mRNA_H-elongata_contig16281.3985.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16281.3985.1
Unique NamemRNA_H-elongata_contig16281.3985.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig16281.3985.1 vs. uniprot
Match: A0A6H5JQV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQV6_9PHAE)

HSP 1 Score: 295 bits (755), Expect = 3.920e-91
Identity = 153/332 (46.08%), Postives = 203/332 (61.14%), Query Frame = 1
Query:    1 QLGIHEDERHLTAFRDADGKLWQCVRCGVGLKTVPSAFANYAGGRLMPVKCRGIRNWLDDFAIPSRVVRGHWPLLRTTFQCLNEGKLTVNLQNSKFCQPGLEFVGMVVDRKKNRPSPSMIDAVT*LSRPTIVEEVRVLLGMTGYLRQFAPNYSTLVAPIPDLLRDPRFRSKRSRRMSVPWEKEQTRAFLVLIECLASLAILALPDWGKGFQLHADASETGAGAVLTQQQGSPALEKVIAFESRRWSKTDALRSPTDRECMGVMWNVAKFQPYRWGRPFMLIIDCSALIWLFKSQALSPKYHRWALRFMEHDMTLKWQHDTQNQVVEAMARLP 996
            Q+ I E +R+ TAFRDADG LW+  R G GL  +P+AF       L  +   G+ +WLDD  I S     H   L      L    L+VN     F     EF+GM++D     P+PS +DA+  + RP  VEE+R  LG+TGYLRQF PNYS   AP+ ++LR+  F SKR+R++ +PW   +  AF  L E LAS  +LA PD  + F+LH DAS  G GA L Q      + + +AF S R+S+TDA R PT+RECMGV+W V  F+PY  GR F L+ DCSAL WLF+S+ L PK HRWALR ME+DM L+W+   ++ V +A++RLP
Sbjct:  253 QMEIAEKDRYKTAFRDADGMLWEFTRAGFGLTVLPAAFTRRVKSALGHLA--GVFSWLDDILIASDSWEEHLATLTLVLNRLLAAGLSVNFAKCIFGAASQEFLGMIIDSTGLYPAPSKLDAIARMPRPHTVEELRTFLGLTGYLRQFVPNYSLTAAPLTNILRNKAFASKRARKLPIPWSVAEEDAFQSLRETLASPKVLAFPDLERPFELHTDASTLGVGASLMQTIDG--VTRAVAFASHRFSQTDARRGPTERECMGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRSRELCPKLHRWALRLMEYDMELEWKAGVEHVVPDALSRLP 580          
BLAST of mRNA_H-elongata_contig16281.3985.1 vs. uniprot
Match: A0A6H5KIS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIS6_9PHAE)

HSP 1 Score: 288 bits (738), Expect = 5.560e-91
Identity = 150/332 (45.18%), Postives = 201/332 (60.54%), Query Frame = 1
Query:    1 QLGIHEDERHLTAFRDADGKLWQCVRCGVGLKTVPSAFANYAGGRLMPVKCRGIRNWLDDFAIPSRVVRGHWPLLRTTFQCLNEGKLTVNLQNSKFCQPGLEFVGMVVDRKKNRPSPSMIDAVT*LSRPTIVEEVRVLLGMTGYLRQFAPNYSTLVAPIPDLLRDPRFRSKRSRRMSVPWEKEQTRAFLVLIECLASLAILALPDWGKGFQLHADASETGAGAVLTQQQGSPALEKVIAFESRRWSKTDALRSPTDRECMGVMWNVAKFQPYRWGRPFMLIIDCSALIWLFKSQALSPKYHRWALRFMEHDMTLKWQHDTQNQVVEAMARLP 996
            Q+ I E +R+ TAFRDADG LW+  R G GL  +P+AF       L  +   G+ +WLDD  I S     H   L      L    L+VN     F     EF+GM++D     P+PS +DA+  + RP  VEE+R  LG+TGYLRQF PNYS   AP+ ++LR+  F SKR+R++ +PW   +  AF  L E LAS  +LA PD  + F+LH DAS  G GA L Q      + + +AF + R+ +TDA R  T+RECMGV+W V  F+PY  GR F L+ DCSAL WLF+S+ L PK HRWALR ME+DM L+W+   ++ V +A++RLP
Sbjct:  113 QMEIAEKDRYKTAFRDADGMLWEFTRAGFGLTVLPAAFTRRVKSALGHLA--GVFSWLDDILIASDSWEEHLATLTLVLNRLLAAGLSVNFAKCPFGAASQEFLGMIIDSTGLYPAPSKLDAIARMPRPHTVEELRTFLGLTGYLRQFVPNYSLTAAPLTNILRNKAFASKRARKLPIPWSVAEEDAFQSLRETLASPKVLAFPDLERPFELHTDASTLGVGASLMQTIDG--VTRAVAFANHRFLQTDARRGLTERECMGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRSRELCPKLHRWALRLMEYDMELEWKAGVEHVVPDALSRLP 440          
BLAST of mRNA_H-elongata_contig16281.3985.1 vs. uniprot
Match: A0A6H5KFK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFK7_9PHAE)

HSP 1 Score: 295 bits (755), Expect = 1.730e-88
Identity = 153/332 (46.08%), Postives = 203/332 (61.14%), Query Frame = 1
Query:    1 QLGIHEDERHLTAFRDADGKLWQCVRCGVGLKTVPSAFANYAGGRLMPVKCRGIRNWLDDFAIPSRVVRGHWPLLRTTFQCLNEGKLTVNLQNSKFCQPGLEFVGMVVDRKKNRPSPSMIDAVT*LSRPTIVEEVRVLLGMTGYLRQFAPNYSTLVAPIPDLLRDPRFRSKRSRRMSVPWEKEQTRAFLVLIECLASLAILALPDWGKGFQLHADASETGAGAVLTQQQGSPALEKVIAFESRRWSKTDALRSPTDRECMGVMWNVAKFQPYRWGRPFMLIIDCSALIWLFKSQALSPKYHRWALRFMEHDMTLKWQHDTQNQVVEAMARLP 996
            Q+ I E +R+ TAFRDADG LW+  R G GL  +P+AF       L  +   G+ +WLDD  I S     H   L      L    L+VN     F     EF+GM++D     P+PS +DA+  + RP  VEE+R  LG+TGYLRQF PNYS   AP+ ++LR+  F SKR+R++ +PW   +  AF  L E LAS  +LA PD  + F+LH DAS  G GA L Q      + + +AF S R+S+TDA R PT+RECMGV+W V  F+PY  GR F L+ DCSAL WLF+S+ L PK HRWALR ME+DM L+W+   ++ V +A++RLP
Sbjct:  255 QMEIAEKDRYKTAFRDADGMLWEFTRAGFGLTVLPAAFTRRVKSALGHLA--GVFSWLDDILIASDSWEEHLATLTLVLNRLLAAGLSVNFAKCIFGAASQEFLGMIIDSTGLYPAPSKLDAIARMPRPHTVEELRTFLGLTGYLRQFVPNYSLTAAPLTNILRNKAFASKRARKLPIPWSVAEEDAFQSLRETLASPKVLAFPDLERPFELHTDASTLGVGASLMQTIDG--VTRAVAFASHRFSQTDARRGPTERECMGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRSRELCPKLHRWALRLMEYDMELEWKAGVEHVVPDALSRLP 582          
BLAST of mRNA_H-elongata_contig16281.3985.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE)

HSP 1 Score: 295 bits (755), Expect = 1.030e-86
Identity = 153/332 (46.08%), Postives = 203/332 (61.14%), Query Frame = 1
Query:    1 QLGIHEDERHLTAFRDADGKLWQCVRCGVGLKTVPSAFANYAGGRLMPVKCRGIRNWLDDFAIPSRVVRGHWPLLRTTFQCLNEGKLTVNLQNSKFCQPGLEFVGMVVDRKKNRPSPSMIDAVT*LSRPTIVEEVRVLLGMTGYLRQFAPNYSTLVAPIPDLLRDPRFRSKRSRRMSVPWEKEQTRAFLVLIECLASLAILALPDWGKGFQLHADASETGAGAVLTQQQGSPALEKVIAFESRRWSKTDALRSPTDRECMGVMWNVAKFQPYRWGRPFMLIIDCSALIWLFKSQALSPKYHRWALRFMEHDMTLKWQHDTQNQVVEAMARLP 996
            Q+ I E +R+ TAFRDADG LW+  R G GL  +P+AF       L  +   G+ +WLDD  I S     H   L      L    L+VN     F     EF+GM++D     P+PS +DA+  + RP  VEE+R  LG+TGYLRQF PNYS   AP+ ++LR+  F SKR+R++ +PW   +  AF  L E LAS  +LA PD  + F+LH DAS  G GA L Q      + + +AF S R+S+TDA R PT+RECMGV+W V  F+PY  GR F L+ DCSAL WLF+S+ L PK HRWALR ME+DM L+W+   ++ V +A++RLP
Sbjct:  777 QMEIAEKDRYKTAFRDADGMLWEFTRAGFGLTVLPAAFTRRVKSALGHLA--GVFSWLDDILIASDSWEEHLATLTLVLNRLLAAGLSVNFAKCIFGAASQEFLGMIIDSTGLYPAPSKLDAIARMPRPHTVEELRTFLGLTGYLRQFVPNYSLTAAPLTNILRNKAFASKRARKLPIPWSVAEEDAFQSLRETLASPKVLAFPDLERPFELHTDASTLGVGASLMQTIDG--VTRAVAFASHRFSQTDARRGPTERECMGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRSRELCPKLHRWALRLMEYDMELEWKAGVEHVVPDALSRLP 1104          
BLAST of mRNA_H-elongata_contig16281.3985.1 vs. uniprot
Match: A0A6H5LHQ7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHQ7_9PHAE)

HSP 1 Score: 285 bits (730), Expect = 1.050e-84
Identity = 148/334 (44.31%), Postives = 199/334 (59.58%), Query Frame = 1
Query:    1 QLGIHEDERHLTAFRDADGKLWQCVRCGVGLKTVPSAFANYAGGRLMPVKCRG-IRNWLDDFAIPSRVVRGHWPLLRTTFQCLNEGKLTVNLQNSKFCQPGLEFVGMVVDRKKNRPSPSMIDAVT*LSRPTIVEEVRVLLGMTGYLRQFAPNYSTLVAPIPDLLRDPRFRSKRSRRMSVPWEKEQTRAFLVLIECLASLAILALPDWGKGFQLHADASETGAGAVLTQQQGSPALEKVIAFESRRWSKTDALRSPTDRECMGVMWNVAKFQPYRWGRPFMLIIDCSALIWLFKSQALSPKYHRWALRFMEHDMTLKWQHDTQNQVVEAMARLPR 999
            QL I E +RH TAFRDA G+L++  RCG GL T+P+ F+ + G  L P + +G +  WLDD  + S  +  H  L+   F  L     +V+ + S FC   +EF+G +V R   RP+PS I AV  L  P  V EVR  LG+ GYLR F P++STL API DLLRD  F SKR+R   VPW   Q  AF  +I+ L +  +LA PDW   F LH DASE  AGAVLTQ   +   E  + + S R+++ +   S  DRE +GV++ + +F  Y   R F L+ DC+AL WLF SQ LS K HRW+LR M+ D+ LKW+    +   +A++RL R
Sbjct:  217 QLSIKEADRHKTAFRDARGRLYEFTRCGFGLTTIPAVFSAHLGDTLRPTENKGGVERWLDDILLHSATLEEHMALIEEVFDLLQGVGYSVHFKKSMFCMSEVEFLGAMVGRSGVRPAPSKIRAVQELEMPATVGEVRAFLGLAGYLRGFVPDFSTLTAPITDLLRDKAFSSKRARNRRVPWGAAQIEAFQAVIKALVTHPVLAAPDWHLPFTLHTDASELAAGAVLTQPVEN--REAPLGYASHRFTRAEEKLSANDREVLGVLYGIEQFHTYLQHRRFTLVTDCAALTWLFTSQNLSSKMHRWSLRLMQFDIDLKWRKGEDHTAPDALSRLRR 548          
BLAST of mRNA_H-elongata_contig16281.3985.1 vs. uniprot
Match: A0A6H5JF70_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF70_9PHAE)

HSP 1 Score: 267 bits (683), Expect = 6.120e-81
Identity = 137/335 (40.90%), Postives = 202/335 (60.30%), Query Frame = 1
Query:    1 QLGIHEDERHLTAFRDADGKLWQCVRCGVGLKTVPSAFANYAGGRLMPVKCRGIRNWLDDFAIPSRVVRGHWPLLRTTFQCLNEGKLTVNLQNSKFCQPGLEFVGMVVDRKKNRPSPSMIDAVT*LSRPTIVEEVRVLLGMTGYLRQFAPNYSTLVAPIPDLLRDPRFRSKRSRRMSVPWEKEQTRAFLVLIECLASLAILALPDWGKGFQLHADASETGAGAVLTQQQGSPALEKVIAFESRRWSKTDALRSPTDRECMGVMWNVAKFQPYRWGRPFMLIIDCSALIWLFKSQALSPKYHRWALRFMEHDMTLKWQHDTQNQVVEAMARLPREG 1005
            QL + E ++H TAFRD  G+L +  RC  G+ T+P+ F+   G  L  +  +G+  WLDD A+ ++ +  H+ LL      L +   T +   S+F  P LEF+G++V R   RP+PS + AV  +  P+ V E+R  LG+  YLR F PN+S + AP+ D+LR+  F SKR+R   V     Q  A++ L+E L +  +L LP+W + F LH DAS   AG+VLTQQ  +   E  + + S+R S+++   S  DRE +GV++ +  F+ Y   R F LI DC+AL+WLF SQ LS K HRWAL+ M +DM LKW+  T + V +A++RL R+G
Sbjct:  186 QLELEETDKHKTAFRDPTGRLLESNRCAFGITTIPAVFSATLGDDLRELLGKGLEKWLDDIALHTKTLEEHFVLLEKVLTILKQKGYTGHFVKSEFLLPELEFLGVMVGRDGTRPAPSKVKAVQEMELPSTVGELRSFLGLANYLRGFVPNFSAIAAPLSDILRNKEFSSKRARNKRVVMGPPQIEAYMKLVEKLTTYPVLVLPNWLEPFTLHTDASLIAAGSVLTQQVEN--REAPVGYASKRLSRSEEKLSSNDREVLGVLYALEHFKVYLQHRQFTLITDCAALMWLFTSQKLSSKMHRWALKMMAYDMVLKWRKGTDHVVPDALSRLRRKG 518          
BLAST of mRNA_H-elongata_contig16281.3985.1 vs. uniprot
Match: A0A6H5KHG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG6_9PHAE)

HSP 1 Score: 275 bits (704), Expect = 6.240e-80
Identity = 140/338 (41.42%), Postives = 204/338 (60.36%), Query Frame = 1
Query:    1 QLGIHEDERHLTAFRDADGKLWQCVRCGVGLKTVPSAFANYAGGRLMPVKCRG-IRNWLDDFAIPSRVVRGHWPLLRTTFQCLNEGKLTVNLQNSKFCQPGLEFVGMVVDRKKNRPSPSMIDAVT*LSRPTIVEEVRVLLGMTGYLRQFAPNYSTLVAPIPDLLRDPRFRSKRSRRMSVPWEKEQTRAFLVLIECLASLAILALPDWGKGFQLHADASETGAGAVLTQQQGSPALEKVIAFESRRWSKTDALRSPTDRECMGVMWNVAKFQPYRWGRPFMLIIDCSALIWLFKSQALSPKYHRWALRFMEHDMTLKWQHDTQNQVVEAMARLPREGEP 1011
            Q+ I   +R  TAFRDA G+L+Q  RC  GL T+P+ F+   G  L P + +G I  WLDD  I S  +  H   +    + L E   +V+   S FC   +EF+G++V R   RP PS I A+T + +PT V  +R  +GM  +LR F  ++S +VAP+ D+LR+  F +KR+R +++PW +EQ  A   +I  L S  +L  PDW   F LH DASE  AGAVLTQ       +  I F S RW++++A R+PTDRE    ++ +  F+ Y   +PF L+ DCSA+ WLF+SQ LS   +R+ALR ME  MTL+W+  T++ + +A++RLP++G P
Sbjct:  911 QIPIKPSDRPKTAFRDARGRLYQFTRCSFGLTTIPAVFSALLGDTLRPTESKGGIERWLDDILIHSETLEEHLKKIDEVLKLLQEAGFSVHFDKSLFCMQEVEFLGVMVGRSGVRPPPSKIKAITEMEKPTTVGGLRSFVGMANFLRDFVKDFSAIVAPLTDILRNKDFSTKRARNLAIPWGEEQDAAHDAIIRALVSPPVLLPPDWELPFTLHTDASERAAGAVLTQVVEDH--DTAIGFGSHRWTQSEAKRAPTDREVRAALFGLEHFRIYLLHQPFTLVTDCSAITWLFQSQHLSSTMYRYALRMMEFTMTLQWRKGTEHTIPDALSRLPQKGPP 1246          
BLAST of mRNA_H-elongata_contig16281.3985.1 vs. uniprot
Match: A0A6H5K9Z4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Z4_9PHAE)

HSP 1 Score: 260 bits (664), Expect = 5.150e-79
Identity = 137/301 (45.51%), Postives = 179/301 (59.47%), Query Frame = 1
Query:    1 QLGIHEDERHLTAFRDADGKLWQCVRCGVGLKTVPSAFANYAGGRLMPVKCRGIRNWLDDFAIPSRVVRGHWPLLRTTFQCLNEGKLTVNLQNSKFCQPGLEFVGMVVDRKKNRPSPSMIDAVT*LSRPTIVEEVRVLLGMTGYLRQFAPNYSTLVAPIPDLLRDPRFRSKRSRRMSVPWEKEQTRAFLVLIECLASLAILALPDWGKGFQLHADASETGAGAVLTQQQGSPALEKVIAFESRRWSKTDALRSPTDRECMGVMWNVAKFQPYRWGRPFMLIIDCSALIWLFKSQALSPKYH 903
            Q+ I E +R+ TAFRDADG LW+  R G GL  +P+AF       L  +   G+ +WLDD  I S     H   L      L    L+VN     F     EF+GM++D     P+PS +DA+  + RP  VEE+R  LG+TGYLRQF PNYS   AP+ ++LR+  F SKR+R++ +PW   +  AF  L E LAS  +LA PD  + F+LH DAS  G GA L Q      + + +AF S R+S+TDA R PT+RECMGV+W V  F+PY  GR F L+ DCSAL WLF+S+ L PK H
Sbjct:   69 QMEIAEKDRYKTAFRDADGMLWEFTRAGFGLTVLPAAFTRRVKSALGHLA--GVFSWLDDILIASDSWEEHLATLTLVLNRLLAAGLSVNFAKCIFGAASQEFLGMIIDSTGLYPAPSKLDAIARMPRPHTVEELRTFLGLTGYLRQFVPNYSLTAAPLTNILRNKAFASKRARKLPIPWSVAEEDAFQSLRETLASPKVLAFPDLERPFELHTDASTLGVGASLMQTIDG--VTRAVAFASHRFSQTDARRGPTERECMGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRSRELCPKLH 365          
BLAST of mRNA_H-elongata_contig16281.3985.1 vs. uniprot
Match: A0A6H5JIH2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIH2_9PHAE)

HSP 1 Score: 251 bits (642), Expect = 2.140e-78
Identity = 133/305 (43.61%), Postives = 179/305 (58.69%), Query Frame = 1
Query:   82 GVGLKTVPSAFANYAGGRLMPVKCRGIRNWLDDFAIPSRVVRGHWPLLRTTFQCLNEGKLTVNLQNSKFCQPGLEFVGMVVDRKKNRPSPSMIDAVT*LSRPTIVEEVRVLLGMTGYLRQFAPNYSTLVAPIPDLLRDPRFRSKRSRRMSVPWEKEQTRAFLVLIECLASLAILALPDWGKGFQLHADASETGAGAVLTQQQGSPALEKVIAFESRRWSKTDALRSPTDRECMGVMWNVAKFQPYRWGRPFMLIIDCSALIWLFKSQALSPKYHRWALRFMEHDMTLKWQHDTQNQVVEAMARLP 996
            G GL  +P+AF       L  +   G+ +WLDD  I S     H          L    L+VN     F     EFVG ++D     P+PS +DA+  + RP  VEE+R  LG+TGYLRQF PNYS   AP+ ++LR+  F SKR+R++ + W   +  AF  L E LAS  +LA PD  + F+LH DAS  G GA L Q      + + +AF S R+S+TDA R  T+RECMGV+W V  F+PY  GR F L+ DCSAL WLF+S+ L P  HRWALR ME+D+ L+W+   ++ V +A++RLP
Sbjct:    8 GFGLTVLPAAFTRRVKSALGHLS--GVFSWLDDILIASDTREEHLATQTLVMNRLLASGLSVNFAKCIFGAASQEFVGTIIDSTGLYPAPSKVDAIARMPRPHTVEELRTFLGLTGYLRQFVPNYSLTAAPLANILRNKAFASKRARKLPIQWSAAEEDAFQYLRETLASPKVLAFPDLERPFELHTDASTLGVGASLMQTIDG--VTRAVAFASHRFSQTDARRGHTERECMGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRSRELCPTLHRWALRLMEYDLELEWKAGVEHVVPDALSRLP 308          
BLAST of mRNA_H-elongata_contig16281.3985.1 vs. uniprot
Match: A0A6H5KBF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF4_9PHAE)

HSP 1 Score: 260 bits (664), Expect = 4.460e-75
Identity = 140/339 (41.30%), Postives = 197/339 (58.11%), Query Frame = 1
Query:    1 QLGIHEDERHLTAFRDADGKLWQCVRCGVGLKTVPSAFANYAGGRLMPVKCRGIRNWLDDFAIPSRVVRGHWPLLRTTFQCLNEGKLTVNLQNSKFCQPGLEFVGMVVDRKKNRPSPSMIDAVT*LSRPTIVEEVRVLLGMTGYLRQFAPNYSTLVAPIPDLLRDPRFRSKRSRRMSVPWEKEQTRAFLVLIECLASLAILALPDWGKGFQLHADASETGAGAVLTQQ-QGSPALEKVIAFESRRWSKTDALRSPTDRECMGVMWNVAKFQPYRWGRPFMLIIDCSALIWLFKSQALSPKYHRWALRFMEHDMTLKWQHDTQNQVVEAMARLPREGEPS 1014
            Q+ I E +R+ TAFRDADG L++  R G GL  +PSAF       L  V   G+ +WLDD  + +     H   L      L    L+VN     F     EF+GM++D     P+PS ++A+  + RP  VE++R L+                 AP+ D+LR+  F SKR+R++ + W + +  AF  L +CLAS  +LA PD    F+LH+DAS  GAGA L Q   G+P   ++IAF S ++S+TDA R PT+RECMGV+W V  F+PY  GR F ++ DCSAL WLF+S+ L PK HRWALR ME+D+ L+W+    + + +A++RLP    PS
Sbjct:  415 QIEIAEKDRYKTAFRDADGMLYEFTRAGFGLTVLPSAFTRRVKSALGIVD--GVFSWLDDILVANETWEEHLAALVLVLTRLRAAGLSVNFPKCIFGASSQEFLGMIIDATGMHPAPSKLEAIANMPRPQTVEDLRTLVA----------------APLTDILRNKDFASKRARKLPIQWGQAEEHAFHHLRQCLASPTVLAFPDPNAPFELHSDASSVGAGATLLQTIDGTP---RIIAFASHKFSRTDARRGPTERECMGVLWGVDHFKPYLAGRQFKVVTDCSALTWLFRSRELCPKLHRWALRLMEYDIGLEWRAGVHHVLPDALSRLPVASSPS 732          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16281.3985.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQV6_9PHAE3.920e-9146.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIS6_9PHAE5.560e-9145.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFK7_9PHAE1.730e-8846.08Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KEH2_9PHAE1.030e-8646.08RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A6H5LHQ7_9PHAE1.050e-8444.31Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JF70_9PHAE6.120e-8140.90Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KHG6_9PHAE6.240e-8041.42Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K9Z4_9PHAE5.150e-7945.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIH2_9PHAE2.140e-7843.61Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KBF4_9PHAE4.460e-7541.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16281contigH-elongata_contig16281:6406..7419 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.2
Seed ortholog evalue1.1e-27
Seed eggNOG ortholog164328.Phyra78393
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QH6E@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1014
Cds size594
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929952.4880846-CDS-H-elongata_contig16281:6405..69991622929952.4880846-CDS-H-elongata_contig16281:6405..6999Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16281 6406..6999 -
1691679221.0891128-CDS-H-elongata_contig16281:6405..69991691679221.0891128-CDS-H-elongata_contig16281:6405..6999Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16281 6406..6999 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929952.500773-UTR-H-elongata_contig16281:6999..74191622929952.500773-UTR-H-elongata_contig16281:6999..7419Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16281 7000..7419 -
1691679221.0993187-UTR-H-elongata_contig16281:6999..74191691679221.0993187-UTR-H-elongata_contig16281:6999..7419Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16281 7000..7419 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16281.3985.1prot_H-elongata_contig16281.3985.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16281 6406..6999 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16281.3985.1

>prot_H-elongata_contig16281.3985.1 ID=prot_H-elongata_contig16281.3985.1|Name=mRNA_H-elongata_contig16281.3985.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=198bp
MTGYLRQFAPNYSTLVAPIPDLLRDPRFRSKRSRRMSVPWEKEQTRAFLV
LIECLASLAILALPDWGKGFQLHADASETGAGAVLTQQQGSPALEKVIAF
ESRRWSKTDALRSPTDRECMGVMWNVAKFQPYRWGRPFMLIIDCSALIWL
FKSQALSPKYHRWALRFMEHDMTLKWQHDTQNQVVEAMARLPREGEPS
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mRNA from alignment at H-elongata_contig16281:6406..7419-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16281.3985.1 ID=mRNA_H-elongata_contig16281.3985.1|Name=mRNA_H-elongata_contig16281.3985.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1014bp|location=Sequence derived from alignment at H-elongata_contig16281:6406..7419- (Himanthalia elongata Himel1 dioecious)
CAACTGGGGATTCACGAGGATGAAAGACACTTGACGGCTTTCCGCGACGC AGACGGGAAACTCTGGCAATGCGTGCGGTGCGGCGTTGGCCTCAAGACGG TACCGTCCGCCTTCGCAAACTATGCTGGAGGAAGGCTCATGCCCGTAAAA TGCCGAGGAATAAGAAACTGGCTCGATGACTTTGCCATCCCGTCGCGAGT CGTTAGAGGACATTGGCCGTTATTGCGTACCACCTTCCAGTGCTTAAATG AGGGCAAACTCACCGTCAACCTCCAAAACTCGAAGTTCTGTCAGCCAGGG CTAGAATTCGTCGGTATGGTGGTTGACAGAAAAAAAAACAGGCCATCACC TAGCATGATCGACGCAGTTACGTAGTTATCACGACCAACTATTGTGGAGG AAGTTCGGGTACTACTAGGCATGACGGGATATCTGCGACAGTTCGCGCCC AACTACAGCACCCTAGTTGCGCCAATCCCCGATCTTCTCCGAGACCCGCG GTTTCGTTCGAAGCGGTCGAGACGAATGAGCGTACCCTGGGAAAAGGAAC AGACGAGAGCGTTCCTGGTCCTGATAGAGTGCCTAGCGTCACTCGCTATC CTGGCTCTGCCAGACTGGGGGAAAGGCTTTCAGCTGCATGCCGACGCTAG TGAAACAGGGGCGGGAGCAGTCCTGACCCAGCAGCAGGGATCACCGGCAC TTGAGAAAGTAATTGCCTTTGAGAGCCGACGGTGGTCGAAAACAGACGCC CTGAGATCACCAACTGACCGCGAGTGTATGGGAGTCATGTGGAATGTTGC GAAGTTCCAGCCCTACCGCTGGGGAAGGCCGTTCATGCTTATTATCGACT GCTCGGCGCTGATCTGGTTGTTCAAGAGCCAGGCCCTCTCGCCGAAGTAT CACCGCTGGGCACTACGCTTCATGGAACACGACATGACCCTGAAATGGCA ACACGACACACAAAACCAGGTGGTGGAGGCCATGGCTCGACTACCTAGAG AAGGGGAACCCAGT
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Coding sequence (CDS) from alignment at H-elongata_contig16281:6406..7419-

>mRNA_H-elongata_contig16281.3985.1 ID=mRNA_H-elongata_contig16281.3985.1|Name=mRNA_H-elongata_contig16281.3985.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1188bp|location=Sequence derived from alignment at H-elongata_contig16281:6406..7419- (Himanthalia elongata Himel1 dioecious)
ATGACGGGATATCTGCGACAGTTCGCGCCCAACTACAGCACCCTAGTTGC
GCCAATCCCCGATCTTCTCCGAGACCCGCGGTTTCGTTCGAAGCGGTCGA
GACGAATGAGCGTACCCTGGGAAAAGGAACAGACGAGAGCGTTCCTGGTC
CTGATAGAGTGCCTAGCGTCACTCGCTATCCTGGCTCTGCCAGACTGGGG
GAAAGGCTTTCAGCTGCATGCCGACGCTAGTGAAACAGGGGCGGGAGCAG
TCCTGACCCAGCAGCAGGGATCACCGGCACTTGAGAAAGTAATTGCCTTT
GAGAGCCGACGGTGGTCGAAAACAGACGCCCTGAGATCACCAACTGACCG
CGAGTGTATGGGAGTCATGTGGAATGTTGCGAAGTTCCAGCCCTACCGCT
GGGGAAGGCCGTTCATGCTTATTATCGACTGCTCGGCGCTGATCTGGTTG
TTCAAGAGCCAGGCCCTCTCGCCGAAGTATCACCGCTGGGCACTACGCTT
CATGGAACACGACATGACCCTGAAATGGCAACACGACACACAAAACCAGG
TGGTGGAGGCCATGGCTCGACTACCTAGAGAAGGGGAACCCAGTATGACG
GGATATCTGCGACAGTTCGCGCCCAACTACAGCACCCTAGTTGCGCCAAT
CCCCGATCTTCTCCGAGACCCGCGGTTTCGTTCGAAGCGGTCGAGACGAA
TGAGCGTACCCTGGGAAAAGGAACAGACGAGAGCGTTCCTGGTCCTGATA
GAGTGCCTAGCGTCACTCGCTATCCTGGCTCTGCCAGACTGGGGGAAAGG
CTTTCAGCTGCATGCCGACGCTAGTGAAACAGGGGCGGGAGCAGTCCTGA
CCCAGCAGCAGGGATCACCGGCACTTGAGAAAGTAATTGCCTTTGAGAGC
CGACGGTGGTCGAAAACAGACGCCCTGAGATCACCAACTGACCGCGAGTG
TATGGGAGTCATGTGGAATGTTGCGAAGTTCCAGCCCTACCGCTGGGGAA
GGCCGTTCATGCTTATTATCGACTGCTCGGCGCTGATCTGGTTGTTCAAG
AGCCAGGCCCTCTCGCCGAAGTATCACCGCTGGGCACTACGCTTCATGGA
ACACGACATGACCCTGAAATGGCAACACGACACACAAAACCAGGTGGTGG
AGGCCATGGCTCGACTACCTAGAGAAGGGGAACCCAGT
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