prot_H-elongata_contig16029.3871.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig16029.3871.1
Unique Nameprot_H-elongata_contig16029.3871.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length1071
Homology
BLAST of mRNA_H-elongata_contig16029.3871.1 vs. uniprot
Match: D8LI54_ECTSI (USP domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI54_ECTSI)

HSP 1 Score: 394 bits (1013), Expect = 3.340e-112
Identity = 316/765 (41.31%), Postives = 388/765 (50.72%), Query Frame = 0
Query:   87 EDKLVVLGERGSSKVYTVFVEEVWEG--EGECEKESG-SLAVQVALDQLNRMSLKLLLTGGLEGPDSIRVDKRWTLDQLRDAIAAATRRDSRSFQLRM-QANGSEIRPGPETLRSQGILNIFNLHVSPGRPLERNEEAIVIAPLEVGFAAGLRASPPPSVVKALAGGRAASRFLPPPQEXXXXXXXXXXPSSASNRQGEEATAAERGALGD-----------------------------------PSGNGGGIAGERREGFFSGKQDSDFRNVDIEIGLTSTKDCAPAATLAAASFSFGLPRGYTSCAVDSSGSGGVTCSMLGEAVAAGEFCA------DAVGNIGGSGGGPATAPLSSATGAKINDYASSAS---VRPDSGPAAAEPGPHASAVWAAAXXXXXXXXKLAKAEAERLTTTAVEFPPTESSWGDQFTIAVKHDSTVADIRLAVWQEMRRRGL-------VAGPPDGSRKKAEGDRPGTEPEASLG------CSPAALRLREKRNAQPSTILHDSDGIPTRLKYPTEGTPWLLVAQALPVEENLGQPGVHVAAGSSCGGEDKKEKDLGLTAKVSWAGGRGGSCDELARFDAGDRNAAVAGVSLHIPPANAKVIVVQWWDRWEWRLTEKYEAWISPTETVAAVRKRFAEQVGVDPANIRANRCTSKTRLRLVDLRGASDANQSNSSSGCLGLGVASVESGGWNSTSSSSTMCRWGDLDASRGDYAVMTPSISEGDLVLLQDVSQPLKRLMATTEAAI 790
            E ++VVLG+RGS+ +  ++VEEV EG   G+ ++E G SLAV+VA DQ NR+++ L LTGG+EGP  +  DKRWT DQLR+AIA A    +RSF+LR  Q N  EIRPGPETL  +G  N+  LHVSPGRPLE +EEA+ +AP++VGF  GL  +P  SVV A+A GR  +R                         G  A   E+  +GD                                   P G G G+ GE            D R   +   L  T     AAT      S G     T+ +V SS +G  T +  G A+ A E C       +AV         P + P SS+  A               P S        P     WAAAXXXXXXXX+ AKAE E LT+T VE  P ES WG+QF +AV  DSTV DIR AVW EMRRRGL       V    D   ++ + DR  T    S G       +P ALRLRE+    P+TI+ D+DG  TRL+      PWLLVAQ LP EE+LG+P      G   GG        G +          GS +                     PP +A+VIVVQWW+RWEWRLTEKYEAW+SPTETVA+ R+R AEQ GV+PAN+ ANRC    RLRL DLRG +    S    G  G      +S G    S S   C W DL+ASRGD  V   +ISEG LVLLQD SQPLK+L   TEA+I
Sbjct: 1198 ESEVVVLGDRGSNIILRIYVEEVPEGGDAGDGDEEEGVSLAVKVATDQPNRITVTLDLTGGIEGPGRMSADKRWTSDQLREAIAQAIGCPNRSFRLRKCQGNTPEIRPGPETLAKKGFYNLIKLHVSPGRPLELHEEAVTVAPVDVGFRVGLGPAPT-SVVLAIAAGRVRAR------SSSADSAAVKEEGGGQQELGYGAATTEKVGVGDCRSLKFPEVDAEIGPVAICDTTTAPPSADCSPTLGPVGEGRGVVGE-----------GDNRPTVVASDLLLTLRGVGAAT--GGGDSSGGSEAPTA-SVSSSETGQTTPTNRGIALLASEECKTTPTDREAVAPFA-----PPSPPRSSSAVAXXXXXXXXXXXXXAHPGSAAVGTGASPEGGVAWAAAXXXXXXXXQDAKAETEALTSTYVEVVPPESRWGEQFNVAVHRDSTVGDIRRAVWTEMRRRGLGPRGFSAVGAAADVGNEEEKDDRLPTPGAVSTGHPLEEGWTPGALRLRERHVKLPATIVRDADGKVTRLRSRPRDAPWLLVAQVLPREEDLGRPVFPQGGGG--GGXXXXXXXXGDSGH--------GSAETXXXXXXXXXXGGADAARDDCPPQDARVIVVQWWNRWEWRLTEKYEAWVSPTETVASARRRLAEQAGVNPANLLANRCAPNARLRLFDLRGTA----SERGDGSGGSPAPEKQSSGTWGGSFSHNKCHWSDLEASRGDQPVGGSAISEGSLVLLQDSSQPLKQLAPATEASI 1922          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16029.3871.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LI54_ECTSI3.340e-11241.31USP domain-containing protein (Fragment) n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16029contigH-elongata_contig16029:1868..6131 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16029.3871.1mRNA_H-elongata_contig16029.3871.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig16029 1866..7713 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig16029.3871.1 ID=prot_H-elongata_contig16029.3871.1|Name=mRNA_H-elongata_contig16029.3871.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=1071bp
MAQGESKEMDERPRAWARATGINVATEEAPMIGFTTAKALADSNARKAAA
PPKSEAGGDSRDADQPPRRTLGVNEKEGTRTDGGDDEDKLVVLGERGSSK
VYTVFVEEVWEGEGECEKESGSLAVQVALDQLNRMSLKLLLTGGLEGPDS
IRVDKRWTLDQLRDAIAAATRRDSRSFQLRMQANGSEIRPGPETLRSQGI
LNIFNLHVSPGRPLERNEEAIVIAPLEVGFAAGLRASPPPSVVKALAGGR
AASRFLPPPQEQEQEQEQEQHPSSASNRQGEEATAAERGALGDPSGNGGG
IAGERREGFFSGKQDSDFRNVDIEIGLTSTKDCAPAATLAAASFSFGLPR
GYTSCAVDSSGSGGVTCSMLGEAVAAGEFCADAVGNIGGSGGGPATAPLS
SATGAKINDYASSASVRPDSGPAAAEPGPHASAVWAAAAAAAATASKLAK
AEAERLTTTAVEFPPTESSWGDQFTIAVKHDSTVADIRLAVWQEMRRRGL
VAGPPDGSRKKAEGDRPGTEPEASLGCSPAALRLREKRNAQPSTILHDSD
GIPTRLKYPTEGTPWLLVAQALPVEENLGQPGVHVAAGSSCGGEDKKEKD
LGLTAKVSWAGGRGGSCDELARFDAGDRNAAVAGVSLHIPPANAKVIVVQ
WWDRWEWRLTEKYEAWISPTETVAAVRKRFAEQVGVDPANIRANRCTSKT
RLRLVDLRGASDANQSNSSSGCLGLGVASVESGGWNSTSSSSTMCRWGDL
DASRGDYAVMTPSISEGDLVLLQDVSQPLKRLMATTEAAIVSHAVDRAEV
CDMSSVGSWYSGKDESGGNGNGTTATTTTASASYSSSKPKERALVIRTRR
DRLQEGKMAAAAAAAAVATAASAAAATAAIVVAASVAVADTSAQGAVVDF
SVKGDPDANGGVSLRGGGGLGTSEGVETEAAPHLLSSIEGTGTVGSDGNG
HECPGLQGDHDDGGADISQEFTGGNGIGMAVGGDGGVVSSSPDRVRVCGR
GKIEGERFGQDSSGDQTEKDDVWGLELSEREAYADLSMGCVEDDAIAMHS
DAEVAEQGGRALFDDLALVE*
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