prot_H-elongata_contig158417.3787.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig158417.3787.1
Unique Nameprot_H-elongata_contig158417.3787.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length68
Homology
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BLAST of mRNA_H-elongata_contig158417.3787.1 vs. uniprot
Match: D8LGL5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGL5_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 5.620e-31
Identity = 53/63 (84.13%), Postives = 56/63 (88.89%), Query Frame = 0 
Query:    6 KHKLLIFSIIVLIFIAIGAWHSEDMINAWWAMWTVPIIFLGVWLLFDCIFVDDKAFIFDHDYE 68
            KHKLLIF II+L FIA GAWHSEDM   +WAMWTVPIIFL VWLLFDCIFVDDKAF+FDHDYE
Sbjct:    6 KHKLLIFWIIMLSFIAFGAWHSEDMETPFWAMWTVPIIFLFVWLLFDCIFVDDKAFVFDHDYE 68
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BLAST of mRNA_H-elongata_contig158417.3787.1 vs. uniprot
Match: A0A836CKG6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKG6_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.620e-19
Identity = 41/65 (63.08%), Postives = 48/65 (73.85%), Query Frame = 0 
Query:    6 KHKLLIFSIIVLIFIAIGAWHSEDMIN-AWWAMWTVPIIFLGVWLLFDCIFV-DDKAFIFDHDYE 68
            +HKL+   II    +A  AW++ D  N AWWAMWTVPI+FL  WLL DC+FV DDKAFIFDHDYE
Sbjct:    6 RHKLITLLIIXXXXVAFAAWNNTDDNNTAWWAMWTVPIMFLSFWLLMDCMFVSDDKAFIFDHDYE 70
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig158417.3787.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGL5_ECTSI5.620e-3184.13Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CKG6_9STRA1.620e-1963.08Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..32
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..8
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 52..68
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 33..51
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 9..27
NoneNo IPR availableTMHMMTMhelixcoord: 34..56
NoneNo IPR availableTMHMMTMhelixcoord: 7..24

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig158417contigH-elongata_contig158417:504..707 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig158417.3787.1mRNA_H-elongata_contig158417.3787.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig158417 504..707 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig158417.3787.1 ID=prot_H-elongata_contig158417.3787.1|Name=mRNA_H-elongata_contig158417.3787.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
MVVLIKHKLLIFSIIVLIFIAIGAWHSEDMINAWWAMWTVPIIFLGVWLL
FDCIFVDDKAFIFDHDYE
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