATTATTCATGACGTCATCATATGGGGACTATGACGCGAAACAGAGTAT
AGCCTAGAGAGTGAACTGTAGTTAGGAAGGAGTTGCTAGGTATAGTAGGT
GCATCACCCTTATATTGGATTTGTACACTTGCCTCCTGGACGGTATTAGC
TCTGTGTGTGGATTTTGATTGAATTGCACATAACCGCGCAATCCAGCCAT
CTCATGTTAGTCATTCCATCTAACAGGCTATTTTCGCATTCTATCTAACA
GGCTATTCAGGCTATTCGCATTGGTCCTTACAATGAGGGGAATCAATGAC
ATTTGTTTCGAAAACCTTTGATTAAAGGTGACAAAGGGGACATGCTCTCT
CTACCGTTCATATCTAAGTCCTCAAGCGTCTGGCGGCTTCCCATCCAGCA
GCCTTCAAGCGTCTCTATATAGCTTCGGTCGGCGCATATTGAACCAAAGC
CATTTTGGCTACACGCTTCTTCTCCCCTTTCTTCCCGCCCCTGGGCTTGC
CGCTGTAGATGTGTGTGGGGGTGTTTATTTTAGAAAACTGGGGGAAGCTT
CGACCTTTGAAGGCAATATGCTTGTTGAACACCAAGCTCAAGATGCCTGA
GATATCCCGAACGAAGACTAGGAGATATTAAGCTTTTGAGGTATCCCGTT
TGAGTATCAGCCCAGCAAAACCCCCCCACTGTTTTGCGTCTTGGAAACGA
GCATATTTTTTCTCTCTCTTCAATTTCAAGACATTTCAGTCGAGGCGGTC
GGTTTTCCATCATGTTCAGGTGGGCACTACTGCGGAGGGGGCGACGGTTG
CGATGGGCATCGGCGGCGGACTAGACGTCATTCGGGAGCACCTCGAGAGG
ACCAACTACTCCACTTTTTTGGTCTCGTGGGCGAGGTACGATAGACGACA
G
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Coding sequence (CDS) from alignment at H-elongata_contig165267:45..1345+

>mRNA_H-elongata_contig165267.4108.1 ID=mRNA_H-elongata_contig165267.4108.1|Name=mRNA_H-elongata_contig165267.4108.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig165267:45..1345+ (Himanthalia elongata Himel1 dioecious)
GATGACGAAAAGCGCGTGCTGCTGAGAAACAAGCGCCTAGCGGAAGCTCT
GGGCATCAGGGCGGCGCTCGGGGCTGGAGCGGCCATCGGGGGCGCCAAGG
ATGACGAAAAGCGCGTGCTGCTGAGAAACAAGCGCCTAGCGGAAGCTCTG
GGCATCAGGGCGGCGCTCGGGGCTGGAGCGGCCATCGGGGGCGCCAAGGT
GGGCACTACTGCGGAGGGGGCGACGGTTGCGATGGGCATCGGCGGCGGAC
TAGACGTCATTCGGGAGCACCTCGAGAGGACCAACTACTCCACTTTTTTG
GTCTCGTGGGCGAGGTACGATAGACGACAGGTGGGCACTACTGCGGAGGG
GGCGACGGTTGCGATGGGCATCGGCGGCGGACTAGACGTCATTCGGGAGC
ACCTCGAGAGGACCAACTACTCCACTTTTTTGGTCTCGTGGGCGAGGTAC
GATAGACGACAG
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