prot_H-elongata_contig16281.3985.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig16281.3985.1
Unique Nameprot_H-elongata_contig16281.3985.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length198
Homology
BLAST of mRNA_H-elongata_contig16281.3985.1 vs. uniprot
Match: A0A6H5JQV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQV6_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 2.960e-58
Identity = 99/192 (51.56%), Postives = 131/192 (68.23%), Query Frame = 0
Query:    1 MTGYLRQFAPNYSTLVAPIPDLLRDPRFRSKRSRRMSVPWEKEQTRAFLVLIECLASLAILALPDWGKGFQLHADASETGAGAVLTQQQGSPALEKVIAFESRRWSKTDALRSPTDRECMGVMWNVAKFQPYRWGRPFMLIIDCSALIWLFKSQALSPKYHRWALRFMEHDMTLKWQHDTQNQVVEAMARLP 192
            +TGYLRQF PNYS   AP+ ++LR+  F SKR+R++ +PW   +  AF  L E LAS  +LA PD  + F+LH DAS  G GA L Q      + + +AF S R+S+TDA R PT+RECMGV+W V  F+PY  GR F L+ DCSAL WLF+S+ L PK HRWALR ME+DM L+W+   ++ V +A++RLP
Sbjct:  391 LTGYLRQFVPNYSLTAAPLTNILRNKAFASKRARKLPIPWSVAEEDAFQSLRETLASPKVLAFPDLERPFELHTDASTLGVGASLMQTIDG--VTRAVAFASHRFSQTDARRGPTERECMGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRSRELCPKLHRWALRLMEYDMELEWKAGVEHVVPDALSRLP 580          
BLAST of mRNA_H-elongata_contig16281.3985.1 vs. uniprot
Match: A0A6H5JIH2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIH2_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 6.080e-58
Identity = 95/192 (49.48%), Postives = 128/192 (66.67%), Query Frame = 0
Query:    1 MTGYLRQFAPNYSTLVAPIPDLLRDPRFRSKRSRRMSVPWEKEQTRAFLVLIECLASLAILALPDWGKGFQLHADASETGAGAVLTQQQGSPALEKVIAFESRRWSKTDALRSPTDRECMGVMWNVAKFQPYRWGRPFMLIIDCSALIWLFKSQALSPKYHRWALRFMEHDMTLKWQHDTQNQVVEAMARLP 192
            +TGYLRQF PNYS   AP+ ++LR+  F SKR+R++ + W   +  AF  L E LAS  +LA PD  + F+LH DAS  G GA L Q      + + +AF S R+S+TDA R  T+RECMGV+W V  F+PY  GR F L+ DCSAL WLF+S+ L P  HRWALR ME+D+ L+W+   ++ V +A++RLP
Sbjct:  119 LTGYLRQFVPNYSLTAAPLANILRNKAFASKRARKLPIQWSAAEEDAFQYLRETLASPKVLAFPDLERPFELHTDASTLGVGASLMQTIDG--VTRAVAFASHRFSQTDARRGHTERECMGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRSRELCPTLHRWALRLMEYDLELEWKAGVEHVVPDALSRLP 308          
BLAST of mRNA_H-elongata_contig16281.3985.1 vs. uniprot
Match: A0A6H5KIS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIS6_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 3.830e-57
Identity = 96/192 (50.00%), Postives = 129/192 (67.19%), Query Frame = 0
Query:    1 MTGYLRQFAPNYSTLVAPIPDLLRDPRFRSKRSRRMSVPWEKEQTRAFLVLIECLASLAILALPDWGKGFQLHADASETGAGAVLTQQQGSPALEKVIAFESRRWSKTDALRSPTDRECMGVMWNVAKFQPYRWGRPFMLIIDCSALIWLFKSQALSPKYHRWALRFMEHDMTLKWQHDTQNQVVEAMARLP 192
            +TGYLRQF PNYS   AP+ ++LR+  F SKR+R++ +PW   +  AF  L E LAS  +LA PD  + F+LH DAS  G GA L Q      + + +AF + R+ +TDA R  T+RECMGV+W V  F+PY  GR F L+ DCSAL WLF+S+ L PK HRWALR ME+DM L+W+   ++ V +A++RLP
Sbjct:  251 LTGYLRQFVPNYSLTAAPLTNILRNKAFASKRARKLPIPWSVAEEDAFQSLRETLASPKVLAFPDLERPFELHTDASTLGVGASLMQTIDG--VTRAVAFANHRFLQTDARRGLTERECMGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRSRELCPKLHRWALRLMEYDMELEWKAGVEHVVPDALSRLP 440          
BLAST of mRNA_H-elongata_contig16281.3985.1 vs. uniprot
Match: A0A6H5KFK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFK7_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 4.830e-57
Identity = 99/192 (51.56%), Postives = 131/192 (68.23%), Query Frame = 0
Query:    1 MTGYLRQFAPNYSTLVAPIPDLLRDPRFRSKRSRRMSVPWEKEQTRAFLVLIECLASLAILALPDWGKGFQLHADASETGAGAVLTQQQGSPALEKVIAFESRRWSKTDALRSPTDRECMGVMWNVAKFQPYRWGRPFMLIIDCSALIWLFKSQALSPKYHRWALRFMEHDMTLKWQHDTQNQVVEAMARLP 192
            +TGYLRQF PNYS   AP+ ++LR+  F SKR+R++ +PW   +  AF  L E LAS  +LA PD  + F+LH DAS  G GA L Q      + + +AF S R+S+TDA R PT+RECMGV+W V  F+PY  GR F L+ DCSAL WLF+S+ L PK HRWALR ME+DM L+W+   ++ V +A++RLP
Sbjct:  393 LTGYLRQFVPNYSLTAAPLTNILRNKAFASKRARKLPIPWSVAEEDAFQSLRETLASPKVLAFPDLERPFELHTDASTLGVGASLMQTIDG--VTRAVAFASHRFSQTDARRGPTERECMGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRSRELCPKLHRWALRLMEYDMELEWKAGVEHVVPDALSRLP 582          
BLAST of mRNA_H-elongata_contig16281.3985.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 7.270e-57
Identity = 99/192 (51.56%), Postives = 131/192 (68.23%), Query Frame = 0
Query:    1 MTGYLRQFAPNYSTLVAPIPDLLRDPRFRSKRSRRMSVPWEKEQTRAFLVLIECLASLAILALPDWGKGFQLHADASETGAGAVLTQQQGSPALEKVIAFESRRWSKTDALRSPTDRECMGVMWNVAKFQPYRWGRPFMLIIDCSALIWLFKSQALSPKYHRWALRFMEHDMTLKWQHDTQNQVVEAMARLP 192
            +TGYLRQF PNYS   AP+ ++LR+  F SKR+R++ +PW   +  AF  L E LAS  +LA PD  + F+LH DAS  G GA L Q      + + +AF S R+S+TDA R PT+RECMGV+W V  F+PY  GR F L+ DCSAL WLF+S+ L PK HRWALR ME+DM L+W+   ++ V +A++RLP
Sbjct:  915 LTGYLRQFVPNYSLTAAPLTNILRNKAFASKRARKLPIPWSVAEEDAFQSLRETLASPKVLAFPDLERPFELHTDASTLGVGASLMQTIDG--VTRAVAFASHRFSQTDARRGPTERECMGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRSRELCPKLHRWALRLMEYDMELEWKAGVEHVVPDALSRLP 1104          
BLAST of mRNA_H-elongata_contig16281.3985.1 vs. uniprot
Match: A0A6H5KBF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF4_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 3.550e-50
Identity = 94/194 (48.45%), Postives = 130/194 (67.01%), Query Frame = 0
Query:    7 QFAPNYSTLVA-PIPDLLRDPRFRSKRSRRMSVPWEKEQTRAFLVLIECLASLAILALPDWGKGFQLHADASETGAGAVLTQQ-QGSPALEKVIAFESRRWSKTDALRSPTDRECMGVMWNVAKFQPYRWGRPFMLIIDCSALIWLFKSQALSPKYHRWALRFMEHDMTLKWQHDTQNQVVEAMARLPREGEPS 198
            Q   +  TLVA P+ D+LR+  F SKR+R++ + W + +  AF  L +CLAS  +LA PD    F+LH+DAS  GAGA L Q   G+P   ++IAF S ++S+TDA R PT+RECMGV+W V  F+PY  GR F ++ DCSAL WLF+S+ L PK HRWALR ME+D+ L+W+    + + +A++RLP    PS
Sbjct:  542 QTVEDLRTLVAAPLTDILRNKDFASKRARKLPIQWGQAEEHAFHHLRQCLASPTVLAFPDPNAPFELHSDASSVGAGATLLQTIDGTP---RIIAFASHKFSRTDARRGPTERECMGVLWGVDHFKPYLAGRQFKVVTDCSALTWLFRSRELCPKLHRWALRLMEYDIGLEWRAGVHHVLPDALSRLPVASSPS 732          
BLAST of mRNA_H-elongata_contig16281.3985.1 vs. uniprot
Match: A0A6H5LHQ7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHQ7_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 5.820e-47
Identity = 89/193 (46.11%), Postives = 119/193 (61.66%), Query Frame = 0
Query:    1 MTGYLRQFAPNYSTLVAPIPDLLRDPRFRSKRSRRMSVPWEKEQTRAFLVLIECLASLAILALPDWGKGFQLHADASETGAGAVLTQQQGSPALEKVIAFESRRWSKTDALRSPTDRECMGVMWNVAKFQPYRWGRPFMLIIDCSALIWLFKSQALSPKYHRWALRFMEHDMTLKWQHDTQNQVVEAMARLPR 193
            + GYLR F P++STL API DLLRD  F SKR+R   VPW   Q  AF  +I+ L +  +LA PDW   F LH DASE  AGAVLTQ   +   E  + + S R+++ +   S  DRE +GV++ + +F  Y   R F L+ DC+AL WLF SQ LS K HRW+LR M+ D+ LKW+    +   +A++RL R
Sbjct:  358 LAGYLRGFVPDFSTLTAPITDLLRDKAFSSKRARNRRVPWGAAQIEAFQAVIKALVTHPVLAAPDWHLPFTLHTDASELAAGAVLTQPVEN--REAPLGYASHRFTRAEEKLSANDREVLGVLYGIEQFHTYLQHRRFTLVTDCAALTWLFTSQNLSSKMHRWSLRLMQFDIDLKWRKGEDHTAPDALSRLRR 548          
BLAST of mRNA_H-elongata_contig16281.3985.1 vs. uniprot
Match: A0A6H5KHG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG6_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 6.270e-47
Identity = 86/197 (43.65%), Postives = 127/197 (64.47%), Query Frame = 0
Query:    1 MTGYLRQFAPNYSTLVAPIPDLLRDPRFRSKRSRRMSVPWEKEQTRAFLVLIECLASLAILALPDWGKGFQLHADASETGAGAVLTQQQGSPALEKVIAFESRRWSKTDALRSPTDRECMGVMWNVAKFQPYRWGRPFMLIIDCSALIWLFKSQALSPKYHRWALRFMEHDMTLKWQHDTQNQVVEAMARLPREGEP 197
            M  +LR F  ++S +VAP+ D+LR+  F +KR+R +++PW +EQ  A   +I  L S  +L  PDW   F LH DASE  AGAVLTQ       +  I F S RW++++A R+PTDRE    ++ +  F+ Y   +PF L+ DCSA+ WLF+SQ LS   +R+ALR ME  MTL+W+  T++ + +A++RLP++G P
Sbjct: 1052 MANFLRDFVKDFSAIVAPLTDILRNKDFSTKRARNLAIPWGEEQDAAHDAIIRALVSPPVLLPPDWELPFTLHTDASERAAGAVLTQVVEDH--DTAIGFGSHRWTQSEAKRAPTDREVRAALFGLEHFRIYLLHQPFTLVTDCSAITWLFQSQHLSSTMYRYALRMMEFTMTLQWRKGTEHTIPDALSRLPQKGPP 1246          
BLAST of mRNA_H-elongata_contig16281.3985.1 vs. uniprot
Match: A0A6H5K9Z4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Z4_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 6.110e-46
Identity = 83/161 (51.55%), Postives = 107/161 (66.46%), Query Frame = 0
Query:    1 MTGYLRQFAPNYSTLVAPIPDLLRDPRFRSKRSRRMSVPWEKEQTRAFLVLIECLASLAILALPDWGKGFQLHADASETGAGAVLTQQQGSPALEKVIAFESRRWSKTDALRSPTDRECMGVMWNVAKFQPYRWGRPFMLIIDCSALIWLFKSQALSPKYH 161
            +TGYLRQF PNYS   AP+ ++LR+  F SKR+R++ +PW   +  AF  L E LAS  +LA PD  + F+LH DAS  G GA L Q      + + +AF S R+S+TDA R PT+RECMGV+W V  F+PY  GR F L+ DCSAL WLF+S+ L PK H
Sbjct:  207 LTGYLRQFVPNYSLTAAPLTNILRNKAFASKRARKLPIPWSVAEEDAFQSLRETLASPKVLAFPDLERPFELHTDASTLGVGASLMQTIDG--VTRAVAFASHRFSQTDARRGPTERECMGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRSRELCPKLH 365          
BLAST of mRNA_H-elongata_contig16281.3985.1 vs. uniprot
Match: A0A6H5JF70_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF70_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 2.650e-45
Identity = 86/195 (44.10%), Postives = 123/195 (63.08%), Query Frame = 0
Query:    1 MTGYLRQFAPNYSTLVAPIPDLLRDPRFRSKRSRRMSVPWEKEQTRAFLVLIECLASLAILALPDWGKGFQLHADASETGAGAVLTQQQGSPALEKVIAFESRRWSKTDALRSPTDRECMGVMWNVAKFQPYRWGRPFMLIIDCSALIWLFKSQALSPKYHRWALRFMEHDMTLKWQHDTQNQVVEAMARLPREG 195
            +  YLR F PN+S + AP+ D+LR+  F SKR+R   V     Q  A++ L+E L +  +L LP+W + F LH DAS   AG+VLTQQ  +   E  + + S+R S+++   S  DRE +GV++ +  F+ Y   R F LI DC+AL+WLF SQ LS K HRWAL+ M +DM LKW+  T + V +A++RL R+G
Sbjct:  326 LANYLRGFVPNFSAIAAPLSDILRNKEFSSKRARNKRVVMGPPQIEAYMKLVEKLTTYPVLVLPNWLEPFTLHTDASLIAAGSVLTQQVEN--REAPVGYASKRLSRSEEKLSSNDREVLGVLYALEHFKVYLQHRQFTLITDCAALMWLFTSQKLSSKMHRWALKMMAYDMVLKWRKGTDHVVPDALSRLRRKG 518          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16281.3985.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQV6_9PHAE2.960e-5851.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIH2_9PHAE6.080e-5849.48Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KIS6_9PHAE3.830e-5750.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFK7_9PHAE4.830e-5751.56Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KEH2_9PHAE7.270e-5751.56RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A6H5KBF4_9PHAE3.550e-5048.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LHQ7_9PHAE5.820e-4746.11Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KHG6_9PHAE6.270e-4743.65Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K9Z4_9PHAE6.110e-4651.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF70_9PHAE2.650e-4544.10Reverse transcriptase domain-containing protein n=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.20.370coord: 62..177
e-value: 4.4E-39
score: 136.2
NoneNo IPR availableGENE3D3.30.70.270coord: 3..190
e-value: 4.4E-39
score: 136.2
NoneNo IPR availablePANTHERPTHR24559:SF222coord: 1..194
NoneNo IPR availablePANTHERPTHR24559FAMILY NOT NAMEDcoord: 1..194
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 64..133
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..44
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 152..198
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 45..63
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 134..151
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 1..176
IPR041577Reverse transcriptase/retrotransposon-derived protein, RNase H-like domainPFAMPF17919RT_RNaseH_2coord: 40..139
e-value: 2.3E-24
score: 85.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16281contigH-elongata_contig16281:6406..6999 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16281.3985.1mRNA_H-elongata_contig16281.3985.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig16281 6406..7419 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig16281.3985.1 ID=prot_H-elongata_contig16281.3985.1|Name=mRNA_H-elongata_contig16281.3985.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=198bp
MTGYLRQFAPNYSTLVAPIPDLLRDPRFRSKRSRRMSVPWEKEQTRAFLV
LIECLASLAILALPDWGKGFQLHADASETGAGAVLTQQQGSPALEKVIAF
ESRRWSKTDALRSPTDRECMGVMWNVAKFQPYRWGRPFMLIIDCSALIWL
FKSQALSPKYHRWALRFMEHDMTLKWQHDTQNQVVEAMARLPREGEPS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR041577RT_RNaseH_2